ID: uc010xjm.1_intron_7_0_chr19_7516153_f.3p
GENE: ARHGEF18(8)
chr19:7518153-7518402+


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(6)
BRAIN 		(2)
BREAST 		(13)
CELL-LINE 		(2)
HEART 		(1)
HELA 		(4)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
TESTES

Sense strand
TCTCAGGAGATTACATTTGGGAAGTGATCTTGAGGGTCTTCTGAGTGGTGGCCTTGGAGAACACACCTCATAGATCCCACACGCCCATACATAGTGTGTCCACACACCTCATAGATCCACATGTCCATACATAGTGAGTGTGTCCACTTCTGTTGTGTTAAAGTGGAAAAGAAAGACGCTAACTCTGCTATGTGTGGCAGCTGGCACTGAGGACTATGAAGACCTGACCCAGGCCTTGAACCTCATCAAA
.........................................................................................................................((.((((((((((((((((((((...(((..((.......))..)))......)))))..)))).)))))))))))))...................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189786SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCAT..................................................22111.004.002.001.00----1.00-2.00-2.00--1.00------------------------1.00--------1.00--------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCAG..................................................22110.0010.005.00--1.00------------1.00------1.00------------------------1.00--1.00----
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCAGT.................................................23110.0010.005.00--1.00-------1.002.00------------------------------------1.00------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGC....................................................2016.006.00-------1.00------------1.00----1.00-------1.00-------1.00-----------1.00--
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCATT.................................................2316.004.00-----------------1.001.00---------------1.00-1.00---1.00--1.00------------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCA...................................................2114.004.00-1.00-------1.00------------1.00--------1.00------------------------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCAA..................................................2213.004.00-1.00----1.00-----------------------1.00-------------------------
...............................................................................................................................................................................................................TGAGGACTATGAAGACCTGACCCAGGA................272.000.00--2.00-----------------------------------------------------
........................................................................................................................................................................................................CTGGCACTGAGGACTATGAAGACCTG........................2612.002.00-----2.00--------------------------------------------------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCAGA.................................................2312.0010.00-----------1.00--------------------------------1.00-----------
.....................................................................................................................................................................................ACTCTGCTATGTGTGGCA...................................................1812.002.00----2.00---------------------------------------------------
...........................................................................................................................................................................AAAGACGCTAACTCTGCTATGTG........................................................2312.002.00--------------------------1.00-----------------------1.00-----
............................................................................................................................................................................................................CACTGAGGACTATGAAGACC..........................2012.002.00----------------------------1.00-------------1.00-------------
..............................................................................................................................................................................................................................CCTGACCCAGGCCTTGAA..........1811.001.00---------------------------------------1.00----------------
...........................................................................................................................................................................AAAGACGCTAACTCTGCTATGT.........................................................2211.001.00---------------------------1.00----------------------------
.......................................................................................................................................................................................................GCTGGCACTGAGGACTATGAAGACCTGACCC....................3111.001.00--------------------------------1.00-----------------------
........................................................................................................................................................................................................CTGGCACTGAGGACTATGAAGAC...........................2311.001.00---------1.00----------------------------------------------
...............................................................................................................................................................................................................TGAGGACTATGAAGACCTGACCCAGGC................2711.001.00--1.00-----------------------------------------------------
.........................................................................................................................TGTCCATACATAGTGAGTGT.............................................................................................................2011.001.00-------1.00------------------------------------------------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCATTA................................................2411.004.00---------------------1.00----------------------------------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGTCTA..................................................221.000.00-----------------------------------1.00--------------------
................................................................................................................................................................AAGTGGAAAAGAAAGAAAGT......................................................................201.000.00-----------------------------1.00--------------------------
...........................................................................................................................................................................................................GCACTGAGGACTATGAAGACCTGA.......................2411.001.00----------------------------------------------------1.00---
...............................................................................................................................................................................................................TGAGGACTATGAAGACCTGA.......................2011.001.00-------------------------------------1.00------------------
.................................................................................................................................................................................................................AGGACTATGAAGACCTGACCCAGGCCTTG............2911.001.00----------------------------------------------1.00---------
......................................................................................................................................................................................................AGCTGGCACTGAGGACTATGAAGAC...........................2511.001.00--1.00-----------------------------------------------------
.........................................................................................................................................................................AGAAAGACGCTAACTCTGCTATGTG........................................................2511.001.00-------------1.00------------------------------------------
...................................................................................................................................................................................TAACTCTGCTATGTGTGGCAGT.................................................221.000.00---1.00----------------------------------------------------
.........................................................................................................................................................................................................................GAAGACCTGACCCAGGCCTTGAACC........2511.001.00-------------------1.00------------------------------------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGTAT..................................................221.000.00-1.00------------------------------------------------------
..................................................................................................................................................................................CTAACTCTGCTATGTGTGGCAGG.................................................2311.0010.00---------------1.00----------------------------------------
............................................................................................................................................................................................................CACTGAGGACTATGAAGACCTGACCCAGGCCT..............3211.001.00------------------------1.00-------------------------------
.................................................................................................................................................................................................................AGGACTATGAAGACCTGACCC....................2111.001.00--------------1.00-----------------------------------------
...............................................................................................................................................................................................................TGAGGACTATGAAGAAGAG........................191.000.00---------------------------------------------1.00----------
...................................................................................................CCACACACCTCATAG........................................................................................................................................1550.200.20-------------------------------------------------------0.20

Antisense strand
TCTCAGGAGATTACATTTGGGAAGTGATCTTGAGGGTCTTCTGAGTGGTGGCCTTGGAGAACACACCTCATAGATCCCACACGCCCATACATAGTGTGTCCACACACCTCATAGATCCACATGTCCATACATAGTGAGTGTGTCCACTTCTGTTGTGTTAAAGTGGAAAAGAAAGACGCTAACTCTGCTATGTGTGGCAGCTGGCACTGAGGACTATGAAGACCTGACCCAGGCCTTGAACCTCATCAAA
.........................................................................................................................((.((((((((((((((((((((...(((..((.......))..)))......)))))..)))).)))))))))))))...................................................
....................................................................................................................117................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189786SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785
.......................................................................AGATCCCACACGCCCATACATAGTGCTG....................................................................................................................................................... 281.000.00------------------------------------------------------1.00-