ID: uc010tcm.1_intron_22_0_chr13_20133270_r.3p
GENE: (1)
chr13:20133220-20133469-


(1)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
UTERUS

Sense strand
AGACTCTATTTTAATGTATATTTGCTGCAAAGAGAAACCACTTTTGGTTTTGAATCTTTAATGAGAAAAAATATATATACTATCGAGCTCAAAAAGAAAATTGTGGAATGCATGATTGACAATGTATTTTTTATTTCTATTTTTTCAAGTAATGCCAGTACTGTTACAGCCAGCACTGACTAAAATTTTTATATTTTCAGAGTTGACGCTGGTGAAGACATTCATGATTTAAACACCAGATCCTGAAATG
.................................................................................................((((...(((((((((........)))))))))..))))..................................................................................................................
.................................................................................................98.......................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR189782SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR343335SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189783SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
..................................................................................................................................TTATTTCTATTTTTTCATTAG...................................................................................................21150.000.0054.0048.0025.0022.001.00-------------------------
...................................................................................................................................TATTTCTATTTTTTCATTAG...................................................................................................2019.000.0010.004.004.001.00--------------------------
..................................................................................................................................TTATTTCTATTTTTTCATTAT...................................................................................................217.000.003.002.001.001.00--------------------------
..................................................................................................................................TTATTTCTATTTTTTCACTAG...................................................................................................215.000.00--1.002.002.00-------------------------
..................................................................................................................................TTATTTCTATTTTTTCATTA....................................................................................................204.000.003.00-1.00---------------------------
.............................................................................................................................ATTTTTTATTTCTATTTTTTTTGC.....................................................................................................243.000.00-----1.00-----2.00------------------
..................................................................................................................................TTATTTCTATTTTTTCATCAG...................................................................................................212.000.00--1.001.00--------------------------
............AATGTATATTTGCTGCAAAGAGAAACC...................................................................................................................................................................................................................2732.002.00------0.67--0.67----------0.33-----0.33---
...................................................................................................................................TATTTCTATTTTTTCATCAG...................................................................................................202.000.00---2.00--------------------------
.............................................................................................................................ATTTTTTATTTCTATTTTTTTCGC.....................................................................................................242.000.00-----2.00------------------------
..ACTCTATTTTAATGTATACTTG..................................................................................................................................................................................................................................222.000.00-------------2.00----------------
...............................................................................................................................TTTTTATTTCTATTTTTTCAA......................................................................................................2121.501.50----1.50-------------------------
..ACTCTATTTTAATGTATATTTGCTGCAAAG..........................................................................................................................................................................................................................3031.331.33--------1.33---------------------
......................................................................................................GTGGAATGCATGATTGGGGT................................................................................................................................201.000.00--------1.00---------------------
......................................................................................................................................................................................................................................AAACACCAGATCCTGGGT..181.000.00---------------1.00--------------
...............................................................................................................................TTTTTATTTCTATTTTTTCG.......................................................................................................201.000.00--1.00---------------------------
......................................................................................................GTGGAATGCATGATTGACAATATC............................................................................................................................241.000.00--------------1.00---------------
.............................................................................................................................ATTTTTTATTTCTATTTTTTTAAG.....................................................................................................241.000.00---1.00--------------------------
.................................................................................................AAATTGTGGAATGCATGATTGACAATACA............................................................................................................................291.000.00-----------1.00------------------
..............................................................................................................................TTTTTTATTTCTATTTCCAT........................................................................................................201.000.00--1.00---------------------------
..............................................................................................................................TTTTTTATTTCTATTTTTTGCTC.....................................................................................................231.000.00-----1.00------------------------
................................................................................................................................TTTTATTTCTATTTTTTAAAG.....................................................................................................211.000.00---1.00--------------------------
.................................................................................................................................................................................................TTTTCAGAGTTGACGATC.......................................181.000.00----------------1.00-------------
.................................................................................................AAATTGTGGAATGCATGATTGAC..................................................................................................................................2331.001.00------1.00-----------------------
...................................................................................................................................TATTTCTATTTTTTCACTA....................................................................................................191.000.00-----1.00------------------------
..............................................................................................................................TTTTTTATTTCTATTTTCAT........................................................................................................201.000.00----1.00-------------------------
...............................................................................................................................................TTCAAGTAATGCCAGACA.........................................................................................181.000.00------------------1.00-----------
.......................................................................................................TGGAATGCATGATTGACAAT...............................................................................................................................2030.670.67------0.67-----------------------
...........TAATGTATATTTGCTGCAAAGAGAAACC...................................................................................................................................................................................................................2830.670.67------0.33--0.33--------------------
..ACTCTATTTTAATGTATATTTGCTGCAA............................................................................................................................................................................................................................2830.670.67--------0.67---------------------
..ACTCTATTTTAATGTATATTTG..................................................................................................................................................................................................................................2230.670.67--------0.67---------------------
...............GTATATTTGCTGCAAAGAGAAACC...................................................................................................................................................................................................................2430.670.67------0.33-------------0.33---------
............AATGTATATTTGCTGCAAAGAGAAAC....................................................................................................................................................................................................................2630.670.67------0.33--0.33--------------------
............AATGTATATTTGCTGCAAAGAGA.......................................................................................................................................................................................................................2330.670.67------0.33------------------0.33----
...........TAATGTATATTTGCTGCAAAGAGAA......................................................................................................................................................................................................................2530.330.33---------0.33--------------------
..................................................................................................AATTGTGGAATGCATGATTG....................................................................................................................................2030.330.33---------------------0.33--------
......................................................................................................GTGGAATGCATGATTGACA.................................................................................................................................1930.330.33-----------------------0.33------
..............TGTATATTTGCTGCAAAGAGA.......................................................................................................................................................................................................................2130.330.33---------0.33--------------------
...................................................................................................ATTGTGGAATGCATGATTGAC..................................................................................................................................2130.330.33---------------------------0.33--
..........TTAATGTATATTTGCTGCAAAGAGAAAC....................................................................................................................................................................................................................2830.330.33------0.33-----------------------
.......................................................................................................TGGAATGCATGATTGACA.................................................................................................................................1830.330.33-------------------0.33----------
....TCTATTTTAATGTATATTTGCTGCA.............................................................................................................................................................................................................................2530.330.33---------0.33--------------------
.................................................................................................AAATTGTGGAATGCATGATTGACA.................................................................................................................................2430.330.33--------------0.33---------------
...............GTATATTTGCTGCAAAGA.........................................................................................................................................................................................................................1830.330.33------0.33-----------------------
............AATGTATATTTGCTGCAAAGAG........................................................................................................................................................................................................................2230.330.33------------------------0.33-----
....................................................................................................TTGTGGAATGCATGATTGACA.................................................................................................................................2130.330.33----------------------0.33-------
..........TTAATGTATATTTGCTGCA.............................................................................................................................................................................................................................1930.330.33------0.33-----------------------
...........TAATGTATATTTGCTGCAAAGAGAAAC....................................................................................................................................................................................................................2730.330.33---------0.33--------------------
............AATGTATATTTGCTGCA.............................................................................................................................................................................................................................1740.250.25---------0.25--------------------
............................................................................................................................................................................................................................TTCATGATTTAAACACCAGATC........2240.250.25----------------------------0.25-
.....................................................................................................................................................................................................................................TAAACACCAGATCCTGAAA..1940.250.25-------------------0.25----------
....................................................................................................TTGTGGAATGCATGATTG....................................................................................................................................1840.250.25-------------------0.25----------
.................................................................................................AAATTGTGGAATGCATG........................................................................................................................................1750.200.20-----------------------------0.20
..................TATTTGCTGCAAAGAG........................................................................................................................................................................................................................1690.110.11---------0.11--------------------

Antisense strand
AGACTCTATTTTAATGTATATTTGCTGCAAAGAGAAACCACTTTTGGTTTTGAATCTTTAATGAGAAAAAATATATATACTATCGAGCTCAAAAAGAAAATTGTGGAATGCATGATTGACAATGTATTTTTTATTTCTATTTTTTCAAGTAATGCCAGTACTGTTACAGCCAGCACTGACTAAAATTTTTATATTTTCAGAGTTGACGCTGGTGAAGACATTCATGATTTAAACACCAGATCCTGAAATG
.................................................................................................((((...(((((((((........)))))))))..))))..................................................................................................................
.................................................................................................98.......................................................155.............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR189782SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189785SRR343335SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189783SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
.........................................................................................................................................TATTTTTTCAAGTAATAAG.............................................................................................. 196.000.00-------4.00----2.00-----------------
............................................TGGTTTTGAATCTTTGT............................................................................................................................................................................................. 173.000.00----------3.00-------------------
.....................................................................................................................................TTTCTATTTTTTCAAGAAAA................................................................................................. 201.000.00-----------------1.00------------
.......................................................ATTTTTTCTCATTAAAG.................................................................................................................................................................................. 1770.140.14-------0.14----------------------