ID: uc011bnz.1_intron_5_0_chr3_150876587_f.5p
GENE: (6)
chr3:150876537-150876786+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(9)
BRAIN 		(11)
BREAST 		(10)
CELL-LINE 		(9)
CERVIX 		(1)
FIBROBLAST 		(3)
LIVER 		(1)
OTHER 		(3)
SKIN 		(2)
UTERUS

Sense strand
GACCAATGGATGATGATCTTCTTAAACTCTTGCTACCACTAATGCTGCAGGTATAGTACATGTCCCCTTGAGGCAGTTGGTTTTATGGGCAAGAAATGAGCCTGATAAGAATGATTAGGTAAGTGGAAGAGGAAAAGGAAAAAATATCCTGTTGAAATGGAAGGAAAAAATGTCTTTGATGCTATAACACATGAAGTGATAAAGGCTTCTAATAAGTTTTAGCCATCATTTGTGTTAACCATGTTGGTAG
................................................................(((.((((((.....)))))).)))..........(((((((.......)))))))..................................................................................................................................
...............................................................64.................................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577744(Rovira)
total RNA. (breast)		SRR189787SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		GSM532880(GSM532880)
G659T. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040025(GSM532910)
G613T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)
....................................................................TGAGGCAGTTGGTTTTATAGTT................................................................................................................................................................2234.000.0011.004.001.00--1.004.00--1.00-1.001.00-1.00-1.002.00-2.001.00----------------1.00-------1.00--1.00----
....................................................................TGAGGCAGTTGGTTTTATAGT.................................................................................................................................................................2112.000.00---2.00---1.001.001.00--1.00-------1.00--1.00---1.00--1.00--------1.00------1.00------
....................................................................TGAGGCAGTTGGTTTTATGGTT................................................................................................................................................................2211.000.002.00--1.00-1.00--1.00-1.00--1.00-------1.00---1.00-------1.00--------1.00----------
....................................................................TGAGGCAGTTGGTTTTGTGG..................................................................................................................................................................204.000.00-----2.00---------1.00---------------------------------1.00---
....................................................................TGAGGCAGTTGGTTTTATAG..................................................................................................................................................................204.000.001.001.00------------------------1.00-----------------1.00--------
....................................................................TGAGGCAGTTGGTTTTATGT..................................................................................................................................................................202.000.00---1.00-------------------------------------1.00-----------
....................................................................TGAGGCAGTTGGTTTTATATT.................................................................................................................................................................212.000.00--------------1.00--------------------------------1.00-----
....................................................................TGAGGCAGTTGGTTTTATCG..................................................................................................................................................................201.000.00----------1.00------------------------------------------
......................................................................AGGCAGTTGGTTTTATAGTT................................................................................................................................................................201.000.00--1.00--------------------------------------------------
.......................AAACTCTTGCTACCACTAATGCTGCAG........................................................................................................................................................................................................2711.001.00----------------------------1.00------------------------
...........................................................................................................AGAATGATTAGGTAAGTGGA...........................................................................................................................2011.001.00------------------------1.00----------------------------
.........................................................................................CAAGAAATGAGCCTGAAATA.............................................................................................................................................201.000.00--------------------------------------1.00--------------
....................................................................TGAGGCAGTTGGTTTTATCGGT................................................................................................................................................................221.000.00----1.00------------------------------------------------
......................................................................................................................GTAAGTGGAAGAGGAATA..................................................................................................................181.000.00----------------------1.00------------------------------
....................................................................TGAGGCAGTTGGTTTTACGGT.................................................................................................................................................................2111.001.00-----------------------------1.00-----------------------
..............................................GCAGGTATAGTACATCGGC.........................................................................................................................................................................................191.000.00-----------------------------------1.00-----------------
....................................................................TGAGGCAGTTGGTTTTATGGAT................................................................................................................................................................221.000.00------------------1.00----------------------------------
...............................................................................................................................AGAGGAAAAGGAAAAAACCGC......................................................................................................211.000.00----------------------------------------------------1.00
....................................................................TGAGGCAGTTGGTTTTATAATT................................................................................................................................................................221.000.00---------------------1.00-------------------------------
....................................................................TGAGGCAGTTGGTTTTATTTTT................................................................................................................................................................221.000.00--1.00--------------------------------------------------
....................................................................TGAGGCAGTTGGTTTATTG...................................................................................................................................................................191.000.00-----------1.00-----------------------------------------
....................................................................TGAGGCAGTTGGTTTTATATCT................................................................................................................................................................221.000.00----------------------------------1.00------------------
....................................................................TGAGGCAGTTGGTTTTATAGCT................................................................................................................................................................221.000.00----1.00------------------------------------------------
....................................................................TGAGGCAGTTGGTTTTATGATTT...............................................................................................................................................................231.000.00---------------1.00-------------------------------------
....................................................................TGAGGCAGTTGGTTTTACTGT.................................................................................................................................................................2111.001.00----1.00------------------------------------------------
....................................................................TGAGGCAGTTGGTTTTATAGC.................................................................................................................................................................211.000.00--------------------------------1.00--------------------
....................................................................TGAGGCAGTTGGTTTTGTG...................................................................................................................................................................191.000.00----1.00------------------------------------------------
....................................................................TGAGGCAGTTGGTTTTATGTTT................................................................................................................................................................221.000.00-------------1.00---------------------------------------
.....................................................................GAGGCAGTTGGTTTTATTTTT................................................................................................................................................................211.000.00--1.00--------------------------------------------------
....................................................................TGAGGCAGTTGGTTTTACAGT.................................................................................................................................................................2111.001.00------------------1.00----------------------------------
....................................................................TGAGGCAGTTGGTTTTATTGTT................................................................................................................................................................221.000.00--1.00--------------------------------------------------
....................................................................TGAGGCAGTTGGTTTTTTGT..................................................................................................................................................................201.000.00----------------------------------------1.00------------
....................................................................TGAGGCAGTTGGTTTTTG....................................................................................................................................................................181.000.00------------------------------------1.00----------------
....................................................................TGAGGCAGTTGGTTTTATCA..................................................................................................................................................................201.000.00---1.00-------------------------------------------------
....................................................................TGAGGCAGTTGGTTTTA.....................................................................................................................................................................1711.001.00----------------1.00------------------------------------
....................................................................TGAGGCAGTTGGTTTTATGGCT................................................................................................................................................................221.000.00-------1.00---------------------------------------------

Antisense strand
GACCAATGGATGATGATCTTCTTAAACTCTTGCTACCACTAATGCTGCAGGTATAGTACATGTCCCCTTGAGGCAGTTGGTTTTATGGGCAAGAAATGAGCCTGATAAGAATGATTAGGTAAGTGGAAGAGGAAAAGGAAAAAATATCCTGTTGAAATGGAAGGAAAAAATGTCTTTGATGCTATAACACATGAAGTGATAAAGGCTTCTAATAAGTTTTAGCCATCATTTGTGTTAACCATGTTGGTAG
................................................................(((.((((((.....)))))).)))..........(((((((.......)))))))..................................................................................................................................
...............................................................64.................................................................131.....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577744(Rovira)
total RNA. (breast)		SRR189787SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		GSM532880(GSM532880)
G659T. (cervix)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040025(GSM532910)
G613T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)
...................................................................................................................................GAAAAGGAAAAAATAGAT..................................................................................................... 181.000.00---------------------------------------------------1.00-
.....................................................................................................................................................................................................................AAGTTTTAGCCATCACA.................... 171.000.00-------------------------------------------1.00---------
.............................................................................................................................GAAGAGGAAAAGGAAAAATACG....................................................................................................... 221.000.00--------------------------------------------------1.00--