ID: uc010snr.1_intron_4_0_chr12_52647550_r.3p
GENE: AK300121(4)
chr12:52647500-52647749-


(14)
BRAIN 		(16)
BREAST 		(1)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(6)
LIVER 		(7)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
TCCAAGTCCTCTAGGCTCAGGACTCTGGGCTTGAGGAGTCCTGAGGGGGTCCCAGGGTTGAGGTGGAAGACTGTAACTGGGAGGGTGGGGCTTCAGACATCGAAGAAGCAGGGAAAGGGGACAAGGGATGATGATGAGGGTGGGCTACCAAGAGTAGGGCTCTGGTCTAAGAAGCTCTTGCCACTCCCCATCTCCTGCAGGAGATCCGCGTTCTCCAGTCGCACATCTCAGACACCTCAGTGGTCGTCAA
..................................................(((..(((((.(((.....))).)))))...........(((((..........))))).......)))...................................................................................................................................
..................................................51..........................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189784GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577739(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334TAX577580(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189786GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040008(GSM532893)
G727N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040038(GSM532923)
G531N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577453(Rovira)
total RNA. (breast)
..........................................................TGAGGTGGAAGACTGTATAG............................................................................................................................................................................20221.502.5013.002.001.001.500.500.50--0.50-0.50------0.50------0.50---0.50---0.50--------------------
..........................................................TGAGGTGGAAGACTGTATAGT...........................................................................................................................................................................2129.502.500.501.001.00---0.50--1.000.50--0.50---0.50--0.500.500.50--0.50-------0.500.50--0.50--------------0.50
..........................................................TGAGGTGGAAGACTGTAGAG............................................................................................................................................................................2027.002.501.001.001.000.50-------0.50----0.50-----1.00-------0.500.50-----0.50---------------
..........................................................TGAGGTGGAAGACTGTAGAGC...........................................................................................................................................................................2125.002.50-0.501.00-----1.000.50---------0.50----------0.50--1.00-------------------
..........................................................TGAGGTGGAAGACTGTAGAGT...........................................................................................................................................................................2125.002.50-1.501.50--0.50---0.501.00------------------------------------------
..........................................................TGAGGTGGAAGACTGTATCTC...........................................................................................................................................................................2124.502.500.50--1.50--0.50------0.50--------0.50---------0.50--0.50-----------------
..........................................................TGAGGTGGAAGACTGTATAT............................................................................................................................................................................2023.502.501.000.50---0.50---0.50------------------0.50--0.50---------------------
..........................................................TGAGGTGGAAGACTGTATCG............................................................................................................................................................................2023.502.501.500.50-1.00-------0.50-----------------------------------------
..........................................................TGAGGTGGAAGACTGTAGCGC...........................................................................................................................................................................2123.502.50-0.50-0.50--0.50--1.00----0.50-0.50------------------------------------
..........................................................TGAGGTGGAAGACTGTATAGC...........................................................................................................................................................................2123.502.50-0.50-0.50---------0.500.50------0.50----0.50-----------0.50--------------
...............................................................................................................................................................................................................GCGTTCTCCAGTCGCCGAT........................193.000.00-------2.00-------------------1.00-------------------------
..........................................................TGAGGTGGAAGACTGTATATC...........................................................................................................................................................................2123.002.50-0.500.50-----0.50-0.50--0.50-----0.50---------------------------------
..........................................................TGAGGTGGAAGACTGTA...............................................................................................................................................................................1722.502.50--0.50--------0.50------------0.50---------1.00------------------
..........................................................TGAGGTGGAAGACTGTAGCTC...........................................................................................................................................................................2122.502.50---1.00----0.500.50------0.50------------------------------------
..........................................................TGAGGTGGAAGACTGTAGAT............................................................................................................................................................................2022.502.50-0.50----0.50---0.50--------------0.50-----------------------0.50---
..........................................................TGAGGTGGAAGACTGTATATT...........................................................................................................................................................................2122.502.50-0.50------0.500.50--------------0.50-----------0.50----------------
..........................................................TGAGGTGGAAGACTGTAGATC...........................................................................................................................................................................2122.502.500.50--0.50---------0.50--0.50---0.50--------------------------------
..........................................................TGAGGTGGAAGACTGTATCGC...........................................................................................................................................................................2122.502.50--1.000.50------0.50---------0.50--------------------------------
..........................................................TGAGGTGGAAGACTGTAGGGC...........................................................................................................................................................................2122.002.50-0.50----------------------0.500.50----------------------0.50----
..........................................................TGAGGTGGAAGACTGTATGGC...........................................................................................................................................................................2122.002.50--0.50---0.50----0.50--------------0.50--------------------------
..........................................................TGAGGTGGAAGACTGTAGAGA...........................................................................................................................................................................2122.002.50-0.50---0.500.50----0.50-----------------------------------------
..........................................................TGAGGTGGAAGACTGTAGA.............................................................................................................................................................................1922.002.50--1.00-----0.50-----0.50--------------------------------------
............................................................AGGTGGAAGACTGTAGGC............................................................................................................................................................................182.000.00------------2.00----------------------------------------
..........................................................TGAGGTGGAAGACTGTAGATA...........................................................................................................................................................................2122.002.50-----1.00-----0.50--------------0.50--------------------------
...............................................................................................................................................................................................................GCGTTCTCCAGTCGCCGCT........................192.000.00-------1.00-------------------1.00-------------------------
..........................................................TGAGGTGGAAGACTGTAAAGTT..........................................................................................................................................................................2212.001.00-1.00-------------1.00-------------------------------------
..........................................................TGAGGTGGAAGACTGTAC..............................................................................................................................................................................1821.502.500.500.50------------0.50--------------------------------------
..........................................................TGAGGTGGAAGACTGTAGCG............................................................................................................................................................................2021.502.500.50------------0.50---------------------0.50-----------------
..........................................................TGAGGTGGAAGACTGTATCTA...........................................................................................................................................................................2121.502.50--------0.50----0.50---0.50-----------------------------------
..........................................................TGAGGTGGAAGACTGTATGG............................................................................................................................................................................2021.502.501.00---------------------------0.50------------------------
..........................................................TGAGGTGGAAGACTGTAGCGT...........................................................................................................................................................................2121.502.50--0.50--0.50-------------0.50---------------------------------
..........................................................TGAGGTGGAAGACTGTAGGG............................................................................................................................................................................2021.502.50-----------0.50----0.50-------------0.50----------------------
..........................................................TGAGGTGGAAGACTGTATAGG...........................................................................................................................................................................2121.502.501.50----------------------------------------------------
..........................................................TGAGGTGGAAGACTGTAA..............................................................................................................................................................................1811.001.00----------1.00------------------------------------------
..........................................................TGAGGTGGAAGACTGTAGCT............................................................................................................................................................................2021.002.50-0.50-----------------0.50---------------------------------
.............................................................................................................................GGATGATGATGAGGGAGA...........................................................................................................181.000.00-----------------------1.00-----------------------------
...............................................................................................................GGAAAGGGGACAAGGGGGTT.......................................................................................................................201.000.00-------1.00---------------------------------------------
..........................................................TGAGGTGGAAGACTGTGGCT............................................................................................................................................................................201.000.00---1.00-------------------------------------------------
................................................................................................ACATCGAAGAAGCAGCTA........................................................................................................................................181.000.00-----------------------------------------------1.00-----
..........................................................TGAGGTGGAAGACTGTAGAA............................................................................................................................................................................2021.002.50-----0.50-------------------------------0.50---------------
....................................................................................................................................GATGAGGGTGGGCTAAGCG...................................................................................................191.000.00----------------------------------------1.00------------
..................................................................................................................................................................................................................TTCTCCAGTCGCACATTT......................181.000.001.00----------------------------------------------------
.................................................................................................................................................................................................................GTTCTCCAGTCGCACGA........................171.000.00----1.00------------------------------------------------
..........................................................TGAGGTGGAAGACTGTGTGG............................................................................................................................................................................201.000.00------1.00----------------------------------------------
..........................................................TGAGGTGGAAGACTGGAGA.............................................................................................................................................................................191.000.00-1.00---------------------------------------------------
............................................................................................................................................................................................................TCCGCGTTCTCCAGTCATAC..........................201.000.00------------------------------------1.00----------------
......................................................GGGTTGAGGTGGAAGAGTTC................................................................................................................................................................................201.000.00-----------------------1.00-----------------------------
..........................................................TGAGGTGGAAGACTGTAACGT...........................................................................................................................................................................211.000.00------1.00----------------------------------------------
...................................................................................................................................................................................................................TCTCCAGTCGCACATTT......................171.000.00---------------1.00-------------------------------------
.........................................................................................................................................................................................................................................ACCTCAGTGGTCGTCACGCT201.000.00---------------------------------------------1.00-------
..........................................................TGAGGTGGAAGACTGTAGATT...........................................................................................................................................................................2121.002.50-----0.50-----0.50-----------------------------------------
..........................................................TGAGGTGGAAGACTGTATAGA...........................................................................................................................................................................2121.002.50------0.50-------------------------0.50--------------------
..........................................................TGAGGTGGAAGACTGTGTAG............................................................................................................................................................................201.000.00---------------------------------------1.00-------------
..........................................................TGAGGTGGAAGACTGTAGGT............................................................................................................................................................................2021.002.50------0.50---------------------0.50------------------------
..........................................................TGAGGTGGAAGACTGTAAAGGT..........................................................................................................................................................................2211.001.00---------------------1.00-------------------------------
............................................................................................................................................................................................................TCCGCGTTCTCCAGTCGCCGT.........................211.000.00------------------------------------------1.00----------
..........................................................TGAGGTGGAAGACTGTCGCG............................................................................................................................................................................201.000.00-----------------1.00-----------------------------------
..........................GGGCTTGAGGAGTCCTCCC.............................................................................................................................................................................................................191.000.00-----------------------------------------1.00-----------
...............................................................................................................................................................................................................GCGTTCTCCAGTCGCCGA.........................181.000.00-------1.00---------------------------------------------
.................................................................................................................................................................................................................GTTCTCCAGTCGCACGATC......................191.000.00---1.00-------------------------------------------------
..........................................................TGAGGTGGAAGACTGTGGCG............................................................................................................................................................................201.000.00-1.00---------------------------------------------------
.................................................................GAAGACTGTAACTGGTGA.......................................................................................................................................................................181.000.00-----1.00-----------------------------------------------
..........................................................TGAGGTGGAAGACTGTACAT............................................................................................................................................................................2020.502.50-----------0.50-----------------------------------------
..........................................................TGAGGTGGAAGACTGTATCGT...........................................................................................................................................................................2120.502.50--0.50--------------------------------------------------
..........................................................TGAGGTGGAAGACTGTATAA............................................................................................................................................................................2020.502.50--------------------------------------0.50--------------
..........................................................TGAGGTGGAAGACTGTAG..............................................................................................................................................................................1820.502.50-------------------0.50---------------------------------
..........................................................TGAGGTGGAAGACTGTATCTG...........................................................................................................................................................................2120.502.500.50----------------------------------------------------
..........................................................TGAGGTGGAAGACTGTAGCGA...........................................................................................................................................................................2120.502.50--------------0.50--------------------------------------
..........................................................TGAGGTGGAAGACTGTATCGA...........................................................................................................................................................................2120.502.50----------------0.50------------------------------------
..........................................................TGAGGTGGAAGACTGTAGTTA...........................................................................................................................................................................2120.502.50-0.50---------------------------------------------------
..........................................................TGAGGTGGAAGACTGTAGTGT...........................................................................................................................................................................2120.502.50-0.50---------------------------------------------------
......................................................................................................................................................................................................................CCAGTCGCACATCTCAGAC.................1920.500.50---------------------------------------------------0.50-
..........................................................TGAGGTGGAAGACTGTACCGC...........................................................................................................................................................................2120.502.50-----0.50-----------------------------------------------
..........................................................TGAGGTGGAAGACTGTAGTT............................................................................................................................................................................2020.502.50--------------0.50--------------------------------------
..........................................................TGAGGTGGAAGACTGTACTGT...........................................................................................................................................................................2120.502.50-------------------------------0.50---------------------
..........................................................TGAGGTGGAAGACTGTACAGC...........................................................................................................................................................................2120.502.50-0.50---------------------------------------------------
..........................................................TGAGGTGGAAGACTGTAGCTT...........................................................................................................................................................................2120.502.50-0.50---------------------------------------------------
..........................................................TGAGGTGGAAGACTGTAGCTA...........................................................................................................................................................................2120.502.50---0.50-------------------------------------------------
..........................................................TGAGGTGGAAGACTGTAGTGG...........................................................................................................................................................................2120.502.50-------------0.50---------------------------------------
..........................................................TGAGGTGGAAGACTGTAGGGT...........................................................................................................................................................................2120.502.50--------------------------0.50--------------------------
..........................................................TGAGGTGGAAGACTGTAGC.............................................................................................................................................................................1920.502.50--------------------0.50--------------------------------
..........................................................TGAGGTGGAAGACTGTATATA...........................................................................................................................................................................2120.502.50-------------------------0.50---------------------------
..........................................................TGAGGTGGAAGACTGTATCTT...........................................................................................................................................................................2120.502.50-----------------------------------0.50-----------------
..........................................................TGAGGTGGAAGACTGTATCAG...........................................................................................................................................................................2120.502.50--0.50--------------------------------------------------
..........................................................TGAGGTGGAAGACTGTACAG............................................................................................................................................................................2020.502.500.50----------------------------------------------------
..........................................................TGAGGTGGAAGACTGTATGGT...........................................................................................................................................................................2120.502.50---------0.50-------------------------------------------

Antisense strand
TCCAAGTCCTCTAGGCTCAGGACTCTGGGCTTGAGGAGTCCTGAGGGGGTCCCAGGGTTGAGGTGGAAGACTGTAACTGGGAGGGTGGGGCTTCAGACATCGAAGAAGCAGGGAAAGGGGACAAGGGATGATGATGAGGGTGGGCTACCAAGAGTAGGGCTCTGGTCTAAGAAGCTCTTGCCACTCCCCATCTCCTGCAGGAGATCCGCGTTCTCCAGTCGCACATCTCAGACACCTCAGTGGTCGTCAA
..................................................(((..(((((.(((.....))).)))))...........(((((..........))))).......)))...................................................................................................................................
..................................................51..........................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189784GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577739(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334TAX577580(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189786GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577590(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040008(GSM532893)
G727N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040024(GSM532909)
G613N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191580(GSM715690)
103genomic small RNA (size selected RNA from . (breast)		SRR343335SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040038(GSM532923)
G531N. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577453(Rovira)
total RNA. (breast)
.............................................................................................................AGGGAAAGGGGACAAGGGAAG........................................................................................................................ 215.000.00----2.00-------2.00-------------------------------1.00--------
.............................................................................................................AGGGAAAGGGGACAAGGGAAGT....................................................................................................................... 223.000.00----2.00----------1.00-------------------------------------
......................................CTGGGACCCCCTCAGGA................................................................................................................................................................................................... 1722.502.50------------------2.50----------------------------------
................................................................................................................................................................................................................CTGAGATGTGCGACTGGAGAACG................... 2311.001.00-------------------------------------------1.00---------
....................................................CAGGGTTGAGGTGGATCGG................................................................................................................................................................................... 191.000.00----1.00------------------------------------------------
....................................................................................................................................................................................................................CTCCAGTCGCACATCTCAGACACCTCAT.......... 281.000.00--------1.00--------------------------------------------
......................CTCTGGGCTTGAGGAGTGAT................................................................................................................................................................................................................ 201.000.00----------------------------------------------1.00------
...........................................................................................................................................................................................................CGACTGGAGAACGCGGAT............................. 1811.001.00-----------------------------1.00-----------------------
........................................................................................................................................................................................................................GTGTCTGAGATGTGCGACT............... 1920.500.50--------------------------------------------------0.50--
......................................................................................................................................................................................................................GGTGTCTGAGATGTGCGACTGG.............. 2220.500.50-----------------------------0.50-----------------------