ID: uc010sxh.1_intron_6_0_chr12_109331114_r.3p
GENE: SVOP(9)
chr12:109331064-109331313-


(5)
CELL-LINE
(4)
CERVIX
(1)
HEART
(3)
LIVER
(2)
OTHER
(12)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CCCTGGACATGGCTGGGTTCTGGCTGGAGGGGCTGGGAGGCTGCGTCCTGTAGATTTGAGACCTGGGTTCTCAGAGCTCCAGTGTCCTACTTACTAGAAACCTTCCTCCCAGCCTGGTGTGCACTAGTCTCAGGCCACCAGCCCATCTCCCGTGCATCTGTAGGGGAGAGAATAAACACTATGTCCTTGTTTTGAAACAGGAAGACCGAGGCAAAATGAGGGACCTTTTCACACCCCATTTTAGATGGAC
...........................................................(((((((((((...)))).)))).)))...........................((((((.((.((......))))))))))......((((.(((....))).))))...................................................................................
..................................................51..................................................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR040041(GSM532926)
G612T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038863(GSM458546)
MM603. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040023(GSM532908)
G575T. (cervix)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
........................................................TGAGACCTGGGTTCTGAGC...............................................................................................................................................................................1944.000.0010.009.008.006.001.001.002.00----1.00---1.001.00---1.001.001.00--1.00------
........................................................TGAGACCTGGGTTCTGAG................................................................................................................................................................................184.000.002.00--------1.00-------1.00--------------
.......................................................................................................................................................GTGCATCTGTAGGGGTAA.................................................................................182.000.00----2.00---------------------------
........................................................TGAGACCTGGGTTCTGAGA...............................................................................................................................................................................191.000.00--------------1.00-----------------
........................................................TGAGACCTGGGTTCTGTGC...............................................................................................................................................................................191.000.001.00-------------------------------
.................................TGGGAGGCTGCGTCCGCA.......................................................................................................................................................................................................181.000.00------------1.00-------------------
...........................................................................................................................................................ATCTGTAGGGGAGAGTGT.............................................................................181.000.00----------1.00---------------------
..CTGGACATGGCTGGGGGGC.....................................................................................................................................................................................................................................191.000.00-------------1.00------------------
.........................................TGCGTCCTGTAGATTTGGCC.............................................................................................................................................................................................201.000.00-------------------1.00------------
........................TGGAGGGGCTGGGAGGCTCTG.............................................................................................................................................................................................................211.000.00-----------------------1.00--------
........................................................................................................................................................................................................GAAGACCGAGGCAAAGCT................................181.000.00--------1.00-----------------------
............................................................................................................................................................................................GTTTTGAAACAGGAAGAC............................................1830.330.33---------------------------0.33----
.......................CTGGAGGGGCTGGGAGGC.................................................................................................................................................................................................................1840.250.25----------------------------0.25---

Antisense strand
CCCTGGACATGGCTGGGTTCTGGCTGGAGGGGCTGGGAGGCTGCGTCCTGTAGATTTGAGACCTGGGTTCTCAGAGCTCCAGTGTCCTACTTACTAGAAACCTTCCTCCCAGCCTGGTGTGCACTAGTCTCAGGCCACCAGCCCATCTCCCGTGCATCTGTAGGGGAGAGAATAAACACTATGTCCTTGTTTTGAAACAGGAAGACCGAGGCAAAATGAGGGACCTTTTCACACCCCATTTTAGATGGAC
...........................................................(((((((((((...)))).)))).)))...........................((((((.((.((......))))))))))......((((.(((....))).))))...................................................................................
..................................................51..................................................................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR040041(GSM532926)
G612T. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR040029(GSM532914)
G026T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR038863(GSM458546)
MM603. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040023(GSM532908)
G575T. (cervix)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
.....................GGCTGGAGGGGCTGGGAGGCTTC.............................................................................................................................................................................................................. 231.000.00-1.00------------------------------
..................................................................GTTCTCAGAGCTCCAGGG...................................................................................................................................................................... 181.000.00------------------------1.00-------
.............................................................CCTGGGTTCTCAGAGCTCG.......................................................................................................................................................................... 191.000.00-------1.00------------------------
.......................................................................TAGTAAGTAGGACACTGGAGCTCTG.......................................................................................................................................................... 2511.001.00-----1.00--------------------------
................................................................................................................................................................................................................................CTTTTCACACCCCATACTT....... 191.000.00------------------1.00-------------
.............................................................CCTGGGTTCTCAGAGCCTCG......................................................................................................................................................................... 200.500.00-----------------------------0.250.25-
.......................................................................AGGACACTGGAGCTCTG.................................................................................................................................................................. 1720.500.50--------------------------0.50-----
.............................................................GCTCTGAGAACCCAGG............................................................................................................................................................................. 1640.500.50-------0.25-----------------------0.25