ID: uc010rsl.1_intron_3_0_chr11_76858997_f.5p
GENE: (4)
chr11:76858947-76859196+


(1)
AGO2.ip
(1)
B-CELL
(1)
BRAIN
(10)
BREAST
(8)
CELL-LINE
(9)
CERVIX
(2)
HEART
(1)
LIVER
(1)
OTHER
(40)
SKIN

Sense strand
CGGGCATCTTGCGCAACCTGCTTATCCGCTACCGGGACCACCTCATCTACGTGAGTGCCGCCCCGCCCGGTGCCCGTCCAGGCCCCCTCAGGCCCCGCCCCGCCCACCTCGCCCCACCCCGCCCGACTTGCCTCCGGCCCCGCCCTGCCGGGGCCCTGCCTCCTGAGACTTTGTCCGCTGTGCAGCTGGACCCCGGGGCCCCTGCTGGGGCCCATCTGCCGGCAGCCGCTCGGCGGGGTCTCATCCTCTT
.................................................................................................................................((....(((((((......)))))))..))...........................................................................................
......................................................................................................103.......................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM532887(GSM532887)
G761N. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR189783SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038859(GSM458542)
MM386. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR189786SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
...........................................................................................................CTCGCCCCACCCCGCGC..............................................................................................................................1715.000.00-2.00--1.00-2.00---1.00-----1.00---1.00---1.00-1.00---------1.00--------1.00--------1.00--------1.00-1.00-----------
..........................................................................................................CCTCGCCCCACCCCGCGC..............................................................................................................................1811.000.00---1.00-1.00-1.002.001.00-------1.00-----1.00------------------------1.00----------1.00------1.00----------
...........................................................................................................CTCGCCCCACCCCGCGCGC............................................................................................................................199.000.00---1.00------1.002.002.00---------------------1.00--------------------1.001.00--------------------
...........................................................................................................CTCGCCCCACCCCGCGCG.............................................................................................................................189.000.00---1.001.00---1.001.00----1.00-----1.001.00----------------------------------------1.00----1.00---------
.............................................................................................................CGCCCCACCCCGCCCGCG...........................................................................................................................187.000.00--------------1.001.001.00-2.00---2.00------------------------------------------------------
...........................................................................................................CTCGCCCCACCCCGCG...............................................................................................................................167.000.00-3.00----1.00----------------1.00--------1.00----------1.00---------------------------------
..........................................................................................................CCTCGCCCCACCCCGCG...............................................................................................................................175.000.00-----------------1.00-------------------1.001.00---1.00-1.00--------------------------------
..........................................................................................................CCTCGCCCCACCCCGCGCGC............................................................................................................................203.000.00---------1.00-1.00---------------------------------------1.00-------------------------
..........................................................................................................CCTCGCCCCACCCCGCGCG.............................................................................................................................192.000.00-----1.00---------1.00-------------------------------------------------------------
..........................................................................................................................................CCCGCCCTGCCGGGGACCA.............................................................................................192.000.00-------------------------2.00---------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGCGC..........................................................................................................................192.000.00-----------------------------------1.00---------------------1.00-------------------
.................................................................................................................................................................................................................................CCGCTCGGCGGGGTC..........1521.501.50------------0.50-------------0.50-----------------------------------------0.50--------
...........................................................................................................CTCGCCCCACCCCGCGTGC............................................................................................................................191.000.00---------------------1.00-------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGCGCC.........................................................................................................................201.000.00---------------------------------------1.00-------------------------------------
....................................................................................................................CCCCGCCCGACTTGCC......................................................................................................................1611.001.00---------------------------1.00-------------------------------------------------
.......................................................................................TCAGGCCCCGCCCCGCTCCG...............................................................................................................................................201.000.00----------------------------------------------1.00------------------------------
.........................................................................................................................................CCCCGCCCTGCCGGGGG................................................................................................171.000.00-----------------------------1.00-----------------------------------------------
..........................................................................................................CCTCGCCCCACCCCGCGTG.............................................................................................................................191.000.00----------1.00------------------------------------------------------------------
..........................................................................................................CCTCGCCCCACCCCGTGC..............................................................................................................................181.000.00------------------------1.00----------------------------------------------------
.....................................................................................CCTCAGGCCCCGCCCCGCCCCC...............................................................................................................................................221.000.00-------------------------------------------------1.00---------------------------
....................................................................................................CGCCCACCTCGCCCCCCC....................................................................................................................................181.000.00----------------------------------------------------1.00------------------------
..........................................................................................................................................CCCGCCCTGCCGGGGCGT..............................................................................................181.000.00-----------------------------------------------------1.00-----------------------
....................................................................................................................................................................................TGCAGCTGGACCCCGAT.....................................................171.000.00----------------------------------------1.00------------------------------------
.......................................................................................TCAGGCCCCGCCCCGATTC................................................................................................................................................191.000.00-------------1.00---------------------------------------------------------------
..........................................................................................................CCTCGCCCCACCCCGCCTA.............................................................................................................................191.000.00---------------------------------1.00-------------------------------------------
...........................................................................................................................................................................................................................CGGCAGCCGCTCGGCCCG.............181.000.00----------------------------1.00------------------------------------------------
...........................................................................................................CTCGCCCCACCCCGCGCAA............................................................................................................................191.000.00------------------------------------------------------------1.00----------------
..............................................................................................................................................................................................CCCCGGGGCCCCTGCTGAA.........................................191.000.00----------------------------------------------------------1.00------------------
..........................................................................................................CCTCGCCCCACCCCGTGCG.............................................................................................................................191.000.00-----1.00-----------------------------------------------------------------------
.................................................................................................................................................................................................................................CCGCTCGGCGGGGTCTCCGCG....211.000.00-------------------------------1.00---------------------------------------------
.......................................................................................TCAGGCCCCGCCCCGAT..................................................................................................................................................171.000.00-------------1.00---------------------------------------------------------------
..........................................................................................................................................................................................TGGACCCCGGGGCCC.................................................1570.140.14------------------------------------------------------------------------0.14----
.................................................................................................................................................TGCCGGGGCCCTGCC..........................................................................................1570.140.14--------------------------------------------------------------------------0.14--

Antisense strand
CGGGCATCTTGCGCAACCTGCTTATCCGCTACCGGGACCACCTCATCTACGTGAGTGCCGCCCCGCCCGGTGCCCGTCCAGGCCCCCTCAGGCCCCGCCCCGCCCACCTCGCCCCACCCCGCCCGACTTGCCTCCGGCCCCGCCCTGCCGGGGCCCTGCCTCCTGAGACTTTGTCCGCTGTGCAGCTGGACCCCGGGGCCCCTGCTGGGGCCCATCTGCCGGCAGCCGCTCGGCGGGGTCTCATCCTCTT
.................................................................................................................................((....(((((((......)))))))..))...........................................................................................
......................................................................................................103.......................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM532887(GSM532887)
G761N. (cervix)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR189783SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038859(GSM458542)
MM386. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR189786SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
............................................ATCTACGTGAGTGCCTTT............................................................................................................................................................................................ 182.000.00-------------------2.00---------------------------------------------------------
...........................................CGGCACTCACGTAGATG.............................................................................................................................................................................................. 1712.002.00-------2.00---------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGACC.......................................................................................................................... 192.000.002.00----------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGACGA......................................................................................................................... 202.000.001.00-1.00--------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGAC........................................................................................................................... 182.000.00--2.00--------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGACG.......................................................................................................................... 191.000.001.00----------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGACGAA........................................................................................................................ 211.000.001.00----------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGACGG......................................................................................................................... 201.000.001.00----------------------------------------------------------------------------
.............CGGTAGCGGATAAGCAGGTTG........................................................................................................................................................................................................................ 2111.001.00-----------------------------------------------1.00-----------------------------
...........................................................................................GCCCCGCCCCGCCCACCT............................................................................................................................................. 181.000.00--1.00--------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGAT........................................................................................................................... 181.000.001.00----------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGACCGT........................................................................................................................ 211.000.001.00----------------------------------------------------------------------------
........................................................GGACGGGCACCGGGCGGGGCGGC........................................................................................................................................................................... 2311.001.00----1.00------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGACCGAA....................................................................................................................... 221.000.00------------------------------1.00----------------------------------------------
.....................................................................................................................CCCGCCCGACTTGCCCAGG.................................................................................................................. 191.000.00-------------------------------------------------------------1.00---------------
....................................................................................................................CCCCGCCCGACTTGCCGT.................................................................................................................... 181.000.00-----------------------------------------1.00-----------------------------------
.............................................................................................................CGCCCCACCCCGCCCGACCG......................................................................................................................... 201.000.001.00----------------------------------------------------------------------------
...............................................................................................................CCCCACCCCGCCCGAAGC......................................................................................................................... 181.000.001.00----------------------------------------------------------------------------
.............................................................................................................CGCCCCACCCCGCCCGAGG.......................................................................................................................... 191.000.001.00----------------------------------------------------------------------------
..................................................................................................................................................................................................GGGGCCCCTGCTGGGGTCT..................................... 191.000.00----------------------------------------------------------------1.00------------
..............................................................CCGCCCGGTGCCCGTCCCG......................................................................................................................................................................... 191.000.00--------------------------------------------------1.00--------------------------
...........................................................................................................CGGGCGGGGTGGGGCGAG............................................................................................................................. 1820.500.500.50----------------------------------------------------------------------------
.................................................................................................CCCCGCCCACCTCGCCCCAA..................................................................................................................................... 200.500.00-----------------------------------------------------------------------0.50-----
.................................................................................................TGGGGCGAGGTGGGCGGGG...................................................................................................................................... 1920.500.50----------------------------------------------------------------------0.50------
...............................................................................................................AGTCGGGCGGGGTGGGG.......................................................................................................................... 1720.500.50---------------------------------------------------------------------0.50-------
.....................................................................................................................................................................................CCCGGGGTCCAGCTGC..................................................... 1650.200.20---------------------------0.20-------------------------------------------------
......................................................................................................GGGGTGGGGCGAGGTGGG.................................................................................................................................. 1870.140.14-------------------------------------------------------------------------0.14---
...............................................................................................................................................................................................AGCAGGGGCCCCGGG............................................ 1590.110.11---------------------------------------------------------------------------0.11-
........................................................ACCGGGCGGGGCGGC................................................................................................................................................................................... 1590.110.11----------------------------------------------------------------------------0.11