ID: uc011arb.1_intron_0_0_chr22_46731744_f.5p
GENE: TRMU(1)
chr22:46731694-46731943+


(2)
AGO2.ip
(3)
B-CELL
(10)
BREAST
(14)
CELL-LINE
(7)
CERVIX
(1)
FIBROBLAST
(1)
HELA
(3)
LIVER
(4)
OTHER
(9)
SKIN
(1)
TESTES
(2)
UTERUS

Sense strand
GTCCGGCGGCGTGGACAGCGCCGTGGCCGCGCTGCTGCTGAGGCGGAGAGGTGAGGCGTCCGAGGCTCCCGCCCCCCGCCGAGCGAATGTGTCCCCGGAAACCTGTCCCCGTCCGTCGTGGCGTTGTGCACGTCTCCTCCCTCCCTGGGCCGCTGGTTGCGCGCGGGTCGGCAGGAGGATACCCCGTCCTCTGACTTTGGTTCGGAGGCTCCTCGCCCTCCACCTGTGTAGTCGGAGGTGTGCGCGACTG
............................................(((((.(((.(((((((((.((((..((.....)).))))...........((((............))))))).))))))...))).)))))..(((((((((.((((((....)).)))).))))..)))))........................................................................
............................................45.............................................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR343337SRR343334SRR189785DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR343336SRR040009(GSM532894)
G727T. (cervix)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191484(GSM715594)
12genomic small RNA (size selected RNA from t. (breast)
SRR040007(GSM532892)
G601T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM532884(GSM532884)
G871T. (cervix)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
GSM532873(GSM532873)
G699N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
.................................................GGTGAGGCGTCCGAGTGG.......................................................................................................................................................................................1847.000.0030.00-2.00-3.00-2.003.00--2.00---------------------1.00--1.00-1.00---1.00---1.00---------
......................................................................................................................................................................GTCGGCAGGAGGATACCC..................................................................1815.005.00-5.00-----------------------------------------------------
.................................................GGTGAGGCGTCCGAGAGG.......................................................................................................................................................................................183.000.00--2.00--------------1.00-------------------------------------
.................................................GGTGAGGCGTCCGAGT.........................................................................................................................................................................................163.000.00--1.002.00---------------------------------------------------
.......................TGGCCGCGCTGCTGCAGGT................................................................................................................................................................................................................192.000.00-------------2.00-----------------------------------------
..............................................................................................................................................................................................................................CCTGTGTAGTCGGAGGTGTGCGC.....2312.002.00----------------------1.00-------------------1.00------------
.................................................GGTGAGGCGTCCGAGTG........................................................................................................................................................................................172.000.002.00------------------------------------------------------
...CGGCGGCGTGGACAGCGCC....................................................................................................................................................................................................................................1912.002.00-----2.00-------------------------------------------------
.................................................GGTGAGGCGTCCGAGTGCC......................................................................................................................................................................................192.000.002.00------------------------------------------------------
..............................................................................................................................................................GCGCGCGGGTCGGCAGGGG.........................................................................1912.001.00-----------2.00-------------------------------------------
...................................................................................................................................................................CGGGTCGGCAGGAGGATACCC..................................................................2112.002.00------------2.00------------------------------------------
.............................................................................................................................................................TGCGCGCGGGTCGGCGGGC..........................................................................1912.001.00--------1.00-----------1.00----------------------------------
..................................................................................................................................................................GCGGGTCGGCAGGAGGATACCCCGTG..............................................................261.000.00------------------------------1.00------------------------
..............................................................................................................................................................GCGCGCGGGTCGGCAAG...........................................................................171.000.00---------------------------1.00---------------------------
.............................................................................................................................................................................................................................ACCTGTGTAGTCGGAGGTGT.........2011.001.00----------------------------1.00--------------------------
............................................................................................................................................................TTGCGCGCGGGTCGGGGC............................................................................181.000.00---------1.00---------------------------------------------
............................................................................................................................................................TTGCGCGCGGGTCGGGGG............................................................................181.000.00--------1.00----------------------------------------------
.................................................GGTGAGGCGTCCGAGTGGA......................................................................................................................................................................................191.000.00------------------------1.00------------------------------
...........TGGACAGCGCCGTGGATG.............................................................................................................................................................................................................................181.000.00----------------1.00--------------------------------------
...............................................................................................................................................................................................................................CTGTGTAGTCGGAGGCG..........171.000.00-1.00-----------------------------------------------------
.TCCGGCGGCGTGGACAGCG......................................................................................................................................................................................................................................1911.001.00---------------------------------------1.00---------------
.............................................................................................................................................................TGCGCGCGGGTCGGCGGG...........................................................................1811.001.00------------------------------------1.00------------------
............................................................................................................................................................TTGCGCGCGGGTCGGGT.............................................................................171.000.00---------1.00---------------------------------------------
.............................................................................................................................................................TGCGCGCGGGTCGGCGTC...........................................................................1811.001.00---------------1.00---------------------------------------
.............................................................................................................................................................TGCGCGCGGGTCGGC..............................................................................1511.001.00----------------------------------------------1.00--------
.................................................GGTGAGGCGTCCGAGGGG.......................................................................................................................................................................................181.000.00------1.00------------------------------------------------
............................................................................................................................................................TTGCGCGCGGGTCGGGG.............................................................................171.000.00--------------------------------------1.00----------------
.........CGTGGACAGCGCCGTGGCCG.............................................................................................................................................................................................................................2011.001.00--------------------------------------------1.00----------
..............................................................................................................................................................GCGCGCGGGTCGGCAGATA.........................................................................191.000.00--------------1.00----------------------------------------
..............................................................................................................................................................GCGCGCGGGTCGGCAGG...........................................................................1711.001.00---------------------------------1.00---------------------
.............GACAGCGCCGTGGCCG.............................................................................................................................................................................................................................1611.001.00-----1.00-------------------------------------------------
.........................................GGCGGAGAGGTGAGGACTT..............................................................................................................................................................................................191.000.00-------------------------1.00-----------------------------
............................................................................................................................................................................................................GAGGCTCCTCGCCCTCCACCTGTGTAG...................2711.001.00-----------------------------1.00-------------------------
........................GGCCGCGCTGCTGCTGAGGCGGAG..........................................................................................................................................................................................................2411.001.00-------------------------------1.00-----------------------
...................................................................................................................................................................CGGGTCGGCAGGAGGATAC....................................................................1911.001.00-------------------1.00-----------------------------------
.................................................GGTGAGGCGTCCGAGTGGC......................................................................................................................................................................................191.000.00----1.00--------------------------------------------------
............GGACAGCGCCGTGGCC..............................................................................................................................................................................................................................1620.500.50-------------------------------------------------0.50-----
...........TGGACAGCGCCGTGGC...............................................................................................................................................................................................................................1630.330.33--------------------------------------------------0.33----
...............................................................GGCTCCCGCCCCCCGC...........................................................................................................................................................................1680.120.12----------------------------------------------------0.12--

Antisense strand
GTCCGGCGGCGTGGACAGCGCCGTGGCCGCGCTGCTGCTGAGGCGGAGAGGTGAGGCGTCCGAGGCTCCCGCCCCCCGCCGAGCGAATGTGTCCCCGGAAACCTGTCCCCGTCCGTCGTGGCGTTGTGCACGTCTCCTCCCTCCCTGGGCCGCTGGTTGCGCGCGGGTCGGCAGGAGGATACCCCGTCCTCTGACTTTGGTTCGGAGGCTCCTCGCCCTCCACCTGTGTAGTCGGAGGTGTGCGCGACTG
............................................(((((.(((.(((((((((.((((..((.....)).))))...........((((............))))))).))))))...))).)))))..(((((((((.((((((....)).)))).))))..)))))........................................................................
............................................45.............................................................................................................................................188............................................................
SizePerfect hitTotal NormPerfect NormSRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR343337SRR343334SRR189785DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM532880(GSM532880)
G659T. (cervix)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR343336SRR040009(GSM532894)
G727T. (cervix)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR191484(GSM715594)
12genomic small RNA (size selected RNA from t. (breast)
SRR040007(GSM532892)
G601T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM532884(GSM532884)
G871T. (cervix)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
GSM532873(GSM532873)
G699N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577453(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
.................................................................................................................................................................................................................................GTGTAGTCGGAGGTGTCCG...... 192.000.00---2.00---------------------------------------------------
...................................................................CGCTCGGCGGGGGGCGGG..................................................................................................................................................................... 1811.001.00-----------------------------------------------1.00-------
...................................................................CCCGCCCCCCGCCGAGCGG.................................................................................................................................................................... 191.000.00----------------------------------------1.00--------------
.....................................................................................................CCTGTCCCCGTCCGTCGTGGCGTC............................................................................................................................. 241.000.00--------------------------1.00----------------------------
.................................................................CTCCCGCCCCCCGCCAACC...................................................................................................................................................................... 191.000.00---------------------1.00---------------------------------
................................................................................................................................CGGCCCAGGGAGGGAGGAGACGTG.................................................................................................. 2411.001.00----------------------------------1.00--------------------
...............................................................................................................................GCCCAGGGAGGGAGGAGACGTGC.................................................................................................... 2311.001.00-----------------------1.00-------------------------------
...........................................................................................TCCCCGGAAACCTGTCCATCT.......................................................................................................................................... 211.000.00-------------------------------------------1.00-----------
...............................................................................................................................GCACGTCTCCTCCCTCCCCT....................................................................................................... 201.000.00------------------1.00------------------------------------
...................................................................CCCGCCCCCCGCCGATTAG.................................................................................................................................................................... 191.000.00------------------------------------------------1.00------
................................................................CGGCGGGGGGCGGGAGC......................................................................................................................................................................... 1740.250.25---------------------------------------------------0.25---
...............................................................CGGGGGGCGGGAGCC............................................................................................................................................................................ 1590.110.11-----------------------------------------------------0.11-
...............................................................GGCTCCCGCCCCCCGAAA......................................................................................................................................................................... 180.110.00------------------------------------------------------0.11