ID: uc010scx.1_intron_0_0_chr12_74366_f.3p
GENE: DKFZp434K1323(1)
chr12:78586-78835+


(3)
AGO2.ip
(1)
AGO3.ip
(5)
B-CELL
(2)
BRAIN
(8)
BREAST
(16)
CELL-LINE
(4)
CERVIX
(3)
HEART
(2)
HELA
(5)
LIVER
(3)
OTHER
(1)
RRP40.ip
(25)
SKIN
(1)
TESTES
(3)
UTERUS

Sense strand
CTCAGCAGGCATCAGCAGAGTCCCATCTATGCGCTCCTGGCCTCTCAGCAAATGCTCTGTCCCCTACTCCCCTATCTGTGCAGGCTGAAGCTATGTGCATAGTTGGGATGAGGGCTGTGTTGTCTCAACACCACGCTGCCCTGTGGTGGGGGCGTGCCGGTGGTCGTGGGTGGCTCTGATGCTCCGGCTCCGACCCACAGGCACCATGACTCCTGTGAGGATGCAGCACTCCCTGGCAGGTCAGACCTAT
.....................................................................................................((((((((((........)))))))))).((((((((((((......)))))).))..))))..((((((((..(((......)))..)).))))))....................................................
...............................................................................................96......................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR189786SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR343336SRR040008(GSM532893)
G727N. (cervix)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................ATGCGCTCCTGGCCTTA.............................................................................................................................................................................................................1774.000.71---3.00--------------------1.00-------------------------------------------------------
....................................................................................................AGTTGGGATGAGGGCTGTGTTGTCC.............................................................................................................................253.000.003.00-------------------------------------------------------------------------------
............................................................................................................................................................................................................................ATGCAGCACTCCCTGGCAGGCCAG......243.000.003.00-------------------------------------------------------------------------------
...................................................................................................TAGTTGGGATGAGGGCTGTGTTGTCCC............................................................................................................................2763.000.173.00-------------------------------------------------------------------------------
...................................................................................................................................................................................TGCTCCGGCTCCGACCCACAGA.................................................2223.000.50--------------1.001.00-----1.00----------------------------------------------------------
.........................................................................................................................................................................................................................AGGATGCAGCACTCCCTGGCAGGCC........2563.000.171.002.00------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AGGATGCAGCACTCCCTGGCAGGTCAGACCC..3162.000.171.001.00------------------------------------------------------------------------------
.................................................................................................................................................GTGGGGGCGTGCCGGC.........................................................................................1652.000.40------2.00-------------------------------------------------------------------------
.........................................................................................................................................................................................................................AGGATGCAGCACTCCCTGGCAGGC.........2462.000.172.00-------------------------------------------------------------------------------
....................................................................................................AGTTGGGATGAGGGCTGTGTTGC...............................................................................................................................232.000.002.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGAGGATGCAGCACTCCCTGGCAGGC.........262.000.002.00-------------------------------------------------------------------------------
...............................................................................................TGCATAGTTGGGATGAGGGCTGTAG..................................................................................................................................252.000.00--2.00-----------------------------------------------------------------------------
.......................................................................................................................................................................................................................TGAGGATGCAGCACTCCCTGGCAGGCCAG......292.000.001.001.00------------------------------------------------------------------------------
....................................................................................................AGTTGGGATGAGGGCTGTGTTGCCTC............................................................................................................................262.000.002.00-------------------------------------------------------------------------------
.................................................................................................................................................GTGGGGGCGTGCCGGCG........................................................................................1751.000.40------------------------------1.00-------------------------------------------------
....................................................................................................AGTTGGGATGAGGGCTGTGTCGTC..............................................................................................................................241.000.00--------1.00-----------------------------------------------------------------------
...............................................................................................TGCATAGTTGGGATGAGGGCTGTA...................................................................................................................................241.000.00--1.00-----------------------------------------------------------------------------
..................................................................................................................................................................................ATGCTCCGGCTCCGACCGAC....................................................201.000.00-----1.00--------------------------------------------------------------------------
.........................................................................................................................................................................GTGGCTCTGATGCTCCGGC..............................................................1921.001.00-------------------------------0.50------0.50-----------------------------------------
............................................................................................................................................................................................................................ATGCAGCACTCCCTGGCAGGTCAGACCC..281.000.001.00-------------------------------------------------------------------------------
...................................................................................................................................................................................TGCTCCGGCTCCGACCCACAGAA................................................2321.000.50--------------------------1.00-----------------------------------------------------
..................................................................................................................................................................................ATGCTCCGGCTCCGACCCA.....................................................1921.001.00-----------0.50-------------------------0.50------------------------------------------
...................................................................................................TAGTTGGGATGAGGGCTGTGTTGCC..............................................................................................................................251.000.001.00-------------------------------------------------------------------------------
....................................................................................................AGTTGGGATGAGGGCTGTGTTGTCCC............................................................................................................................261.000.00-1.00------------------------------------------------------------------------------
................AGAGTCCCATCTATGCGCTCCTGGCCTCTCAGA.........................................................................................................................................................................................................331.000.001.00-------------------------------------------------------------------------------
...................................................................................................TAGTTGGGATGAGGGCTGTGTTGCCC.............................................................................................................................261.000.001.00-------------------------------------------------------------------------------
............................................................................................................................................................................................................................ATGCAGCACTCCCTGGCAGGTCAGACCCATG311.000.001.00-------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGTGAGGATGCAGCACTCCCTGGCAGA..........271.000.00----------1.00---------------------------------------------------------------------
........................................................................................................GGGATGAGGGCTGTGTAC................................................................................................................................181.000.00-----------------------1.00--------------------------------------------------------
......................................................................................................TTGGGATGAGGGCTGTGTTGCCTC............................................................................................................................241.000.00-1.00------------------------------------------------------------------------------
...................................................................................................................................................................................TGCTCCGGCTCCGACTCAC....................................................191.000.00-----1.00--------------------------------------------------------------------------
..................................................................................................................................................................GTCGTGGGTGGCTCTGATGCTCTG................................................................241.000.00----------------------------1.00---------------------------------------------------
.........................................................................................................................................................................................................................AGGATGCAGCACTCCCTGGCAGGCCAG......2761.000.171.00-------------------------------------------------------------------------------
.........................................................................ATCTGTGCAGGCTGAAGCTACG...........................................................................................................................................................2261.000.171.00-------------------------------------------------------------------------------
..................................................................................................................................................................................ATGCTCCGGCTCCGACCCACATCT................................................241.000.00--------1.00-----------------------------------------------------------------------
..............................................................................................................................................................GGTGGTCGTGGGTGGTGTG.........................................................................191.000.00-------1.00------------------------------------------------------------------------
...............................................................................................TGCATAGTTGGGATGAGGGCTGTGCTG................................................................................................................................271.000.00-1.00------------------------------------------------------------------------------
..............................................................................................................................................................GGTGGTCGTGGGTGGAGTC.........................................................................191.000.00-------1.00------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGTGAGGATGCAGCACTCCCTGGCAGGCCAG......311.000.00-1.00------------------------------------------------------------------------------
............................ATGCGCTCCTGGCCTTAAC...........................................................................................................................................................................................................1971.000.71-------------------------1.00------------------------------------------------------
.......................................................................................................................................................................................................................TGAGGATGCAGCACTCCCTGGCAGGCC........271.000.00-1.00------------------------------------------------------------------------------
........................................................................................................GGGATGAGGGCTGTGCCC................................................................................................................................181.000.00-----------------1.00--------------------------------------------------------------
..............................................................................................................................................................................................................TGACTCCTGTGAGGACGG..........................181.000.00-------------------1.00------------------------------------------------------------
..................AGTCCCATCTATGCGCTCCTGGCCCAG.............................................................................................................................................................................................................271.000.00-1.00------------------------------------------------------------------------------
...............................................................................................TGCATAGTTGGGATGAGGGCTGTAA..................................................................................................................................251.000.00--1.00-----------------------------------------------------------------------------
....................................................................................................................................................................................................................CTGTGAGGATGCAGCGTTC...................191.000.00------------------1.00-------------------------------------------------------------
...................................................................................................................................................................TCGTGGGTGGCTCTGTGG.....................................................................181.000.00--------------------1.00-----------------------------------------------------------
.......................................................................................................................................................................GGGTGGCTCTGATGCTCCGGCTCCGCC........................................................271.000.00---------------------------1.00----------------------------------------------------
.............................................................................................TGTGCATAGTTGGGATGAGGGCCGCG...................................................................................................................................261.000.001.00-------------------------------------------------------------------------------
............................................................................................ATGTGCATAGTTGGGATGAGGGCTGC....................................................................................................................................261.000.00-1.00------------------------------------------------------------------------------
..................................................................................................................................................................................ATGCTCCGGCTCCGACCCACAGT.................................................231.000.00---------1.00----------------------------------------------------------------------
...................................................................................................TAGTTGGGATGAGGGCTGTGTTGCCTC............................................................................................................................271.000.001.00-------------------------------------------------------------------------------
...................................................................................................................................................................................TGCTCCGGCTCCGACCCACAGTTG...............................................2421.000.50----------------1.00---------------------------------------------------------------
.............AGCAGAGTCCCATCTATGTGG........................................................................................................................................................................................................................211.000.00------------1.00-------------------------------------------------------------------
.................................................................................................CATAGTTGGGATGAGGGCAGT....................................................................................................................................211.000.00----------------------1.00---------------------------------------------------------
............................ATGCGCTCCTGGCCT...............................................................................................................................................................................................................1570.710.71-----0.14---------------------------------0.43-----------------------------------0.14----
...................................................................................................................................................................TCGTGGGTGGCTCTGATGCTCCGGC..............................................................2520.500.50--------------------------------0.50-----------------------------------------------
...................................................................................................................................................................................TGCTCCGGCTCCGACCCACAG..................................................2120.500.50-----------------------------------0.50--------------------------------------------
................................................................................................................................................................................TGATGCTCCGGCTCCGACCCA.....................................................2120.500.50---------0.50----------------------------------------------------------------------
......................................................................................................................................................................................................AGGCACCATGACTCCTGTGA................................2060.500.50---------0.17-------------------------------------0.17---0.17----------------------------
...........................................................................................................................................................GCCGGTGGTCGTGGGTGGC............................................................................1940.500.50----------------------------------0.50---------------------------------------------
..........................................................................................................................................CCCTGTGGTGGGGGCGTGCCGG..........................................................................................2240.500.50----0.25-----------------------------------------0.25---------------------------------
...............................................................................................................................................................GTGGTCGTGGGTGGCTCTGATGC....................................................................2320.500.50---------------------------------0.50----------------------------------------------
................................................................................................GCATAGTTGGGATGAGGG........................................................................................................................................1870.430.43--------------------------------------------0.29--------------------------------0.14--
.................................................................................................................................................GTGGGGGCGTGCCGG..........................................................................................1550.400.40---0.40----------------------------------------------------------------------------
............................................................................TGTGCAGGCTGAAGCTA.............................................................................................................................................................1760.330.33----------------------------------------0.33---------------------------------------
.............................................................................................................................................................................................................ATGACTCCTGTGAGGATG...........................1860.330.33-------------------------------------------------0.17---------------------0.17--------
..............................................................................................GTGCATAGTTGGGATGAG..........................................................................................................................................1870.290.29------------------------------------------------------------------------0.14-0.14-----
...........................................................................................................................................................GCCGGTGGTCGTGGGTG..............................................................................1740.250.25---------------------------------------------0.25----------------------------------
...............................................................................................................................................................................................................................CAGCACTCCCTGGCAGGTCAG......2160.170.17------------0.17-------------------------------------------------------------------
..............................................................................................................................................................................................................................GCAGCACTCCCTGGCAGGT.........1960.170.17---------------------------------------------------------0.17----------------------
.........................................................................ATCTGTGCAGGCTGAAGCTA.............................................................................................................................................................2060.170.17--------------------------------------------------------------0.17-----------------
................................................................................................................................................................................................................ACTCCTGTGAGGATGCAGCACTC...................2360.170.17---------------------------------------------------------------------0.17----------
..............................................................................................................................................................GGTGGTCGTGGGTGGC............................................................................1660.170.17------------------------------------------0.17-------------------------------------
........................................................................................................................................................................................................................GAGGATGCAGCACTCCCTGGCAGG..........2460.170.17-------------------------------------------------------------------0.17------------
..................................................................................................ATAGTTGGGATGAGGGCTG.....................................................................................................................................1960.170.17---------------------------------0.17----------------------------------------------
..............................................................CCTACTCCCCTATCTGTGCAGGCTGA..................................................................................................................................................................2660.170.17-----------------------------------------0.17--------------------------------------
.........................................................................ATCTGTGCAGGCTGAAGCTATGTG.........................................................................................................................................................2460.170.17------------------------------------------------------------0.17-------------------
.............................................................CCCTACTCCCCTATCTGT...........................................................................................................................................................................1860.170.17----------------------------------------------------------------0.17---------------
...AGCAGGCATCAGCAGAGTCCCATCT..............................................................................................................................................................................................................................2560.170.17------------------------------------0.17-------------------------------------------
......................................................CTCTGTCCCCTACTCCCCTATCTGTGCAGGC.....................................................................................................................................................................3160.170.17------------------------------------------------0.17-------------------------------
...............................................................................................TGCATAGTTGGGATGAGGGC.......................................................................................................................................2060.170.17------------------------------------------0.17-------------------------------------
....................................................................................................................................................................................................................CTGTGAGGATGCAGCAC.....................1760.170.17-------------------------------------------------------0.17------------------------
........................................................................................................GGGATGAGGGCTGTGTTGT...............................................................................................................................1960.170.17----------------------------------------------------0.17---------------------------
.........................................................................................................................................................................................................................AGGATGCAGCACTCCCTGGCAGGT.........2460.170.17--------------------------------------------------0.17-----------------------------
....................................................................................CTGAAGCTATGTGCATAGTTGGGATGAGGGC.......................................................................................................................................3160.170.17-------------------------------0.17------------------------------------------------
.......................CATCTATGCGCTCCTGGCCT...............................................................................................................................................................................................................2060.170.17----------------------------------------------------------------------0.17---------
..........................................................................TCTGTGCAGGCTGAAGCTATG...........................................................................................................................................................2160.170.17--------------------------------------------------------0.17-----------------------
................................................................TACTCCCCTATCTGTGCAGGCTGAAGC...............................................................................................................................................................2760.170.17----------0.17---------------------------------------------------------------------
..............................................................................................GTGCATAGTTGGGATGAGGGCTG.....................................................................................................................................2360.170.17-------------------------------0.17------------------------------------------------
...............................................................................GCAGGCTGAAGCTATGTGCA.......................................................................................................................................................2060.170.17------------------------------------------------------0.17-------------------------
..............................................................................................................................................................................................................TGACTCCTGTGAGGATGCA.........................1960.170.17-------------------------------------------0.17------------------------------------
...................................................................................................TAGTTGGGATGAGGGCTGT....................................................................................................................................1960.170.17-----------------------------------------0.17--------------------------------------
.......GGCATCAGCAGAGTCCCATCTATGCG.........................................................................................................................................................................................................................2660.170.17---------------------------------------------------------------0.17----------------
.......................................................................CTATCTGTGCAGGCTGAAGCTATGT..........................................................................................................................................................2560.170.17--------------------------------0.17-----------------------------------------------
......................................................................................................................................................................................................AGGCACCATGACTCCTGTGAGGATGCA.........................2760.170.17-----------------------------------------------------------------0.17--------------
.......................................................................CTATCTGTGCAGGCTGAAG................................................................................................................................................................1960.170.17------------------------------------------------------------------0.17-------------
............................................................................................................................................................................................................CATGACTCCTGTGAGGATGCAGCA......................2460.170.17--------------------------------------------------------------------0.17-----------
.....................................................................................................................................................................................................................TGTGAGGATGCAGCACTCCCTGGCAGGT.........2860.170.17----------0.17---------------------------------------------------------------------
................................................................................................GCATAGTTGGGATGAGGGC.......................................................................................................................................1960.170.17------------------------------------0.17-------------------------------------------
.........................................................................................GCTATGTGCATAGTTGGGATGAGGGCTGT....................................................................................................................................2960.170.17--------------------------------0.17-----------------------------------------------
...................................................................................................TAGTTGGGATGAGGGCTG.....................................................................................................................................1860.170.17-------------------------------------------0.17------------------------------------
...............................................................................................................................................................................................................GACTCCTGTGAGGATGCAGC.......................2060.170.17-----------------------------------------------------0.17--------------------------
..............................................................................................GTGCATAGTTGGGATGAGGGC.......................................................................................................................................2160.170.17-----------------------------------------------------------0.17--------------------
........................................................................................................................................................................................................................GAGGATGCAGCACTCCCTGGCAGGT.........2560.170.17-------------0.17------------------------------------------------------------------
......................................................................................................................................................................................................AGGCACCATGACTCCTGTGAGGATGCAGCA......................3060.170.17----------------------------------------------------------0.17---------------------
.....................................................................................................GTTGGGATGAGGGCTGTGTTGTC..............................................................................................................................2360.170.17-------------------------------------------------------------0.17------------------
.........................................................................................................................................................................................................................AGGATGCAGCACTCCCTGGCAGG..........2360.170.170.17-------------------------------------------------------------------------------
.........................................................................................................................................................................................................................AGGATGCAGCACTCCCTGGCAGGTCAGACC...3060.170.170.17-------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGTGAGGATGCAGCACTCCCTGGCAGGTC........2960.170.17------------------------------------0.17-------------------------------------------
...................................................................................................TAGTTGGGATGAGGGCTGTGTTGTC..............................................................................................................................2560.170.17-0.17------------------------------------------------------------------------------
...........................................................................................TATGTGCATAGTTGGGATGAGGGCTGT....................................................................................................................................2760.170.17----------0.17---------------------------------------------------------------------
............................................................................................ATGTGCATAGTTGGGATGAG..........................................................................................................................................2070.140.14----------------------------------------------------------------------------0.14---
.......................................................................................................................................................................................................................................CCTGGCAGGTCAGACCTAT1970.140.14-------------------------------------------------------------------------0.14------
..............................................................................................GTGCATAGTTGGGATGAGGG........................................................................................................................................2070.140.14------------0.14-------------------------------------------------------------------
.........................................................................................................................................................................................................CACCATGACTCCTGTG.................................1680.120.12------------------------------------------------------------------------------0.12-
............................................................................................................................................................................................................CATGACTCCTGTGAGG..............................1680.120.12-------------------------------------------------------------------------------0.12

Antisense strand
CTCAGCAGGCATCAGCAGAGTCCCATCTATGCGCTCCTGGCCTCTCAGCAAATGCTCTGTCCCCTACTCCCCTATCTGTGCAGGCTGAAGCTATGTGCATAGTTGGGATGAGGGCTGTGTTGTCTCAACACCACGCTGCCCTGTGGTGGGGGCGTGCCGGTGGTCGTGGGTGGCTCTGATGCTCCGGCTCCGACCCACAGGCACCATGACTCCTGTGAGGATGCAGCACTCCCTGGCAGGTCAGACCTAT
.....................................................................................................((((((((((........)))))))))).((((((((((((......)))))).))..))))..((((((((..(((......)))..)).))))))....................................................
...............................................................................................96......................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR189786SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553576(SRX182782)
source: Testis. (testes)
TAX577579(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037937(GSM510475)
293cand2. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR343336SRR040008(GSM532893)
G727N. (cervix)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................AATGCTCTGTCCCCTACTCCCCTATCTGTGG......................................................................................................................................................................... 312.000.00----2.00---------------------------------------------------------------------------
.............................................................CCCTACTCCCCTATCTG............................................................................................................................................................................ 171.000.00-----------------------------1.00--------------------------------------------------
....................................................................................................................................................................................GCTCCGGCTCCGACCTGC.................................................... 181.000.00-----------1.00--------------------------------------------------------------------
..........................................................................................................................................CCCTGTGGTGGGGGCGGTG............................................................................................. 191.000.00-------------1.00------------------------------------------------------------------