ID: uc010sma.1_intron_1_0_chr12_49317636_r
GENE: (3)
chr12:49317586-49318055-


(1)
AGO2.ip 		(10)
B-CELL 		(2)
BRAIN 		(15)
BREAST 		(32)
CELL-LINE 		(9)
CERVIX 		(2)
FIBROBLAST 		(5)
HEART 		(1)
HELA 		(8)
LIVER 		(3)
OTHER 		(2)
RRP40.ip 		(43)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TGTCTTCTTCTTCAAGGTCTGGAGCAGAGTCTTCTCGACATGTGTGTGGGGTGAGTATCTCGGCAGGGGTGGGCCTGGGTACCCCCTTTGCATGGGTAGAGGCTTTCTCGGCCATCCTCACTCCTTAAGCAGGAGAATGTGGAATAAAGGACCCTGCTTCCCACTGGACAGGTCCAGGTCAGTGGGACCTCTGAGGGCATTCAAAGCCTCTGTGCCTCTTGCGCTGTTGCTTTTGTCGGGGGAGTTGAGGCACATGGGGAGATGGACACCTTTGCTGGCCAGCCTGTTTGGTGTTCAGGTGGAAAAATTCGTGTTTTGGGTGTGAAGATTCAGGGGGTTTTGCTGAAGGAGCTTCAGCTGGACTGAGGCTGCTGGCCTACCTCTCCTGCCTCTGGCTGTGACTGACATTCCTTCCCTCAGAGAGAAGCGAAGGGCAATCATTCCTTCTCACTTGGCCTATGGAAAACGGG
........................................................................................................................................................................................................................................................................................................(((.((((....(((.(((...(((....(((..((((((((...(((..((.((((((((.....)))))))).)))))..))))..))))..))).)))..))))))..))))...))).....................................................
.....................................................................................................................................................................................................................................................................................................294...........................................................................................................................420................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037938(GSM510476)
293Red. (cell line)		TAX577738(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR040041(GSM532926)
G612T. (cervix)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040006(GSM532891)
G601N. (cervix)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR038862(GSM458545)
MM472. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACATTCCTTCCCTCAGA.................................................24132.0032.009.00-8.00--6.00-------------2.00-------------1.00-----------------------1.00----------------------------------1.00--1.00--1.00--1.001.00-------------------------------
.................................CTCGACATGTGTGTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................17126.0026.002.007.00-----2.002.001.00-2.00--1.00------------1.00---1.00--1.001.00---1.00---------------------------------1.00-----------1.00--1.001.00--------------------------------------------
................................TCTCGACATGTGTGTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................18125.0025.00-4.00-----2.003.002.00-2.00--2.00-----1.00-1.00---------2.00--1.00-------------------1.00-----1.00----------1.00---------------------------1.00--1.00------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACATTCCTTCCCTCAG..................................................2316.006.00--2.00---------1.00--------------------------1.00-------1.00-----------------1.00--------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................TGTGACTGACATTCCTTCCCTCAGA.................................................2516.006.004.00-2.00-----------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACATTCCTTCCCTCAGAG................................................2515.005.005.00-------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACATTCCTTCCCTCAGAA................................................2515.0032.003.00----------------------1.00-------------1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................TGTGACTGACATTCCTTCCCTCAG..................................................2413.003.00----------------------1.00----------------------------------------------------------1.00--------1.00-------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACTGACATTCCTTCCCTCAGA.................................................2712.002.002.00-------------------------------------------------------------------------------------------------------------------------------------
..........................GAGTCTTCTCGACATGTGTGTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002.00----------------------------------------------------------------------------1.00---1.00-----------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACATTCCTTCCCTCAGTA................................................2512.006.00----------------------------2.00---------------------------------------------------------------------------------------------------------
..................................TCGACATGTGTGTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................1612.002.00-------1.00------------------------------------------------1.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................GTGGAAAAATTCGTGTTTTGGGT.....................................................................................................................................................2312.002.00--------------------2.00-----------------------------------------------------------------------------------------------------------------
..........................................................................................................................CCTTAAGCAGGAGAATGTGGAATA....................................................................................................................................................................................................................................................................................................................................2412.002.00------------------------------------1.00--------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTTCTCACTTGGCCTATGGA.......2512.002.00----------------2.00---------------------------------------------------------------------------------------------------------------------
...............................TTCTCGACATGTGTGTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002.00---------1.00-------------------------------------------1.00--------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TTCAGCTGGACTGAGGCTG...................................................................................................1911.001.00-----------------------------------------------------------1.00--------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACATTCCTTCCCTCAGAAAA..............................................2711.0032.00----------------------------------------------1.00---------------------------------------------------------------------------------------
....................................................................................................................................................................................................................TGCCTCTTGCGCTGTTGAGA..............................................................................................................................................................................................................................................201.000.00------------------------------------------------------------------------------------1.00-------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................GAGCTTCAGCTGGACTGAG.......................................................................................................1911.001.00------------------------------1.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................AAGCCTCTGTGCCTCTTGCGCTGTTG.................................................................................................................................................................................................................................................2611.001.00------------------1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................GCCTCTGGCTGTGACTGACATTCCTTCCCTCCG..................................................331.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................AGCTGGACTGAGGCTGCTGGCCC............................................................................................231.000.00------------------1.00-------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................TTGAGGCACATGGGGAGATGGACACC........................................................................................................................................................................................................2611.001.00---------------------------------------------------------------------------1.00----------------------------------------------------------
.................TCTGGAGCAGAGTCTTCTCGACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00----------------1.00---------------------------------------------------------------------------------------------------------------------
..............AGGTCTGGAGCAGAGCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------1.00-------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................TGTGACTGACATTCCTTCCAAGA...................................................231.000.001.00-------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................CATGGGGAGATGGACGGC........................................................................................................................................................................................................181.000.00-----------------------------------------------------------------------1.00--------------------------------------------------------------
..............................................................GCAGGGGTGGGCCTGGTT......................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00-----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................AAGCCTCTGTGCCTCTTGCGCT.....................................................................................................................................................................................................................................................2211.001.00---------------------------------------------------1.00----------------------------------------------------------------------------------
..............AGGTCTGGAGCAGAGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------------------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................ATTCGTGTTTTGGGTGTGAAGATTCAGGG.......................................................................................................................................2911.001.00--------------------------------------------------------------------------1.00-----------------------------------------------------------
...............................................................CAGGGGTGGGCCTGGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACATTCCTTCCCTCAGAAT...............................................2611.0032.00-------------------1.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................AGCAGGAGAATGTGGAATA....................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------
............................................................................................................................TTAAGCAGGAGAATGTGGAAT.....................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------------------1.00----------------------------------------------
.....................................................................................................................................................................................................................................................TGAGGCACATGGGGAGATGGA............................................................................................................................................................................................................2111.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................CGGGGGAGTTGAGGCACA........................................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------1.00---------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................TTTTGCTGAAGGAGCTTCAGCTGGACTGAG.......................................................................................................3011.001.00-------------------------------------------------1.00------------------------------------------------------------------------------------
...............................................................................................................................AGCAGGAGAATGTGGTTTG....................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------------------------1.00----------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCACTTGGCCTATGGAAAACGGG2611.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------
....................................................................GTGGGCCTGGGTACCCCCCTTT............................................................................................................................................................................................................................................................................................................................................................................................221.000.00------------------------------------------------------------------1.00-------------------------------------------------------------------
................................................................................................................................................................................................................................................................................TGCTGGCCAGCCTGTCGG....................................................................................................................................................................................181.000.00---------------------------------1.00----------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................GGCACATGGGGAGATGGACACCTTTG....................................................................................................................................................................................................2611.001.00----------------------------------------------------1.00---------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................TTCAGCTGGACTGAGGCTGCT.................................................................................................2111.001.00---------------------------------------------------------------1.00----------------------------------------------------------------------
.....TCTTCTTCAAGGTCTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------1.00----------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................GGGGGTTTTGCTGAATGG........................................................................................................................181.000.00--------------------------------------------------1.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................GGTGTTCAGGTGGAAGTG...................................................................................................................................................................181.000.00------------------------------------------------1.00-------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGTGACTGACATTCCTTCCCTCAG..................................................2811.001.00---------1.00----------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGAAGGGCAATCTCA............................181.000.00----------------------------------------------------------------------------------1.00---------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACATTCCTTCCCTCAGAC................................................2511.0032.00-----------------------------------------------------------------------------1.00--------------------------------------------------------
.................................................................................................................................CAGGAGAATGTGGAATAAAG.................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------1.00---------------------------------------------------------------------------------------------------
........................CAGAGTCTTCTCGACATGTGTGTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00------------------------------------------1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................CTGTGACTGACATTCCTTCCC......................................................2111.001.00--------------------------------------------------------------------1.00-----------------------------------------------------------------
....................................................................................................................................................................................AGTGGGACCTCTGAGGGCATTCA...........................................................................................................................................................................................................................................................................2311.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------
.........CTTCAAGGTCTGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50----------------------0.50---------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTTCTCACTTGG...............1740.250.25-------------------------------------------------------------------------------------------------------------------------------------0.25
.....................................................................................................................................................................................................................................................................................................................................................................CTGGACTGAGGCTGCT.................................................................................................1640.250.25----------------------0.25---------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................TCAGCTGGACTGAGG......................................................................................................1580.120.12-----------------------0.12--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................AGCTGGACTGAGGCTG...................................................................................................1680.120.12----------------------------------------0.12---------------------------------------------------------------------------------------------

Antisense strand
TGTCTTCTTCTTCAAGGTCTGGAGCAGAGTCTTCTCGACATGTGTGTGGGGTGAGTATCTCGGCAGGGGTGGGCCTGGGTACCCCCTTTGCATGGGTAGAGGCTTTCTCGGCCATCCTCACTCCTTAAGCAGGAGAATGTGGAATAAAGGACCCTGCTTCCCACTGGACAGGTCCAGGTCAGTGGGACCTCTGAGGGCATTCAAAGCCTCTGTGCCTCTTGCGCTGTTGCTTTTGTCGGGGGAGTTGAGGCACATGGGGAGATGGACACCTTTGCTGGCCAGCCTGTTTGGTGTTCAGGTGGAAAAATTCGTGTTTTGGGTGTGAAGATTCAGGGGGTTTTGCTGAAGGAGCTTCAGCTGGACTGAGGCTGCTGGCCTACCTCTCCTGCCTCTGGCTGTGACTGACATTCCTTCCCTCAGAGAGAAGCGAAGGGCAATCATTCCTTCTCACTTGGCCTATGGAAAACGGG
........................................................................................................................................................................................................................................................................................................(((.((((....(((.(((...(((....(((..((((((((...(((..((.((((((((.....)))))))).)))))..))))..))))..))).)))..))))))..))))...))).....................................................
.....................................................................................................................................................................................................................................................................................................294...........................................................................................................................420................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037938(GSM510476)
293Red. (cell line)		TAX577738(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR040041(GSM532926)
G612T. (cervix)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040027(GSM532912)
G220T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR040018(GSM532903)
G701N. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577741(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040006(GSM532891)
G601N. (cervix)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR038862(GSM458545)
MM472. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040015(GSM532900)
G623T. (cervix)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................CTCGGCCATCCTCACCGGT......................................................................................................................................................................................................................................................................................................................................................... 1924.500.000.50--0.503.00-2.00---2.00--1.50-1.00-----1.00--1.00----0.50-------0.50---1.00-0.500.50---0.50---------------0.50------------------0.50-----------------------0.500.500.500.500.500.50-0.500.50--0.50-0.50--0.500.500.50--0.50--0.50--
..........................................................................................................CTCGGCCATCCTCACCGG.......................................................................................................................................................................................................................................................................................................................................................... 1818.500.00-2.50-1.500.50-1.00---0.50--0.50-0.50-----1.00-0.501.000.50-----1.00-----0.50--1.00-0.50--0.500.50--0.50-----------------0.50---------------0.50-------0.50-------0.50-------------0.50--0.50-----0.50-------0.50---
..........................................................................................................CTCGGCCATCCTCACTGGT......................................................................................................................................................................................................................................................................................................................................................... 196.000.00---2.50-----------------0.50-0.50-----------------0.50--0.50-------------------0.50--------------------------0.50----------------------------------------0.50-
..........................................................................................................CTCGGCCATCCTCACCG........................................................................................................................................................................................................................................................................................................................................................... 174.000.00---0.50--0.50--------0.50----------------------------0.50-----------------0.50------------------------------------0.50-------------------0.50------0.50-------
..........................................................................................................CTCGGCCATCCTCACTGG.......................................................................................................................................................................................................................................................................................................................................................... 184.000.00---1.00--1.00---0.50---------------0.50-----------------------0.50----------------0.50------------------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACGGGT......................................................................................................................................................................................................................................................................................................................................................... 193.500.00----1.50-----1.00---------------------------------------------------------------------------------------------1.00-----------------------------
..........................................................................................................CTCGGCCATCCTCACC............................................................................................................................................................................................................................................................................................................................................................ 163.500.00-----------------------0.50---0.50------------0.50------0.50---------------------0.50--------0.50------------------------------------------------0.50------
..........................................................................................................GTGAGGATGGCCGAG............................................................................................................................................................................................................................................................................................................................................................. 1523.503.50-------------0.500.50---------0.50-------------------------------------0.50------0.50--------0.50--------------------------------------------------0.50----
.........................................................................................................TCTCGGCCATCCTCACGG........................................................................................................................................................................................................................................................................................................................................................... 183.000.00---1.001.00-------1.00-------------------------------------------------------------------------------------------------------------------------
.........................................................................................................TCTCGGCCATCCTCACGGT.......................................................................................................................................................................................................................................................................................................................................................... 192.000.00---1.00---------------------------------------1.00------------------------------------------------------------------------------------------
.......................................................................................................TTTCTCGGCCATCCTTAA............................................................................................................................................................................................................................................................................................................................................................. 181.000.00-----------------1.00--------------------------------------------------------------------------------------------------------------------
......................................................................................................CTTTCTCGGCCATCCTAAA............................................................................................................................................................................................................................................................................................................................................................. 191.000.00-----------------1.00--------------------------------------------------------------------------------------------------------------------
.........................................................................................................TCTCGGCCATCCTCACGGG.......................................................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------------------------------------------------------------------------------------------1.00----------------------------
..........................................................................................................CTCGGCCATCCTCACCGGA......................................................................................................................................................................................................................................................................................................................................................... 191.000.00----0.50-0.50-------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TTTCTCGGCCATCCTTTTT............................................................................................................................................................................................................................................................................................................................................................ 191.000.00------------------------------------------------------------------------------------------------1.00-------------------------------------
......................................................................................................CTTTCTCGGCCATCCTAAG............................................................................................................................................................................................................................................................................................................................................................. 191.000.00--------------------------------------1.00-----------------------------------------------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACTCCTCGG...................................................................................................................................................................................................................................................................................................................................................... 221.000.00----1.00---------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................TTTCTCGGCCATCCTTAG............................................................................................................................................................................................................................................................................................................................................................. 181.000.00--------------------------------------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................CTCGGCCATCCTCACTCGGG........................................................................................................................................................................................................................................................................................................................................................ 201.000.00-----------------------------1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................GTGAAGATTCAGGGGGTTTC................................................................................................................................. 201.000.00------------------------------1.00-------------------------------------------------------------------------------------------------------
.........................................................................................................TCTCGGCCATCCTCACCGT.......................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------------------------------1.00---------------------------------------------------------------------------
.......................................................................................................TTTCTCGGCCATCCTAAA............................................................................................................................................................................................................................................................................................................................................................. 181.000.00--------------------------------------1.00-----------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................AAACCCCCTGAATCTTCA.................................................................................................................................. 1811.001.00-------------------------------------------------------------------------------------------------1.00------------------------------------
.........................................................................................................TCTCGGCCATCCTCACTG........................................................................................................................................................................................................................................................................................................................................................... 181.000.00----------------------------------------------------------------------------------------------1.00---------------------------------------
.................................................................................................................................................................................................................................................................................................................................GTGAAGATTCAGGGGGTC................................................................................................................................... 181.000.00---------------------------1.00----------------------------------------------------------------------------------------------------------
................................................................................................................CATCCTCACTCCTTATTTC................................................................................................................................................................................................................................................................................................................................................... 191.000.00----------------------------------------------------------------------------------------------------------1.00---------------------------
.......................................................................................................TTTCTCGGCCATCCTAATT............................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------1.00--------------------------------------------------------------------------------------------------------------------
.......................................................................................................TTTCTCGGCCATCCTAAAT............................................................................................................................................................................................................................................................................................................................................................ 191.000.00------------------------------------------------------1.00-------------------------------------------------------------------------------
..................................................................GGGTGGGCCTGGGTAAG................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00-------------------------------------------------------------------------------1.00------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACCGAA......................................................................................................................................................................................................................................................................................................................................................... 190.500.00---------------------------------------------------0.50----------------------------------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACTAG.......................................................................................................................................................................................................................................................................................................................................................... 180.500.00------------0.50-------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACTTG.......................................................................................................................................................................................................................................................................................................................................................... 180.500.00---0.50----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACCGGG......................................................................................................................................................................................................................................................................................................................................................... 190.500.00---------------------0.50----------------------------------------------------------------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACCTGT......................................................................................................................................................................................................................................................................................................................................................... 190.500.00-------------------------------------------------------------------------------------------------------------------------0.50------------
..........................................................................................................CTCGGCCATCCTCACCGGC......................................................................................................................................................................................................................................................................................................................................................... 190.500.00-----------------------------0.50--------------------------------------------------------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACTTGT......................................................................................................................................................................................................................................................................................................................................................... 190.500.00------0.50-------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................CTCGGCCATCCTCACGGG.......................................................................................................................................................................................................................................................................................................................................................... 180.500.00---------------------------------------------------------------------------------------------------------------------0.50----------------
..........................................................................................................CTCGGCCATCCTCACTGGG......................................................................................................................................................................................................................................................................................................................................................... 190.500.00----------0.50---------------------------------------------------------------------------------------------------------------------------