ID: uc010shv.1_intron_10_0_chr12_15811520_r.3p
GENE: (3)
chr12:15811470-15811719-


(2)
BRAIN 		(12)
BREAST 		(3)
CELL-LINE 		(11)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
GCCTAAGGATAGAGCAATCCATTTTGAAATTTGTATCTTCTCAGTTTGTTACAGTCAGACTATGAGATGTAGCACGGTAACTAGGTAGCATGTCTGATGAGATCTTCAAACTTTACAGACATAAATGTGGTTTTTGTTTTTCCATTTAATAAATTTCCTTGGATTTTGCTCTGATCCTCTCCTCTCGCTTATTTCATTAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTT
...........................................................((((.....)))).((((.(((((.((...(((((((..(((.........)))..)))))))..)).))))).))))...((((...............)))).......................................................................................
.........................................................58............................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR040024(GSM532909)
G613N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040018(GSM532903)
G701N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR029130(GSM416759)
DLD2. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040030(GSM532915)
G013N. (cervix)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM532875(GSM532875)
G547N. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		GSE20417(GSM514985)
Colon and lung cancer pool. 		TAX577739(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)
..............................................................TGAGATGTAGCACGGTAGCT........................................................................................................................................................................2021.000.005.003.00--2.00-1.00---1.00--1.00---------1.001.00---------1.00----1.001.001.001.001.00
..............................................................TGAGATGTAGCACGGTAGCTC.......................................................................................................................................................................219.000.002.00-------2.001.00-1.00--1.00---------------1.00------1.00------
..............................................................TGAGATGTAGCACGGTTGCT........................................................................................................................................................................205.000.002.001.00--1.00-1.00-------------------------------------
..............................................................TGAGATGTAGCACGGTAG..........................................................................................................................................................................183.000.002.00------1.00------------------------------------
..............................................................TGAGATGTAGCACGGTTGC.........................................................................................................................................................................193.000.00-1.00---------1.00-1.00------------------------------
............................................................................................................................................................................................................TGTTTTAACGCTGCGGGCA...........................1912.002.00--2.00-----------------------------------------
...............................................................GAGATGTAGCACGGTAACTAGGTAGC.................................................................................................................................................................2612.002.00---------------2.00----------------------------
..............................................................TGAGATGTAGCACGGTAGC.........................................................................................................................................................................192.000.001.001.00------------------------------------------
.........................................................................................................................................................................................................GGGTGTTTTAACGCTGCG...............................1812.002.00------------2.00-------------------------------
..............................................................TGAGATGTAGCACGGTTGAT........................................................................................................................................................................202.000.00-1.00----1.00-------------------------------------
...................................................................................................................................................................................................................ACGCTGCGGGCAAAACCTCCACCTCCTG...........2812.002.00---2.00----------------------------------------
..............................................................TGAGATGTAGCACGGTAGCTA.......................................................................................................................................................................212.000.002.00-------------------------------------------
..............................................................TGAGATGTAGCACGGTTTT.........................................................................................................................................................................191.000.00-------------------1.00------------------------
.................................................................................................................................................TTAATAAATTTCCTTCCGG......................................................................................191.000.00-----------------------------1.00--------------
..............................................................TGAGATGTAGCACGGTTGT.........................................................................................................................................................................191.000.001.00-------------------------------------------
..............................................................TGAGATGTAGCACGGTAGATC.......................................................................................................................................................................211.000.00--------------------------------------1.00-----
..............................................................TGAGATGTAGCACGGTAGGT........................................................................................................................................................................201.000.00-------1.00------------------------------------
..............................................................TGAGATGTAGCACGGTTGTT........................................................................................................................................................................201.000.00----------------------------1.00---------------
.........................................................................ACGGTAACTAGGTAGCATGTCT...........................................................................................................................................................2211.001.00--1.00-----------------------------------------
............................................................................GTAACTAGGTAGCATGTCT...........................................................................................................................................................1911.001.00--1.00-----------------------------------------
.......GATAGAGCAATCCATTTT.................................................................................................................................................................................................................................1811.001.00-------------------------1.00------------------
..............................................................TGAGATGTAGCACGGTAGTTC.......................................................................................................................................................................211.000.00---------1.00----------------------------------
..............................................................TGAGATGTAGCACGGTAGCA........................................................................................................................................................................201.000.001.00-------------------------------------------
..............................................................TGAGATGTAGCACGGTAA..........................................................................................................................................................................1811.001.00-1.00------------------------------------------
..............................................................TGAGATGTAGCACGGTAGCTT.......................................................................................................................................................................211.000.00---------------------------1.00----------------
..............................................................TGAGATGTAGCACGGTTGAA........................................................................................................................................................................201.000.00-1.00------------------------------------------
...........................................................................................................................AATGTGGTTTTTGTTTTGA............................................................................................................191.000.00---1.00----------------------------------------
..............................................................TGAGATGTAGCACGGTTGCC........................................................................................................................................................................201.000.001.00-------------------------------------------
.......................................................................................................CTTCAAACTTTACAGTCAG................................................................................................................................191.000.00-------------------------------1.00------------
...............................................................................................................................................................................................TTTCATTAGAGGGTGTTT.........................................1811.001.00----------1.00---------------------------------
..............................................................TGAGATGTAGCACGGTACTT........................................................................................................................................................................201.000.00-1.00------------------------------------------
........................................................AGACTATGAGATGTAGCA................................................................................................................................................................................1811.001.00--1.00-----------------------------------------
..............................................................TGAGATGTAGCACGGTAT..........................................................................................................................................................................181.000.001.00-------------------------------------------
..............................................................TGAGATGTAGCACGGATCC.........................................................................................................................................................................191.000.00----1.00---------------------------------------
...............................................................GAGATGTAGCACGGTAGCT........................................................................................................................................................................191.000.00----------------1.00---------------------------
..............................................................TGAGATGTAGCACGGTCGA.........................................................................................................................................................................191.000.00--------------1.00-----------------------------
...................................................................................................................................................................................................ATTAGAGGGTGTTTTGGG.....................................181.000.00----------------------1.00---------------------
................................................TTACAGTCAGACTATC..........................................................................................................................................................................................161.000.00-----------------1.00--------------------------
..............................................................TGAGATGTAGCACGGCAGC.........................................................................................................................................................................191.000.00-1.00------------------------------------------
..............................................................TGAGATGTAGCACGGTGGCT........................................................................................................................................................................201.000.00---------------------------------1.00----------
...............................................................................................................................................................................................................................AAACCTCCACCTCCTGATGAATTTCTT2711.001.00--------------------------------1.00-----------

Antisense strand
GCCTAAGGATAGAGCAATCCATTTTGAAATTTGTATCTTCTCAGTTTGTTACAGTCAGACTATGAGATGTAGCACGGTAACTAGGTAGCATGTCTGATGAGATCTTCAAACTTTACAGACATAAATGTGGTTTTTGTTTTTCCATTTAATAAATTTCCTTGGATTTTGCTCTGATCCTCTCCTCTCGCTTATTTCATTAGAGGGTGTTTTAACGCTGCGGGCAAAACCTCCACCTCCTGATGAATTTCTT
...........................................................((((.....)))).((((.(((((.((...(((((((..(((.........)))..)))))))..)).))))).))))...((((...............)))).......................................................................................
.........................................................58............................................................................................................168................................................................................
SizePerfect hitTotal NormPerfect NormSRR040024(GSM532909)
G613N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040018(GSM532903)
G701N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR029130(GSM416759)
DLD2. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040030(GSM532915)
G013N. (cervix)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM532875(GSM532875)
G547N. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		GSE20417(GSM514985)
Colon and lung cancer pool. 		TAX577739(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR553574(SRX182780)
source: Heart. (Heart)		TAX577743(Rovira)
total RNA. (breast)
............................................................................................................................................................................................................................GCAAAACCTCCACCTTTCT........... 193.000.00-----3.00--------------------------------------
............................................................................GTAACTAGGTAGCATGGC............................................................................................................................................................ 182.000.00--------------------------1.00---------1.00-------
.............................................................................................................................................................................................................................CAAAACCTCCACCTCCTGAGTGT...... 231.000.00-----------------------------------1.00--------
....................................................................CATGCTACCTAGTTACCGTGCTAC.............................................................................................................................................................. 2411.001.00--------------------1.00-----------------------
..............................................................................................................................................................................................................................AAAACCTCCACCTCCTGTT......... 191.000.00------------------1.00-------------------------
.............................................................................................................................................................................................................................CAAAACCTCCACCTCGAA........... 181.000.00---------------------1.00----------------------
.............................................................................................................................................................................................................................CAAAACCTCCACCTCCTAG.......... 191.000.00---1.00----------------------------------------