ID: uc010qqf.1_intron_2_0_chr10_103569974_r.3p
GENE: MGEA5(5)
chr10:103569924-103570173-


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(5)
BREAST 		(11)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(4)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(1)
OTHER 		(10)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TTTCTTGTAAGTTAGAAGAAATAACCTCTTCAGTTAAACCTTCAGTGAAGGTTCTTTTAGTTTTCTGTTCTGCTTTCTAAAAACATAGACTCTGTTCTTTAGAGCAACTTATGACTCTCATCTCTGCTGCACGAGAATATGAGATAGAGTTCATCTATGCGATCTCACCTGGATTGGATATCACTTTTTCTAACCCCAAGGAAGTATCCACATTGAAACGTAAATTGGACCAGGTAACTCCTTACTTTTT
..............................................................................................................((((((((.(((((..((.....)).....)))))))))).))).(((.((((((.....)))))).)))......................................................................
........................................................................................................105..........................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
........................................................................................................................................................................................................................AACGTAAATTGGACCAG.................17111.0011.00-7.00-----1.00----1.00--------1.00--1.00--------------------------
............................................................................................................TTATGACTCTCATCTCTGCTGCACGAGAATATGAGATAGAGTTCATCTATGCGATCTCACCTGGATTGGATATCACTTTTTCTAACCCC.....................................................8918.008.008.00--------------------------------------------------
.............................................................................................................TATGACTCTCATCTCTGCTGCACG.....................................................................................................................2413.003.00--1.00---2.00--------------------------------------------
..............................................................................................................ATGACTCTCATCTCTGCTGCACGA....................................................................................................................2413.003.00--3.00------------------------------------------------
...............................................................................................................TGACTCTCATCTCTGCTGCACG.....................................................................................................................2212.002.00-----------1.00---------------------------1.00-----------
..............................................................................................................................................................GCGATCTCACCTGGATTGGATATCACAA................................................................282.000.00-----2.00---------------------------------------------
..............................................................................................................................................................GCGATCTCACCTGGATTGGA........................................................................2012.002.00----------------------1.00-------------------1.00--------
......................................................................................................................................................................................................................GAAACGTAAATTGGACC...................1712.002.00---1.00----------------1.00------------------------------
.........................................................................................................................................................TCTATGCGATCTCACCTGGA.............................................................................2012.002.00-------2.00-------------------------------------------
...........................................................................................................................................................TATGCGATCTCACCTGGATTGG.........................................................................2211.001.00--------------------------------------------1.00------
..........................................................................................................ACTTATGACTCTCATCTCTGCTGCACGAGAA.................................................................................................................3111.001.00---------1.00-----------------------------------------
..................................................................................................................................................................................................CCCAAGGAAGTATCCACATTGAAAC...............................2511.001.00---1.00-----------------------------------------------
......................................................................TGCTTTCTAAAAACATAGACT...............................................................................................................................................................2111.001.00-------------------1.00-------------------------------
..........................................................................................................................TCTGCTGCACGAGAATATGAGATAGAGTT...................................................................................................2911.001.00--------------------------1.00------------------------
.............................................................................TAAAAACATAGACTCTGCA..........................................................................................................................................................191.000.00-------------------------------1.00-------------------
.................................................................................................................................................................................................CCCCAAGGAAGTATCC.........................................1611.001.00----1.00----------------------------------------------
.......................................................................................................................................................................................................................AAACGTAAATTGGACCAG.................1811.001.00----------------1.00----------------------------------
......................................................................................................AGCAACTTATGACTCTCATCTCTGC...........................................................................................................................2511.001.00--------------------------------------1.00------------
.............................................................................................................TATGACTCTCATCTCTGCTGCA.......................................................................................................................2211.001.00------------------1.00--------------------------------
............................................................................................................TTATGACTCTCATCTCTGCTGCACGAG...................................................................................................................2711.001.00---------------------------------------------1.00-----
.............................................................................................................TATGACTCTCATCTCTGCTGCACGA....................................................................................................................2511.001.00--1.00------------------------------------------------
..............................................................................................................ATGACTCTCATCTCTGCTGCACTAGA..................................................................................................................261.000.00---------1.00-----------------------------------------
.................................................................................................................................CACGAGAATATGAGATAGAGTTCA.................................................................................................2411.001.00----------1.00----------------------------------------
...................................................................................................................................CGAGAATATGAGATAGAGT....................................................................................................1911.001.00-----1.00---------------------------------------------
.........................................................................................................................................................................................................................ACGTAAATTGGACCAGGT...............1811.001.00----------------------------------1.00----------------
...........................................................................TCTAAAAACATAGACTCTGTTCTTTAG....................................................................................................................................................2711.001.00-----------------------1.00---------------------------
.......................................................................................................................ATCTCTGCTGCACGAGAATATGAG...........................................................................................................2411.001.00-------------------------1.00-------------------------
.................................................................................................................ACTCTCATCTCTGCTGCACG.....................................................................................................................2011.001.00-------------------------------------1.00-------------
.........................................................................................................AACTTATGACTCTCATCTCTGCTGCAC......................................................................................................................2711.001.00--------------------------------1.00------------------
....................................................................................................................................................................................................................TTGAAACGTAAATTGGACC...................1911.001.00--------------1.00------------------------------------
.............................................................................................................................................................................................................................AAATTGGACCAGGTAACTGAC........211.000.00--------1.00------------------------------------------
.......................................................................................................................................................................................................................AAACGTAAATTGGACCAGGTAA.............2211.001.00--------1.00------------------------------------------
.....................................................................................................................................................................................................AAGGAAGTATCCACATTGAAAC...............................2211.001.00---1.00-----------------------------------------------
...........................................................................................................................................................................................................................GTAAATTGGACCAGGTTT.............181.000.00----------1.00----------------------------------------
...........................................................................TCTAAAAACATAGACTCTGTTCT........................................................................................................................................................2311.001.00-----------------------------------1.00---------------
..................................................................................................................................ACGAGAATATGAGATAGAGTTCATCT..............................................................................................2611.001.00----1.00----------------------------------------------
................................................................CTGTTCTGCTTTCTAAAAACA.....................................................................................................................................................................2111.001.00-----------------------------------------1.00---------
..........................................................................................................................................................................................................................CGTAAATTGGACCAGGAAA.............191.000.00---------------------------------1.00-----------------
.....................................................................................................................................................................................................................TGAAACGTAAATTGGACCAGGT...............2211.001.00-----------------------------1.00---------------------
......................................................................................................AGCAACTTATGACTCTCATCTCT.............................................................................................................................2311.001.00----------------------------1.00----------------------
......................................................................................................................................................TCATCTATGCGATCTCACCTGGATTG..........................................................................2611.001.00------------------------------------1.00--------------
........................................................................................................................TCTCTGCTGCACGAGAATATGAG...........................................................................................................2311.001.00-------------------------------------------1.00-------
.............................................................................................................TATGACTCTCATCTCTGCTGCATA.....................................................................................................................2411.001.00------1.00--------------------------------------------
.................................................................................................................ACTCTCATCTCTGCTGCAC......................................................................................................................1911.001.00-----------------1.00---------------------------------
.........................................................................TTTCTAAAAACATAGACTCTGTTCTTTAG....................................................................................................................................................2911.001.00----------------------------------------1.00----------
.............................................................................................................TATGACTCTCATCTCTGCTGCACGAGA..................................................................................................................2711.001.00---------------1.00-----------------------------------
....................................................................................ATAGACTCTGTTCTTTAGAGCAAC..............................................................................................................................................2411.001.00------------1.00--------------------------------------
...................................................................................................................................................................................................................ATTGAAACGTAAATTGGACC...................2011.001.00---1.00-----------------------------------------------
.......................................................................................................................................................................................................................AAACGTAAATTGGACCAGGT...............2011.001.00----1.00----------------------------------------------
.........................................................................................................AACTTATGACTCTCATCTCTGCTGCA.......................................................................................................................2611.001.00------------------------------1.00--------------------
................................................................................................................................................TAGAGTTCATCTATGCGATCTCACCTGGA.............................................................................2911.001.00-----------1.00---------------------------------------
.........................................................................................................................................................................TGGATTGGATATCACTTT...............................................................1820.500.50-----------------------------------------------0.50---
.....................................................................................................................................................................................................AAGGAAGTATCCACATTGA..................................1920.500.50--------0.50------------------------------------------
....................................................................................................................................GAGAATATGAGATAGAG.....................................................................................................1720.500.50------------------------------------------------0.50--
..................AAATAACCTCTTCAGTT.......................................................................................................................................................................................................................1740.250.25--------------------------------------------------0.25
.............................................................................................................................................................TGCGATCTCACCTGGA.............................................................................1640.250.25-------------------------------------------------0.25-
............................................................................................................................................................................................................................TAAATTGGACCAGGT...............1560.170.17--------------0.17------------------------------------

Antisense strand
TTTCTTGTAAGTTAGAAGAAATAACCTCTTCAGTTAAACCTTCAGTGAAGGTTCTTTTAGTTTTCTGTTCTGCTTTCTAAAAACATAGACTCTGTTCTTTAGAGCAACTTATGACTCTCATCTCTGCTGCACGAGAATATGAGATAGAGTTCATCTATGCGATCTCACCTGGATTGGATATCACTTTTTCTAACCCCAAGGAAGTATCCACATTGAAACGTAAATTGGACCAGGTAACTCCTTACTTTTT
..............................................................................................................((((((((.(((((..((.....)).....)))))))))).))).(((.((((((.....)))))).)))......................................................................
........................................................................................................105..........................................................................182..................................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR191579(GSM715689)
102genomic small RNA (size selected RNA from . (breast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
..........................................................................................................................................................CTATGCGATCTCACCTGG.............................................................................. 182.000.00-------------2.00-------------------------------------
..........................................................................................................................................................CTATGCGATCTCACCTG............................................................................... 171.000.00---------------------------1.00-----------------------
......................................................................................................................................................................................................................GAAACGTAAATTGGAT.................... 161.000.00----------------------------------------------1.00----