ID: uc011azh.1_intron_4_0_chr3_42229638_f.3p
GENE: (5)
chr3:42230308-42230557+


(5)
B-CELL
(2)
BRAIN
(3)
BREAST
(15)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(2)
HELA
(3)
LIVER
(4)
OTHER
(19)
SKIN
(1)
XRN.ip

Sense strand
AGTTGTGGATAAAGGGTTGAGATGTGGGTTCAGAATTGGTGGTGAGCCTGTGCACTGGGGGCGCTGTCTTCCTGGGGTTGGGAGAGCCGTCTGGTGGGTCATTGTCCTTCCTGCAAGCCCTTCTTTGTGTCTCCACATGGTTTGCCAGGTGGTGGGAGGAAATGCGTCTCCCTAGGTTGTGAGCGTACTTTCTCCCCCAGGTTGAAGAGGAATGAGTCGTCCTCCTCAGTCCAGAATTACTTTCATTTGG
.....................................................................................................................................................(((.((((((((.((((.(((..........))))))).)))))))))))...................................................
................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040028(GSM532913)
G026N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191542(GSM715652)
64genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................................TGAGCGTACTTTCTCCCCCAGT.................................................228.000.00------1.00------1.00---1.00----1.00---1.00----1.00--------1.00------------1.00----
.....................................................................................................................................................TGGTGGGAGGAAATGCGTCTCC...............................................................................2216.006.00-2.00-----1.00--------1.00------1.00-1.00--------------------------------
.....................................................................................................................................................TGGTGGGAGGAAATGCGTCTCCC..............................................................................2315.005.00--------1.00---1.00------1.00----------------------1.00-----------1.00---
.....................................................................................................................................................TGGTGGGAGGAAATGCGTCT.................................................................................2014.004.00--------1.00-----1.00--------------------1.00-------------1.00--------
................................................................................................................................................................................TTGTGAGCGTACTTTCTCCCCCAGT.................................................253.000.00--3.00-------------------------------------------------------
....................................................................................................................................................................................GAGCGTACTTTCTCCCCCAGA.................................................213.000.00----------2.00-------------------------1.00---------------------
...................................................................................................................................................................................TGAGCGTACTTTCTCCCCCA...................................................2012.002.002.00---------------------------------------------------------
............................................................................................................................................................................TAGGTTGTGAGCGTACTTTCTCCCCCAGA.................................................292.000.00---------2.00------------------------------------------------
............................................................................................................................................................................TAGGTTGTGAGCGTACTTTCT.........................................................2112.002.00-----------1.00--------------------------------------1.00-------
...................................................................................................................................................................................TGAGCGTACTTTCTCCCCCAGA.................................................222.000.00-1.00-----------------------------------------1.00--------------
....................................................................................................................................................GTGGTGGGAGGAAATGCGTCTCC...............................................................................2312.002.002.00---------------------------------------------------------
.....................................................................................................................................................TGGTGGGAGGAAATGCGCCTC................................................................................211.000.00-----1.00----------------------------------------------------
..........................................................................................................................................................GGAGGAAATGCGTCTCCCTAGGTTGTGAGCG.................................................................3111.001.00------------------1.00---------------------------------------
.....................................................................................................................................................TGGTGGGAGGAAATGCGTCTC................................................................................2111.001.00------------------------1.00---------------------------------
.................................................................................................................................................................................................CCCCCAGGTTGAAGACGA.......................................181.000.00------------------------------1.00---------------------------
.......................................................................................................................................................................CTCCCTAGGTTGTGAGCGTACTTT...........................................................2411.001.00--------------1.00-------------------------------------------
...................................................................................................................................................................................TGAGCGTACTTTCTCCCCTAG..................................................211.000.00----------------------------------1.00-----------------------
.....................................................................................................................................................TGGTGGGAGGAAATGCGAAAA................................................................................211.000.00---------------------1.00------------------------------------
....................................................................................................................................................................................GAGCGTACTTTCTCCCCCAGAT................................................221.000.00----------------------------------------------------1.00-----
.................................................................................................................................................................................TGTGAGCGTACTTTCTCCA......................................................191.000.00-----------1.00----------------------------------------------
............................................................................................................................................................................TAGGTTGTGAGCGTACTTTCTCC.......................................................2311.001.00-----------------------------1.00----------------------------
..................................................................................................................................................................................................CCCCAGGTTGAAGAGGAATG....................................2011.001.00--------------------1.00-------------------------------------
............................................................................................................................................................................TAGGTTGTGAGCGTACTTTCTCCCT.....................................................251.000.00-----------------------------------------------1.00----------
........................................................GGGGGCGCTGTCTTCAGCA...............................................................................................................................................................................191.000.00-------------------------------------1.00--------------------
....................................................................................................................................................................................GAGCGTACTTTCTCCCCCAGT.................................................211.000.00---------------------------------------------1.00------------
............................................................................................................................................................................................................AAGAGGAATGAGTCGTCG............................1811.001.00--------------------------------------------1.00-------------
....................................................................................................................................................................................................................TGAGTCGTCCTCCTCAGTCC..................2011.001.00------------------------------------------------1.00---------
.....................................................................................................................................................TGGTGGGAGGAAATGCGTCTCTTT.............................................................................2411.001.00---------------------------1.00------------------------------
.....................................................................................................................................................................................AGCGTACTTTCTCCCCCAGT.................................................201.000.00---------------------------------1.00------------------------
................................................................................................................................................................................TTGTGAGCGTACTTTCTCCCCCAGC.................................................251.000.00----------------------------------------------1.00-----------
.....................................................................................................................................................TGGTGGGAGGAAATGCGTCTGA...............................................................................2211.004.00--------------------------------------1.00-------------------
............AGGGTTGAGATGTGGGTTC...........................................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00------
.................................................................................................................................................................................................................GAATGAGTCGTCCTCCTCAGTCCAGAATTAC..........3111.001.00---1.00------------------------------------------------------
...................................................................................................................................................................................TGAGCGTACTTTCTCCCCCAGTTAT..............................................251.000.00--------------------------------1.00-------------------------
............................................................................................................................................................................TAGGTTGTGAGCGTACTTTCTCCCCCA...................................................2711.001.00-------1.00--------------------------------------------------
.................................................................................................................................................................................................................GAATGAGTCGTCCTCCTCAGTCCAGA...............2611.001.00-------------1.00--------------------------------------------
............................................................................................................................................................................TAGGTTGTGAGCGTACTTTC..........................................................2011.001.00----------------------------1.00-----------------------------
............................................................................................................................................................................................................AAGAGGAATGAGTCGTC.............................1711.001.00---1.00------------------------------------------------------
.....................................................................................................................................................................................................CAGGTTGAAGAGGAATG....................................1720.500.50-------------------------------------------------------0.50--
...............................................................................................................................................................................................................AGGAATGAGTCGTCC............................1530.330.33---0.33------------------------------------------------------
...................................................................................................CATTGTCCTTCCTGCA.......................................................................................................................................1650.200.20--------------------------------------------------------0.20-

Antisense strand
AGTTGTGGATAAAGGGTTGAGATGTGGGTTCAGAATTGGTGGTGAGCCTGTGCACTGGGGGCGCTGTCTTCCTGGGGTTGGGAGAGCCGTCTGGTGGGTCATTGTCCTTCCTGCAAGCCCTTCTTTGTGTCTCCACATGGTTTGCCAGGTGGTGGGAGGAAATGCGTCTCCCTAGGTTGTGAGCGTACTTTCTCCCCCAGGTTGAAGAGGAATGAGTCGTCCTCCTCAGTCCAGAATTACTTTCATTTGG
.....................................................................................................................................................(((.((((((((.((((.(((..........))))))).)))))))))))...................................................
................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR189784SRR037935(GSM510473)
293cand3. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040028(GSM532913)
G026N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038859(GSM458542)
MM386. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR191542(GSM715652)
64genomic small RNA (size selected RNA from t. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................GTTCAGAATTGGTGGTCTG............................................................................................................................................................................................................ 192.000.00----2.00-----------------------------------------------------
............................................................................................................TCCTGCAAGCCCTTCTCCC........................................................................................................................... 191.000.00---------------------------------------1.00------------------
..................................................................................................................................................................TGCGTCTCCCTAGGTCAC...................................................................... 181.000.00------1.00---------------------------------------------------
............................................................CAACCCCAGGAAGACAGCGC.......................................................................................................................................................................... 2011.001.00-----------------------------------------1.00----------------
............................................................................................................................................TTTGCCAGGTGGTGGTTT............................................................................................ 181.000.00---------------1.00------------------------------------------
.................................................GTGCACTGGGGGCGCGAAC...................................................................................................................................................................................... 191.000.00-----1.00----------------------------------------------------
..........................................................................................................................................................................................................................GTCCTCCTCAGTCCAGTCTG............ 201.000.00------------1.00---------------------------------------------
.......GATAAAGGGTTGAGATA.................................................................................................................................................................................................................................. 171.000.00---------------1.00------------------------------------------
..........................................................................................................................................................................................................................TGGACTGAGGAGGAC................. 1570.140.14---------------------------------------------------------0.14
............................................................CCAGGAAGACAGCGC............................................................................................................................................................................... 1580.120.12----0.12-----------------------------------------------------