ID: uc010xmh.1_intron_0_0_chr19_12274022_f.5p
GENE: (1)
chr19:12273972-12274221+


(7)
B-CELL 		(4)
BRAIN 		(9)
BREAST 		(17)
CELL-LINE 		(5)
CERVIX 		(3)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(18)
SKIN 		(1)
XRN.ip

Sense strand
GCCTTGGGATCCGGAGGGAGGAAGCTGGGACACCCGGGAGTCAGGAAATGGTGAGTGTGTCGGGCCCTGCGTCCCGAGACAGGGAGGAGGGGCTGGTTGGACGACCGGAACTGGCTGTGGCGCGGCCCGGGCCTTCCCGTGGGCGACTCTGGGTCTGCGTACCGAGTCCCTCTGGCGCAGCTCAGCCCTTGGTACCCTCGGCCTCAGGGTGGGGCTGGGCCGGCAGCCGGGACCCCGGGCGTCCTCGTCC
....................................................................................((..((..((((((....))))))..))..))...(((((((((((((((......))))....))))).))))))..........................................................................................
..................................................................................83............................................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038857(GSM458540)
D20. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR040017(GSM532902)
G645T. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
...........................................................................................................................................TGGGCGACTCTGGGTCTG.............................................................................................1814.004.00-4.00---------------------------------------------------------------------
.........TCCGGAGGGAGGAAGCTGG..............................................................................................................................................................................................................................1914.004.00--------------1.00---------------1.00------------------1.00-----1.00---------------
..............................................................................................................................CCGGGCCTTCCCGTGGATCG........................................................................................................203.000.00---------1.00--------------1.00---------------------------------------1.00------
...............................................................................................................................CGGGCCTTCCCGTGGATCG........................................................................................................1913.003.00---2.00-----------------------------------1.00-------------------------------
....................................................................................................................................................................................................................GGCTGGGCCGGCAGCGGG....................183.000.00-3.00---------------------------------------------------------------------
...............................................................................................................................CGGGCCTTCCCGTGG............................................................................................................1513.003.00-----2.00-----1.00-----------------------------------------------------------
............................................................................................................................GCCCGGGCCTTCCCGGAGT...........................................................................................................193.000.00--------2.00--------------------------------------1.00-----------------------
.........TCCGGAGGGAGGAAGCTGGG.............................................................................................................................................................................................................................2013.003.003.00----------------------------------------------------------------------
.......................................................................................AGGGGCTGGTTGGACGAC.................................................................................................................................................1812.002.00------2.00----------------------------------------------------------------
................GGAGGAAGCTGGGACAA.........................................................................................................................................................................................................................172.000.002.00----------------------------------------------------------------------
..................AGGAAGCTGGGACACCCGGGAGTCAG..............................................................................................................................................................................................................2612.002.00----2.00------------------------------------------------------------------
.......................................................................................AGGGGCTGGTTGGACGA..................................................................................................................................................1712.002.00--1.00------------1.00-------------------------------------------------------
................................................................................................................................................................ACCGAGTCCCTCTGGCGC........................................................................1812.002.00--2.00--------------------------------------------------------------------
..............................................................................................................................CCGGGCCTTCCCGTGGA...........................................................................................................172.000.00-----1.00-----1.00-----------------------------------------------------------
.........TCCGGAGGGAGGAAGTGT...............................................................................................................................................................................................................................181.000.00----------------------------1.00------------------------------------------
...TTGGGATCCGGAGGGAGGAAG..................................................................................................................................................................................................................................2111.001.00-------------1.00---------------------------------------------------------
...........CGGAGGGAGGAAGCTACC.............................................................................................................................................................................................................................181.000.00----------------------------------------1.00------------------------------
......................................................................................................GACCGGAACTGGCTGTGGCG................................................................................................................................2011.001.00--1.00--------------------------------------------------------------------
...............................................................................................................................CGGGCCTTCCCGTGGCTC.........................................................................................................1811.003.00---------------------------------1.00-------------------------------------
...................................................................................................GACGACCGGAACTGGCT......................................................................................................................................1711.001.00---------------------------1.00-------------------------------------------
......GGATCCGGAGGGAGGAAGC.................................................................................................................................................................................................................................1911.001.001.00----------------------------------------------------------------------
................................................................................................TTGGACGACCGGAACTG.........................................................................................................................................1711.001.00--------------------------------------------------------1.00--------------
............................................................CGGGCCCTGCGTCCCAGCA...........................................................................................................................................................................191.000.00-----------------------------------------------------1.00-----------------
.........TCCGGAGGGAGGAAGCTGGGACA..........................................................................................................................................................................................................................2311.001.00-------1.00---------------------------------------------------------------
...................................................................................................GACGACCGGAACTGGCTG.....................................................................................................................................1811.001.00---------------1.00-------------------------------------------------------
.......................................................................................AGGGGCTGGTTGGACGACC................................................................................................................................................1911.001.00---------------------------------------------------1.00-------------------
..............................................................................................................................CCGGGCCTTCCCGTGGATC.........................................................................................................191.000.00-------1.00---------------------------------------------------------------
...........................................................................................................................GGCCCGGGCCTTCCCGGAG............................................................................................................191.000.00---1.00-------------------------------------------------------------------
...............................................................................................GTTGGACGACCGGAACTGG........................................................................................................................................1911.001.00----------------------------------1.00------------------------------------
.............................................................................................................................................................................................................................GGCAGCCGGGACCCCGGGCGTAT......231.000.00------1.00----------------------------------------------------------------
..........................................................................................................................................GTGGGCGACTCTGGGTCTG.............................................................................................1911.001.00---------------------------------------------------------------1.00-------
..................AGGAAGCTGGGACACCCGGGAGTCAGG.............................................................................................................................................................................................................2711.001.00--------------------------------------------------1.00--------------------
................................................................................................................................................GACTCTGGGTCTGCGTGC........................................................................................181.000.00--------------------------------1.00--------------------------------------
...........................................................................................................................GGCCCGGGCCTTCCCGGAGT...........................................................................................................201.000.00-----------------------1.00-----------------------------------------------
.......................................................................TCCCGAGACAGGGAGGAGGGG..............................................................................................................................................................2111.001.00---------------------1.00-------------------------------------------------
...........................................................................................................................GGCCCGGGCCTTCCCGGA.............................................................................................................181.000.00--------------------------------------1.00--------------------------------
.............................................................................................................................................................CGTACCGAGTCCCTCTGGC..........................................................................1911.001.00---------1.00-------------------------------------------------------------
.............................................................................GACAGGGAGGAGGGGCTGGTTG.......................................................................................................................................................2211.001.00--------------------1.00--------------------------------------------------
................................................................................................................................................................................................................GTGGGGCTGGGCCGGCAGCCGGA...................231.000.00---------------------------------------------------------1.00-------------
.........TCCGGAGGGAGGAAGCA................................................................................................................................................................................................................................171.000.00------------1.00----------------------------------------------------------
..............................................................................................................................CCGGGCCTTCCCGTG.............................................................................................................1511.001.00-----------------------------------------------------------1.00-----------
............................................................................AGACAGGGAGGAGGGGCTGGTTGGACG...................................................................................................................................................2711.001.00-----------------1.00-----------------------------------------------------
..................................CGGGAGTCAGGAAATGGTGAGTG.................................................................................................................................................................................................2311.001.00----------------------------------------------------------1.00------------
.............................................................................................................................................................................................................AGGGTGGGGCTGGGCCGGCA.........................2041.001.00------------------------------------------------------------1.00----------
.............................................................................................................................................GGCGACTCTGGGTCTGAGTG.........................................................................................201.000.00------------------------------------1.00----------------------------------
........................CTGGGACACCCGGGAGTCAGGAAATGG.......................................................................................................................................................................................................2711.001.00-----------------------------------------1.00-----------------------------
...........................................................................................................................GGCCCGGGCCTTCCCGG..............................................................................................................171.000.00--------------------------------------------------------------1.00--------
.....................................................................................................................................................................................................................GCTGGGCCGGCAGCCGGGAAC................211.000.00--------------------------1.00--------------------------------------------
........................................................................................................................................................GTCTGCGTACCGAGTCCCTCTGGC..........................................................................2411.001.00----------------1.00------------------------------------------------------
................................................................................................................................GGGCCTTCCCGTGGGTGAC.......................................................................................................191.000.00-------------------------------------------------------------1.00---------
............GGAGGGAGGAAGCTGGATAG..........................................................................................................................................................................................................................201.000.00-------------------------------------1.00---------------------------------
.....................................................................................GGAGGGGCTGGTTGGCTT...................................................................................................................................................181.000.00-----------------------------1.00-----------------------------------------
...........................................................................................................................................................................CTGGCGCAGCTCAGCCCTTGG..........................................................2111.001.00-------------1.00---------------------------------------------------------
...............................................ATGGTGAGTGTGTCGGGC.........................................................................................................................................................................................1811.001.00-------------------------------------------1.00---------------------------
.....................................................................................................................................................................................................................GCTGGGCCGGCAGCCGGGATTT...............221.000.00----1.00------------------------------------------------------------------
...................................................................................................GACGACCGGAACTGGCTGTGGCG................................................................................................................................2311.001.001.00----------------------------------------------------------------------
....................................................................................................................................CTTCCCGTGGGCGACTCTGGGTCTGC............................................................................................2611.001.00-------------------1.00---------------------------------------------------
...............................................................................................................TGGCTGTGGCGCGGCCCG.........................................................................................................................1811.001.00----------------------------------------------------1.00------------------
.................................................................................GGGAGGAGGGGCTGGTTGAGGG...................................................................................................................................................221.000.00----------------------1.00------------------------------------------------
...........................................................................................................................GGCCCGGGCCTTCCCGGAGA...........................................................................................................201.000.00---1.00-------------------------------------------------------------------
.................................................................................................................................................ACTCTGGGTCTGCGTGA........................................................................................171.000.00-------------------------1.00---------------------------------------------
.............GAGGGAGGAAGCTGGGACAC.........................................................................................................................................................................................................................2011.001.00--------------1.00--------------------------------------------------------
................................................................................AGGGAGGAGGGGCTGGTTG.......................................................................................................................................................1911.001.00---------------------------------------------1.00-------------------------
....................................................................................................ACGACCGGAACTGGCTG.....................................................................................................................................1711.001.00------------------------------------------------1.00----------------------
...................................................................................................................................................................................................................................CGGGACCCCGGGCGTAGA.....181.000.00----------------------------------------------1.00------------------------
................................................................................................................................................................ACCGAGTCCCTCTGGCGCA.......................................................................1911.001.00------------------------------------------------------1.00----------------
.....................................................................................................................................................................................................................GCTGGGCCGGCAGCCGGGACCT...............221.000.00--------------------------------------------1.00--------------------------
.........TCCGGAGGGAGGAAGCGCGG.............................................................................................................................................................................................................................201.000.00------------1.00----------------------------------------------------------
.............GAGGGAGGAAGCTGGGACACCCGGGAGCA................................................................................................................................................................................................................291.000.00------------------------------------------1.00----------------------------
.................................................................................................................................................................................................................TGGGGCTGGGCCGGCGG........................171.000.00-------------------------------1.00---------------------------------------
................................................................................................................................GGGCCTTCCCGTGGGTTG........................................................................................................181.000.00----------1.00------------------------------------------------------------
...........CGGAGGGAGGAAGCTGG..............................................................................................................................................................................................................................1740.500.500.50----------------------------------------------------------------------
...............................................ATGGTGAGTGTGTCGGG..........................................................................................................................................................................................1720.500.50------------------------------------------------------------------0.50----
..........CCGGAGGGAGGAAGCTGG..............................................................................................................................................................................................................................1820.500.50-------------------------------------------------------------------0.50---
.............................................................................................................................................................................................................AGGGTGGGGCTGGGCCGG...........................1860.170.17----------------------------------------------------------------------0.17
.............................................................................................................................................................................................................AGGGTGGGGCTGGGCCGGC..........................1960.170.17---------------------------------------------------------------------0.17-

Antisense strand
GCCTTGGGATCCGGAGGGAGGAAGCTGGGACACCCGGGAGTCAGGAAATGGTGAGTGTGTCGGGCCCTGCGTCCCGAGACAGGGAGGAGGGGCTGGTTGGACGACCGGAACTGGCTGTGGCGCGGCCCGGGCCTTCCCGTGGGCGACTCTGGGTCTGCGTACCGAGTCCCTCTGGCGCAGCTCAGCCCTTGGTACCCTCGGCCTCAGGGTGGGGCTGGGCCGGCAGCCGGGACCCCGGGCGTCCTCGTCC
....................................................................................((..((..((((((....))))))..))..))...(((((((((((((((......))))....))))).))))))..........................................................................................
..................................................................................83............................................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040037(GSM532922)
G243T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038857(GSM458540)
D20. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR040017(GSM532902)
G645T. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
....................GAAGCTGGGACACCCAAC.................................................................................................................................................................................................................... 181.000.00----------1.00------------------------------------------------------------
.....................................................................................................................................................................................................TCGGCCTCAGGGTGGCCG................................... 181.000.00-----------------------------------1.00-----------------------------------
..............................................................................................................................................................CTGCGCCAGAGGGACTCGGTAC...................................................................... 2211.001.00-----------------------------------------------------------------1.00-----
...........................................................................................................................................................TGCGCCAGAGGGACTCGGTACGCA....................................................................... 2411.001.00------------------1.00----------------------------------------------------
..............................................................................................................................................................................AAGGGCTGAGCTGCGC............................................................ 1650.200.20--------------------------------------------------------------------0.20--