ID: uc010rea.1
GENE: RCN1(2)
chr11:32119696-32119945+


(3)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(16)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(1)
HELA 		(2)
LIVER 		(6)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCATGAGGCCTAGATTATGGGGTGGCTTGAAGGGACTGATATTAGAGGCATTCTGACATAGAATGTTTTAAAGAACTCAGTAGGTCGGGACCTTTTTTCCCTATATGTACCATTTGAGCATGCAGGATGAGTGATCTGGCAGGAAACGCCTTTCTTGACCGCACGGTTTAAAAACATTTCTGCATACATACATCCTGCAGGAAACCCCGCAGAGTTTCATGATTCTTCAGATCATCACACCTTTAAAAAG
................................................................(((((..((((((((..((((....))))......(((.(((((.........))))).))).)))))..))).....))))).......................................................................................................
............................................................61....................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR343335SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
.................................................................TTTTAAAGAACTCAGTAGGTCGG..................................................................................................................................................................2315.005.005.00-------------------------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGA...........................................................................................................2315.001.00-5.00------------------------------------------
.....................................................................................................................................................................................GCATACATACATCCTGCAGTT................................................214.000.00-----4.00--------------------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGGAT.........................................................................................................2514.002.00----4.00---------------------------------------
....................................................................................................................................................................................TGCATACATACATCCTGCAG..................................................2013.003.002.00--------------1.00----------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGGAA.........................................................................................................2513.003.00-------3.00------------------------------------
..................................................................................................................................................................................................................AGAGTTTCATGATTCTTCAGATCA................2422.502.50--------2.50-----------------------------------
..................................................................................................................................................................................TCTGCATACATACATCCTGCAGT.................................................232.000.00---------2.00----------------------------------
......................................................................................................................................................................................................................................ATCATCACACCTTTAAAAAG2022.002.00--1.50----------0.50------------------------------
....................................................................................................................................................................................TGCATACATACATCCTGCAGTT................................................2212.003.00-------------------------1.00--1.00---------------
................................................................GTTTTAAAGAACTCATATG.......................................................................................................................................................................192.000.00--2.00-----------------------------------------
........................................................................................................ATGTACCATTTGAGCATGCAGG............................................................................................................................2212.002.002.00-------------------------------------------
...........................................................................................................................................................................AAACATTTCTGCATACATACATCCT......................................................2512.002.00-----------2.00--------------------------------
.......................................................................................................................ATGCAGGATGAGTGATCTGGCAGG...........................................................................................................2412.002.001.00----------------1.00--------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGGA..........................................................................................................2412.002.00----------1.00-----------------------1.00---------
..................................................................................................................................................................................TCTGCATACATACATCCTG.....................................................1911.001.00-------------1.00------------------------------
..................................................................................................................................................................................TCTGCATACATACATCCTGCAGA.................................................231.000.00------------------------------1.00-------------
....................................................................................................................................................................................TGCATACATACATCCTGCAGT.................................................2111.003.00-----------------------------1.00--------------
........................................................................................................................TGCAGGATGAGTGATCTGGCATGA..........................................................................................................241.000.00------------------------------------1.00-------
..............................AGGGACTGATATTAGAGGCATT......................................................................................................................................................................................................2211.001.00-----------------------------------1.00--------
.......................................................................................................................ATGCAGGATGAGTGATCTGGCAG............................................................................................................2311.001.00----------------------1.00---------------------
....................................................................................................................................................................................TGCATACATACATCCTGCA...................................................1911.001.00-------------------1.00------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGGT..........................................................................................................2411.001.00------------1.00-------------------------------
........................................................................................................................TGCAGGATGAGTGATCTGGCAGG...........................................................................................................2311.001.00----------1.00---------------------------------
....................................................................................................................................................................................TGCATACATACATCCTGCAGTTT...............................................2311.003.00--------------------1.00-----------------------
.................................................ATTCTGACATAGAATGTTT......................................................................................................................................................................................1921.001.00----------------------------------------0.500.50--
........................................................................................................................TGCAGGATGAGTGATCTGGCAG............................................................................................................2211.001.00------------------1.00-------------------------
..................................................................................................................................................................................TCTGCATACATACATCCTGC....................................................2011.001.00---------------------------------1.00----------
.....................................................................................................................GCATGCAGGATGAGTGATCTGG...............................................................................................................2211.001.00---------------------------1.00----------------
.......................................................................................................................ATGCAGGATGAGTGATCTGGCA.............................................................................................................2211.001.00--------------------------1.00-----------------
....................................................................................................................................................................................TGCATACATACATCCTG.....................................................1711.001.00----------------1.00---------------------------
......................................................................................................................CATGCAGGATGAGTGATCTGGCA.............................................................................................................2311.001.00--------------------------------1.00-----------
.....................................................................................................................................................................................................................GTTTCATGATTCTTCAG....................1730.670.67-------------------------------------0.67------
...........................................................................................................................................................................................................................TGATTCTTCAGATCATCACACCTTTAAA...2820.500.50-------------------------------------------0.50
..............................................................................................................................................................................................................................TTCTTCAGATCATCACACCT........2020.500.50------------------------------------------0.50-
..........................................................................................................................................................................................................................ATGATTCTTCAGATCATCACAC..........2220.500.50--------------------------------------0.50-----

Antisense strand
CCATGAGGCCTAGATTATGGGGTGGCTTGAAGGGACTGATATTAGAGGCATTCTGACATAGAATGTTTTAAAGAACTCAGTAGGTCGGGACCTTTTTTCCCTATATGTACCATTTGAGCATGCAGGATGAGTGATCTGGCAGGAAACGCCTTTCTTGACCGCACGGTTTAAAAACATTTCTGCATACATACATCCTGCAGGAAACCCCGCAGAGTTTCATGATTCTTCAGATCATCACACCTTTAAAAAG
................................................................(((((..((((((((..((((....))))......(((.(((((.........))))).))).)))))..))).....))))).......................................................................................................
............................................................61....................................................................................147.....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR343335SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR189787SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
..............................................GGCATTCTGACATAGC............................................................................................................................................................................................ 164.000.00---4.00----------------------------------------
.......................................................ACATAGAATGTTTTAAAG................................................................................................................................................................................. 182.000.00------2.00-------------------------------------
.....................................................................................................................GCATGCAGGATGAGTCAAG.................................................................................................................. 192.000.00--1.00--------------------1.00--------------------
.......................................................ACATAGAATGTTTTAAG.................................................................................................................................................................................. 172.000.00------1.00-------1.00-----------------------------
............................................................................................................................................................................................TACATCCTGCAGGAAAAA............................................ 181.000.00---------------------1.00----------------------
.............................................................................................................................................................................................................................TGTGATGATCTGAAGAAT........... 1820.500.50------------------------0.50-------------------
..............................................................................................................................................................................................................TCTGAAGAATCATGAAACTCTGCGG................... 2520.500.50-------------------------------0.50------------
......................................................................................................................................................................................................CTGAAGAATCATGAAACTCTGCGGGGTTTCCT.................... 3220.500.50------------0.50-------------------------------
........................................................................................................................................................................................................TCTGAAGAATCATGAAACTCTGCGGGGTTTC................... 3120.500.50-------------------------------0.50------------
...............................................................................................................................................................................................................GAAGAATCATGAAACTCTGCG...................... 2120.500.50---------------------------------------0.50----
...............................................................................................................................................................................................................................GGTGTGATGATCTGAAGA......... 1820.500.50------------------------0.50-------------------