ID: uc010ojr.1_intron_5_0_chr1_41536394_r.5p
GENE: (3)
chr1:41540691-41540940-


(2)
AGO1.ip
(2)
AGO2.ip
(1)
BREAST
(16)
CELL-LINE
(1)
CERVIX
(2)
HEART
(2)
HELA
(3)
LIVER
(1)
OTHER
(9)
SKIN
(1)
TESTES

Sense strand
CTGAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGGTAGGTAAAATGTGGGTTTCCCAGAAAGGAATAAGGGTTTATAAAGGGGTCATTCGGCCAGGCGCCGTGGCTCACGCCTGTAATCCCAGCACTTAATGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGATGAAACCCCATCTCTACTAAAAATACAAAAAATTAACCAGGCG
.......................................................................................................((.(((...((((.(((((...........(((((........)))))))))).))))))).))...................................................................................
.....................................................................................................102....................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038856(GSM458539)
D11. (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................................................TGAGGTCAGGAGATCGAGACCATCCGGCT...................................................299.000.006.003.00------------------------------------
.........................................................................................................................................................................ATGAGGTCAGGAGATCGAGACCATCCGGCT...................................................306.000.004.002.00------------------------------------
.................CCAAAGAAGAGAGGTCAGG......................................................................................................................................................................................................................196.000.00---3.00-----1.00--------------------1.00-1.00-----
..................................................................................................................................................TGGGAGGCCGAGGCGGGCGGGGC.................................................................................235.000.001.004.00------------------------------------
................................CCCAAACCTGGCAGCAAGA.......................................................................................................................................................................................................193.000.00-------2.00--1.00---------------------------
..........................................................................................................................................................................TGAGGTCAGGAGATCGAGACCCTGG.......................................................252.000.002.00-------------------------------------
..................................................................................................................................................TGGGAGGCCGAGGCGGGCGGGGCT................................................................................242.000.002.00-------------------------------------
..........................................................................................................GCCAGGCGCCGTGGCTTAG.............................................................................................................................192.000.00------2.00-------------------------------
......................................................................................................................................................................ATCATGAGGTCAGGAGATCGAGACCATCCGGC....................................................322.000.002.00-------------------------------------
.........................................................................................................................................................................ATGAGGTCAGGAGATCGAGACCATCCGTCC...................................................302.000.002.00-------------------------------------
.........................................................................................................................................................................ATGAGGTCAGGAGATCGAGACCCTGG.......................................................261.000.00-1.00------------------------------------
............................................................................................................................................................................AGGTCAGGAGATCGAGACCATCCGGCA...................................................271.000.00-1.00------------------------------------
..........................................................................................................................CACGCCTGTAATCCCAGCACTTA.........................................................................................................2301.001.00------------1.00-------------------------
............................................................................................................................................................AGGCGGGCGGATCATGAAGCC.........................................................................211.000.00-1.00------------------------------------
...................................................................................................................................................GGGAGGCCGAGGCGGGCGGGTCC................................................................................231.000.00---------------1.00----------------------
............................................................................................................................................................................AGGTCAGGAGATCGAGACCATCCGAC....................................................261.000.001.00-------------------------------------
............................................................................................................................................................AGGCGGGCGGATCATGAGGTCAGGAGCCCA................................................................301.000.00-1.00------------------------------------
.................................................................................................................................................................................AGGAGATCGAGACCATCCTGGCTCTTT..............................................271.000.00--------------------------1.00-----------
.......................................................................................................................................................................TCATGAGGTCAGGAGATCGAGACCATCCGGC....................................................311.000.001.00-------------------------------------
...................................................................................................................................................................................GAGATCGAGACCATCCGCC....................................................191.000.00-------------------1.00------------------
..........................................................................................................................................................................TGAGGTCAGGAGATCGAGACGGCG........................................................241.000.001.00-------------------------------------
...................................................................................................................................................GGGAGGCCGAGGCGGGCGGGTCA................................................................................231.000.00----------------------------1.00---------
...............................................................................................................................................................................TCAGGAGATCGAGACCATCCGACC...................................................241.000.001.00-------------------------------------
...................................................................................................................................................GGGAGGCCGAGGCGGGCGGG...................................................................................201.000.00--------1.00-----------------------------
....................................................................................................................................................................................AGATCGAGACCATCCTGCCCC.................................................211.000.001.00-------------------------------------
..................................................................................................................................................TGGGAGGCCGAGGCGGGCGGGGGT................................................................................241.000.001.00-------------------------------------
.......................................................................................................................................................................TCATGAGGTCAGGAGATCGAGACCATCCAGCT...................................................321.000.001.00-------------------------------------
.........................................................................................................................................................................ATGAGGTCAGGAGATCGAGACGGCG........................................................251.000.001.00-------------------------------------
.........................................................................................................................................................................ATGAGGTCAGGAGATCGAGACCATCCAGCT...................................................301.000.00-1.00------------------------------------
................................................................................................................................................................................CAGGAGATCGAGACCATCCTGC....................................................221.000.00-------------------------1.00------------
.............................................................GTGGGTTTCCCAGAAAGGAAT........................................................................................................................................................................2111.001.00----------------------1.00---------------
......................GAAGAGAGGTCCCAAACCTGGCAGCAAG........................................................................................................................................................................................................2811.001.00----1.00---------------------------------
...................................................................................................................................................................CGGATCATGAGGTCAGGAGATCGAGAAA...........................................................281.000.00-------------1.00------------------------
.....................................................................................................................................TCCCAGCACTTAATGGTTTG.................................................................................................201.000.00------------------------1.00-------------
......................................................................................................................................................................................ATCGAGACCATCCTGGCTAACACGATGAAAC.....................................3101.001.00--1.00-----------------------------------
...................................................................................................................................................................CGGATCATGAGGTCAGGAGATCGAA..............................................................251.000.00-----1.00--------------------------------
....................AAGAAGAGAGGTCCCAAACC..................................................................................................................................................................................................................2011.001.00-----------------1.00--------------------
.........................................................................................................................TCACGCCTGTAATCCCAGCACTTA.........................................................................................................2401.001.00--------------------1.00-----------------
.........................................................................................................................................................................ATGAGGTCAGGAGATCGAGACCATCCGACT...................................................301.000.001.00-------------------------------------
.............................................................................................................AGGCGCCGTGGCTCACGTCCG........................................................................................................................211.000.001.00-------------------------------------
............................................................................................................................................................................AGGTCAGGAGATCGAGACCATCCGGT....................................................261.000.00-1.00------------------------------------
.................................................................................................................................................................GGCGGATCATGAGGTCAGGAGATCGAGCAA...........................................................301.000.00--1.00-----------------------------------
........................................................................................................................................................................................CGAGACCATCCTGGCTAACACGATGAAAAGA...................................311.000.00-----------------------------------1.00--
......................................................................................................................................................AGGCCGAGGCGGGCGGAGGAC...............................................................................211.000.001.00-------------------------------------
............................................................................................................................................................................AGGTCAGGAGATCGAGACCATCCGC.....................................................251.000.001.00-------------------------------------
.................................................................................................................................................................................AGGAGATCGAGACCATCCTGGCTCTG...............................................261.000.00----1.00---------------------------------
..................................................................................................................................................TGGGAGGCCGAGGCGGGCGGAGAGG...............................................................................251.000.001.00-------------------------------------
..................................................................................................................................................................................GGAGATCGAGACCATCCTGCCTA.................................................231.000.00--------1.00-----------------------------
..........................................................................................................................................................................TGAGGTCAGGAGATCGAGACCATCCAGC....................................................281.000.001.00-------------------------------------
.......................................................................................................................................................................TCATGAGGTCAGGAGATCGAGAGCAT.........................................................261.000.00---------------------------------1.00----
.......................................................................................................................................................................................TCGAGACCATCCTGGCTAACACGC...........................................241.000.00--------------1.00-----------------------
.................................................................................................................................................................................AGGAGATCGAGACCATCCGGTG...................................................221.000.001.00-------------------------------------
...............................................................................................................................................................CGGGCGGATCATGAGGTCACGGG....................................................................231.000.001.00-------------------------------------
.................................................................................................................................................................................AGGAGATCGAGACCATCCTGGCTAC................................................251.000.00-----------1.00--------------------------
.................CCAAAGAAGAGAGGTCAGGA.....................................................................................................................................................................................................................201.000.00---------1.00----------------------------
..................................................................................................................................................TGGGAGGCCGAGGCGGGCGGGGCC................................................................................241.000.00-1.00------------------------------------
.......................................................................................................................................................................TCATGAGGTCAGGAGATCGAGACCATCCGGCT...................................................321.000.00-1.00------------------------------------
.........................................................................................................................................................................ATGAGGTCAGGAGATCGAGACCCTTG.......................................................261.000.001.00-------------------------------------
.................................................................................................................................................ATGGGAGGCCGAGGCGGGAGGC...................................................................................221.000.001.00-------------------------------------
....................................................................................................................................................................GGATCATGAGGTCAGGAGATCGAGG.............................................................251.000.00-----1.00--------------------------------
.....................................................................................................ATTCGGCCAGGCGCCGTGGCTCACGC...........................................................................................................................2620.500.50-0.50------------------------------------
................CCCAAAGAAGAGAGGT..........................................................................................................................................................................................................................1670.140.14-------------------------------------0.14

Antisense strand
CTGAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGGTAGGTAAAATGTGGGTTTCCCAGAAAGGAATAAGGGTTTATAAAGGGGTCATTCGGCCAGGCGCCGTGGCTCACGCCTGTAATCCCAGCACTTAATGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGATGAAACCCCATCTCTACTAAAAATACAAAAAATTAACCAGGCG
.......................................................................................................((.(((...((((.(((((...........(((((........)))))))))).))))))).))...................................................................................
.....................................................................................................102....................................................................173...........................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR189783SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037943(GSM510481)
293DcrTN. (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038856(GSM458539)
D11. (cell line)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........TGGGACCTCTCTTCTTTGGGAATTTC...................................................................................................................................................................................................................... 2612.002.002.00-------------------------------------
........................................................................................................CGGCCAGGCGCCGTGGCTCACGCCTGTCGAC................................................................................................................... 312.000.00-2.00------------------------------------
.........................................................................................................................................................................................................................GCCTGGTTAATTTTTTGTATTTTTAGTAGAGA. 3202.002.00--2.00-----------------------------------
............................................................................................CCGAATGACCCCTTT............................................................................................................................................... 1511.001.00----------------1.00---------------------
.......................................................................................................................................................GGCCGAGGCGGGCGGAATTA............................................................................... 201.000.00------------------1.00-------------------
.......................................................................................................................................................................................TCGAGACCATCCTGGCTAACCCT............................................ 231.000.00-1.00------------------------------------
..............................................................................................................GGCGCCGTGGCTCACGCCTGTAAGACC................................................................................................................. 271.000.001.00-------------------------------------
......................................................................................................................................................AGGCCGAGGCGGGCGGATCATTGGG........................................................................... 251.000.00-1.00------------------------------------
.......................................................................................................................................................................................................TAACACGATGAAACCTGG................................. 181.000.00-----------------------------1.00--------
...............................................................................................................................................................CGGGCGGATCATGAGGTCAGGTA.................................................................... 231.000.00-----------------------1.00--------------
........................................................................................................CGGCCAGGCGCCGTGGCTCACGCCTGTCG..................................................................................................................... 291.000.00-1.00------------------------------------
...........................................................................................................CCAGGCGCCGTGGCTCACGCCTAC....................................................................................................................... 241.000.001.00-------------------------------------
.......................................................................................................TCGGCCAGGCGCCGTGGCTCACGCCTGTCGG.................................................................................................................... 311.000.00-1.00------------------------------------
..............................................................................................................................................................................................CATCCTGGCTAACACGAAAC........................................ 201.000.00---------------------1.00----------------
.............................................................................................................................................................................................................GATGAAACCCCATCTCTACCG........................ 211.000.00-1.00------------------------------------
........................................................................................................................................................................................................AACACGATGAAACCCCATCGGC............................ 221.000.00---------------------------1.00----------
.................................................................................................................................................................................AGGAGATCGAGACCATCCTTATA.................................................. 231.000.00-------------------------------1.00------
.................................................................................................................GCCGTGGCTCACGCCTCGGG..................................................................................................................... 201.000.00-1.00------------------------------------
...................................................................................................................................................................................................................ACCCCATCTCTACTAAAAATACAAAAAAACC........ 311.000.001.00-------------------------------------
...........................................................................................................CCAGGCGCCGTGGCTCACGCCTGTAAC.................................................................................................................... 271.000.00-1.00------------------------------------
.......................................................................................................................................................GGCCGAGGCGGGCGGATCACTG............................................................................. 221.000.00-1.00------------------------------------
...............................................AAGGTAGGTAAAATGTGTA........................................................................................................................................................................................ 191.000.00----------------------------------1.00---
......................TTTGGGACCTCTCTTC.................................................................................................................................................................................................................... 1620.500.50------------------------------------0.50-