ID: uc010opf.1_intron_12_0_chr1_67442406_f.3p
GENE: MIER1(13)
chr1:67447262-67447511+


(1)
B-CELL 		(5)
BRAIN 		(10)
BREAST 		(6)
CELL-LINE 		(11)
CERVIX 		(2)
FIBROBLAST 		(5)
HEART 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(26)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TATGCATTTTTCCTATAAACATGTAACCAAAAGGAGCTTTTCATTTAAATATTCAGATCCTGGTATGATAGATGAAGCACTGGAATGAATGTTAAGTGAATATTAGGATATATTTGTTAAGAAAGCCTTCTGAATTTAACCTCAACTAATTTTTAATTTTCAGCTCTTTTTAATATAAAAATTGTTTTATTAATTTTAAGGGATTACATGGATCGTCTTCTAGACGAAAGTGAAAGTGCTGCATCTAGTC
.........................................................................((((..((((((((((.((((..(((......((.((.((((....((((....)))))))).)).)))))..)))).))))..))))))..)))).................................................................................
................................................................65...........................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR553574(SRX182780)
source: Heart. (Heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR040036(GSM532921)
G243N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR040038(GSM532923)
G531N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040024(GSM532909)
G613N. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040030(GSM532915)
G013N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.....................................................................AGATGAAGCACTGGAGCT...................................................................................................................................................................1854.000.001.0033.006.00-2.00---------2.00-1.00----1.00--1.00----------1.00---1.00-1.00-------1.00---1.00---------------1.001.00----
.....................................................................AGATGAAGCACTGGAGCTC..................................................................................................................................................................1940.000.00--6.008.001.00--1.001.003.001.002.00-3.001.00---2.001.001.001.00--------1.00---1.00---------1.001.00-1.00---1.00-----------1.00--1.00--------
....................................................................TAGATGAAGCACTGGAGCT...................................................................................................................................................................1930.000.0029.00---1.00----------------------------------------------------------------------
....................................................................TAGATGAAGCACTGGAGCTC..................................................................................................................................................................2026.000.0017.00-2.00-4.00--1.00--------------------------------------------------------1.00--1.00-------
...................................................................ATAGATGAAGCACTGTAGC....................................................................................................................................................................1921.000.001.00-2.003.00-3.00--2.00---2.00---------1.00----1.00--1.00--1.00---1.00--1.00-------------1.001.00-------------------
...................................................................ATAGATGAAGCACTGTAG.....................................................................................................................................................................188.000.00---3.00-1.00------1.00--------------1.00------------------1.00-1.00--------------------------
....................................................................TAGATGAAGCACTGGAGC....................................................................................................................................................................186.000.006.00--------------------------------------------------------------------------
....................................................................TAGATGAAGCACTGGAGCTT..................................................................................................................................................................206.000.006.00--------------------------------------------------------------------------
.....................................................................AGATGAAGCACTGGAGC....................................................................................................................................................................174.000.00--2.00----------------1.00----1.00--------------------------------------------------
................................................................ATGATAGATGAAGCACTGGAATGAAT................................................................................................................................................................2612.002.00------2.00--------------------------------------------------------------------
...................................................................ATAGATGAAGCACTGTAGA....................................................................................................................................................................192.000.00---1.00-1.00---------------------------------------------------------------------
.....................................................................AGATGAAGCACTGGAGCTA..................................................................................................................................................................192.000.00--------1.00-------------------------------------------1.00----------------------
....................................................................TAGATGAAGCACTGGAGCTA..................................................................................................................................................................202.000.001.00-1.00------------------------------------------------------------------------
...................................................................ATAGATGAAGCACTGTCGC....................................................................................................................................................................192.000.00----------------------1.00-----1.00----------------------------------------------
....................................................................................................................................................................................................TAAGGGATTACATGGATCGTCTT...............................2312.002.00-----------------------------2.00---------------------------------------------
......................................................................................................................................................TTTTAATTTTCAGCTCCTAC................................................................................202.000.00-----------------2.00---------------------------------------------------------
...................................................................ATAGATGAAGCACTGTAGT....................................................................................................................................................................191.000.00------------------------------------------------------------1.00--------------
...................................................................ATAGATGAAGCACTGTATC....................................................................................................................................................................191.000.00-----1.00---------------------------------------------------------------------
........................................................................................................................................................................................................GGATTACATGGATCGTCTTC..............................2011.001.00-----------------------1.00---------------------------------------------------
...................................................................ATAGATGAAGCACTGGACCA...................................................................................................................................................................201.000.00----------------------------1.00----------------------------------------------
............................................................................................................................................................................................................................TAGACGAAAGTGAAAGTGCT..........2011.001.00--------------------------------------------------------------------1.00------
.........................................................................................................................................................................................................GATTACATGGATCGTCTTATA............................211.000.00--------------------------1.00------------------------------------------------
...................................................................ATAGATGAAGCACTGGAGCCT..................................................................................................................................................................211.000.00----------1.00----------------------------------------------------------------
.................................................................TGATAGATGAAGCACTGGAATGAATGT..............................................................................................................................................................2711.001.00------1.00--------------------------------------------------------------------
....................................................................TAGATGAAGCACTGGAGTGC..................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------
.....................................................................AGATGAAGCACTGGAGAA...................................................................................................................................................................181.000.00--1.00------------------------------------------------------------------------
.......................................................................................................TAGGATATATTTGTTAAGAA...............................................................................................................................2011.001.00--------------------------------1.00------------------------------------------
.............................................................................................................................................................................................................................AGACGAAAGTGAAAGTGCTGCATC.....2411.001.00----------------------------------------------------------1.00----------------
...................................................................ATAGATGAAGCACTGTGGT....................................................................................................................................................................191.000.00----------1.00----------------------------------------------------------------
.....................................................................AGATGAAGCACTGGATCTC..................................................................................................................................................................191.000.00--1.00------------------------------------------------------------------------
...................................................................ATAGATGAAGCACTGTAAA....................................................................................................................................................................191.000.00---1.00-----------------------------------------------------------------------
....................................................................TAGATGAAGCACTGGAGCAA..................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------
...................................................................ATAGATGAAGCACTGTAA.....................................................................................................................................................................181.000.00---------------------------------------------------------1.00-----------------
.............................................................................................................................................................................................................ACATGGATCGTCTTCTAGA..........................1911.001.00------------------------------------------1.00--------------------------------
................................................................................................................................................ACTAATTTTTAATTTCTCG.......................................................................................191.000.00------------------------------------------------------------------------1.00--
.........................................................................................................................................................................................................GATTACATGGATCGTCTTCT.............................2011.001.00-----------------------1.00---------------------------------------------------
...........................................................................................................................................................................................................TTACATGGATCGTCTTCTAG...........................2011.001.00-----------------------------------------------------------1.00---------------
......................................................................GATGAAGCACTGGAATGAATGT..............................................................................................................................................................2211.001.00-------------------------------------------------------------1.00-------------
.........................................................................................................................................................................................................GATTACATGGATCGTCTTCTA............................2111.001.00------1.00--------------------------------------------------------------------
.....................................................................AGATGAAGCACTGGAGCA...................................................................................................................................................................181.000.00--1.00------------------------------------------------------------------------
......................................................AGATCCTGGTATGATAGATGAAGCA...........................................................................................................................................................................2511.001.00----------------1.00----------------------------------------------------------
..........................................................................................................................................................................................................ATTACATGGATCGTCTTCTAGAC.........................2311.001.00------1.00--------------------------------------------------------------------
.........................................................................GAAGCACTGGAATGAATGT..............................................................................................................................................................1911.001.00-------1.00-------------------------------------------------------------------
...................................................................ATAGATGAAGCACTGTCG.....................................................................................................................................................................181.000.00-------------------------1.00-------------------------------------------------
......................................................................................................................................................................................................................GTCTTCTAGACGAAAGTGAAAGTGCTGCATC.....3111.001.00------------------------------------1.00--------------------------------------
................................................................................................................................................ACTAATTTTTAATTTTCTTTG.....................................................................................211.000.00-------------------------------------------1.00-------------------------------
...................................................................ATAGATGAAGCACTGTAGG....................................................................................................................................................................191.000.00-----1.00---------------------------------------------------------------------
....................................................TCAGATCCTGGTATGATAGATG................................................................................................................................................................................2211.001.00--------------------------------------1.00------------------------------------
.......................................................................ATGAAGCACTGGAATGAATG...............................................................................................................................................................2011.001.00-----------1.00---------------------------------------------------------------
....................................................................TAGATGAAGCACTGGAGCTG..................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------
..........................................................................AAGCACTGGAATGAATGTTA............................................................................................................................................................2011.001.00--------------------------------------------------------1.00------------------
..............................................................................................................................................................................................................................GACGAAAGTGAAAGTGCTGCA.......2111.001.00-----------------------------------------------------------------1.00---------
...................................................................ATAGATGAAGCACTGGAGCCC..................................................................................................................................................................211.000.00-------------------------1.00-------------------------------------------------
....................................................................TAGATGAAGCACTGGAGTTT..................................................................................................................................................................201.000.001.00--------------------------------------------------------------------------
....................................................................TAGATGAAGCACTGGAGA....................................................................................................................................................................181.000.001.00--------------------------------------------------------------------------
.....................................................................AGATGAAGCACTGGAGCC...................................................................................................................................................................181.000.00-1.00-------------------------------------------------------------------------
..........................................................................AAGCACTGGAATGAATG...............................................................................................................................................................1740.250.25-------------------------------------------------------------------------0.25-
............................................................................GCACTGGAATGAATG...............................................................................................................................................................1590.110.11--------------------------------------------------------------------------0.11

Antisense strand
TATGCATTTTTCCTATAAACATGTAACCAAAAGGAGCTTTTCATTTAAATATTCAGATCCTGGTATGATAGATGAAGCACTGGAATGAATGTTAAGTGAATATTAGGATATATTTGTTAAGAAAGCCTTCTGAATTTAACCTCAACTAATTTTTAATTTTCAGCTCTTTTTAATATAAAAATTGTTTTATTAATTTTAAGGGATTACATGGATCGTCTTCTAGACGAAAGTGAAAGTGCTGCATCTAGTC
.........................................................................((((..((((((((((.((((..(((......((.((.((((....((((....)))))))).)).)))))..)))).))))..))))))..)))).................................................................................
................................................................65...........................................................................................................174..........................................................................
SizePerfect hitTotal NormPerfect NormSRR553574(SRX182780)
source: Heart. (Heart)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR040036(GSM532921)
G243N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR040038(GSM532923)
G531N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040024(GSM532909)
G613N. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040030(GSM532915)
G013N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577590(Rovira)
total RNA. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR040006(GSM532891)
G601N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
........................................ACCAGGATCTGAATATTTAAATGA.......................................................................................................................................................................................... 2413.003.00---------------3.00-----------------------------------------------------------
..............................................................................ACTGGAATGAATGTTCCGA......................................................................................................................................................... 191.000.00--------------------------------------------------1.00------------------------
..............................................................................ACTGGAATGAATGTTCGGT......................................................................................................................................................... 191.000.00-------1.00-------------------------------------------------------------------
...ATGTTTATAGGAAAAATGC.................................................................................................................................................................................................................................... 1911.001.00------1.00--------------------------------------------------------------------
..............................................................................ACTGGAATGAATGTTCGGG......................................................................................................................................................... 191.000.00----1.00----------------------------------------------------------------------
.............................................................................................................................TTAGTTGAGGTTAAATTCAGAAGG..................................................................................................... 2411.001.00----------------1.00----------------------------------------------------------
................................................................................................................................ATTAGTTGAGGTTAAATTCAGA.................................................................................................... 2211.001.00-------------------------------1.00-------------------------------------------
..............................................................................ACTGGAATGAATGTTCTTT......................................................................................................................................................... 191.000.00-----------------------------------------------------------------------1.00---
..............................................................................ACTGGAATGAATGTTAGG.......................................................................................................................................................... 181.000.00----1.00----------------------------------------------------------------------
....................................................................................................................................................................................................................................AGTGAAAGTGCTGCATCTAGCT 221.000.00--------------------1.00------------------------------------------------------
.................................................................................................................TTGTTAAGAAAGCCTTC........................................................................................................................ 171.000.00--------------------------------------------------------------1.00------------
....................................................................................................................AAATTCAGAAGGCTTTCTTAA................................................................................................................. 2111.001.00--------------------------1.00------------------------------------------------
......................................................................................................................................................................................CTTAAAATTAATAAAACA.................................................. 1830.670.67---------0.33---------------------0.33-------------------------------------------