ID: uc010rxk.1_intron_10_0_chr11_117252585_f.3p
GENE: CEP164(11)
chr11:117253312-117253561+


(1)
AGO1.ip
(8)
B-CELL
(2)
BRAIN
(6)
BREAST
(29)
CELL-LINE
(1)
FIBROBLAST
(5)
LIVER
(1)
OTHER
(1)
RRP40.ip
(8)
SKIN
(2)
UTERUS

Sense strand
AGGCAGGAGTCTCTAGTCTTTGATGCAAATAATTCAGGGAGAGGAAGGGCGGGGAGAGGGAGGTCTAAGACCCGAGGTAGGGAAATTGTTGGGCTGTCTCTCTTGTCTCTGTCATAGCTCTTTGACCCCAAATGGCGTACATCTTAAGCCTCTTGCTTTCTTACTGGCTTTAACACAGTTGTTTCCTTACTGCTATCAAGGGAGCAGGCCCCAAGCCCACCTGCTGCCTGTGAGAAGGGCAAGGAGCAGC
.............................................................((((...))))...(((((((((((..(((((((........((((...((((........)))).......)))).........))))....(((........))).......)))..)))))))))))...........................................................
.............................................................62........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR037938(GSM510476)
293Red. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038857(GSM458540)
D20. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR038859(GSM458542)
MM386. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
..................................................................AAGACCCGAGGTAGGGCTTT....................................................................................................................................................................2026.000.007.001.001.004.001.002.00-1.00-1.00-1.00----1.00---1.001.001.00-----1.00-1.00----1.00--------------------------
...................................................................AGACCCGAGGTAGGGATTT....................................................................................................................................................................1917.000.00-3.001.00---1.001.001.00-2.00-1.00-----1.00----1.001.00--------1.001.00-1.00-1.00-----------------------
...................................................................AGACCCGAGGTAGGGCTTA....................................................................................................................................................................1948.251.25-1.000.50-2.00--0.500.50-0.25---0.500.250.50--0.25-0.25------------------0.250.250.50--0.50------0.25---------
...................................................................AGACCCGAGGTAGGGCCTT....................................................................................................................................................................1943.751.25--0.50-0.25-0.750.250.25-----0.250.50---0.25---------------------------0.25------0.250.25------
...................................................................AGACCCGAGGTAGGGCGTT....................................................................................................................................................................1943.251.25--0.750.250.250.500.25-0.75-------------------------------------0.25-0.25-------------
...................................................................AGACCCGAGGTAGGGATT.....................................................................................................................................................................183.000.00-1.00-------1.00-------1.00--------------------------------------------
...................................................................AGACCCGAGGTAGGGTTTT....................................................................................................................................................................1943.001.250.25-0.25---0.25-------0.750.25-0.25----------------------0.50-0.25---0.25---------------
...................................................................AGACCCGAGGTAGGGCTTC....................................................................................................................................................................1942.001.25--0.250.25--0.25------------0.50---------------------0.25-----------0.25-------0.25
...................................................................AGACCCGAGGTAGGGGTTT....................................................................................................................................................................1942.001.25-0.25----0.25----------0.250.500.25-------------------------------0.25-------0.25--
...................................................................AGACCCGAGGTAGGGCTCT....................................................................................................................................................................1941.251.25--0.25---------0.25-0.25-------0.25------------------0.25--------------------
...................................................................AGACCCGAGGTAGGG........................................................................................................................................................................1541.251.25-------------------------------------------0.75------0.25---------0.25-
...................................................................AGACCCGAGGTAGGGATTGG...................................................................................................................................................................201.000.00-----1.00--------------------------------------------------------
...................................................................AGACCCGAGGTAGGGAT......................................................................................................................................................................171.000.00-----------------------------1.00--------------------------------
...................................................................AGACCCGAGGTAGGGCATT....................................................................................................................................................................1941.001.25----0.25-------0.25--0.25----------------------------------------0.25-----
..................................................................AAGACCCGAGGTAGGGATTT....................................................................................................................................................................201.000.001.00-------------------------------------------------------------
...................................................................AGACCCGAGGTAGGGATCT....................................................................................................................................................................191.000.00-------------------------------------1.00------------------------
...................................................................AGACCCGAGGTAGGGCTA.....................................................................................................................................................................1841.001.25------------0.25-------0.25-----------------------0.50-----------------
...............................................................................................................................................................................CAGTTGTTTCCTTACTGCTATCA....................................................2311.001.00--------------------------------1.00-----------------------------
...................................................................AGACCCGAGGTAGGGCTGT....................................................................................................................................................................1941.001.25--0.50------------0.25------------------------------------------0.25---
.......................................................................................................................................................................................................................CCCACCTGCTGCCTGTTTTA...............201.000.00-------------------------------1.00------------------------------
.......................................................................................................................................CGTACATCTTAAGCCTCTTA...............................................................................................201.000.00-----------1.00--------------------------------------------------
...........................................GAAGGGCGGGGAGAGGGGCC...........................................................................................................................................................................................201.000.00---------------------------------------1.00----------------------
...................................................................AGACCCGAGGTAGGGCTTG....................................................................................................................................................................1940.501.25-0.25----0.25-------------------------------------------------------
...................................................................AGACCCGAGGTAGGGTTT.....................................................................................................................................................................1840.501.25------0.25------------------------------------------0.25------------
...................................................................AGACCCGAGGTAGGGGGTT....................................................................................................................................................................1940.251.25------------0.25-------------------------------------------------
...................................................................AGACCCGAGGTAGGGCCT.....................................................................................................................................................................1840.251.25---------------0.25----------------------------------------------
...................................................................AGACCCGAGGTAGGGCTAT....................................................................................................................................................................1940.251.25---------------------------------------------------------0.25----
...................................................................AGACCCGAGGTAGGGGC......................................................................................................................................................................1740.251.25---------0.25----------------------------------------------------

Antisense strand
AGGCAGGAGTCTCTAGTCTTTGATGCAAATAATTCAGGGAGAGGAAGGGCGGGGAGAGGGAGGTCTAAGACCCGAGGTAGGGAAATTGTTGGGCTGTCTCTCTTGTCTCTGTCATAGCTCTTTGACCCCAAATGGCGTACATCTTAAGCCTCTTGCTTTCTTACTGGCTTTAACACAGTTGTTTCCTTACTGCTATCAAGGGAGCAGGCCCCAAGCCCACCTGCTGCCTGTGAGAAGGGCAAGGAGCAGC
.............................................................((((...))))...(((((((((((..(((((((........((((...((((........)))).......)))).........))))....(((........))).......)))..)))))))))))...........................................................
.............................................................62........................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR037938(GSM510476)
293Red. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR038857(GSM458540)
D20. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR191567(GSM715677)
46genomic small RNA (size selected RNA from t. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR189782SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577579(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR038859(GSM458542)
MM386. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038853(GSM458536)
MELB. (cell line)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
...............................................................................................GTCTCTCTTGTCTCTGTTTTG...................................................................................................................................... 211.000.00-------------1.00------------------------------------------------
...................................................................................................................................................................................TGTTTCCTTACTGCTATTTT................................................... 201.000.00-1.00------------------------------------------------------------
....................................GGGAGAGGAAGGGCGCG..................................................................................................................................................................................................... 171.000.00--------------------------1.00-----------------------------------
...................................................................................................................................................................................................TCAAGGGAGCAGGCCCCCTC................................... 201.000.00-------------1.00------------------------------------------------
......................................................................................................TTGTCTCTGTCATAGCTGAC................................................................................................................................ 201.000.00-------------------------1.00------------------------------------
...........................................GAAGGGCGGGGAGAGTTT............................................................................................................................................................................................. 181.000.00---------------------------1.00----------------------------------