ID: uc010oia.1_intron_2_0_chr1_36772507_f
GENE: SH3D21(3)
chr1:36772457-36772817+


(1)
AGO1.ip 		(1)
AGO2.ip 		(10)
B-CELL 		(4)
BRAIN 		(15)
BREAST 		(26)
CELL-LINE 		(9)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(2)
HELA 		(3)
LIVER 		(3)
OTHER 		(1)
OVARY 		(1)
RRP40.ip 		(38)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
CCTGCGGGGCTCCGGAGAGGCGCGGAGGCCGCGCTGTGCGCGCCGCCGAGGTGAGCGCAAGGGCGGGGACGGGCGCCGGTGGGCGGGTGCACGGAGCCAGTGCGACCCCGGCGTCTCCGGCTCTTAGTGACGGGCGCGGCTCTGGGCGGGACCTCGGGGCCGCCCTGCGGTCTGTGATTGGTTCTCGAGTGCAATGCTCCGCCCTGGGGCGGGGCTGGAGGGACCAAAGGCTACGTGCGCGCCTTGCGCTTCCCCCAGCTCCTCTGACTGGGGCGTCCGACTGGAGCTCAGCCGCGCTTGTCCGGTGCTAGGTCATCCTGCCAAACACCCGAGGCCCCAAAGATGGTGCAAAGTGAACTTC
.........................................................................................................................................................................................................................................................................((((..((((.(((((.((.((......)).)).))).)))))).))))...............................................
.........................................................................................................................................................................................................................................................................266................................................317..........................................
SizePerfect hitTotal NormPerfect NormSRR040037(GSM532922)
G243T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040041(GSM532926)
G612T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040017(GSM532902)
G645T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532887(GSM532887)
G761N. (cervix)		GSM379268(GSM379268)
Small RNA from serous ovarian cancer tissue. (ovary)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR040027(GSM532912)
G220T. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
..............................................................................................................................................................................................................................................................................GGGCGTCCGACTGGAGCT.........................................................................1817.007.00----2.00---------2.00---------------------------------1.00---------------------1.00-----------------------1.00------------------------
....................................................................................................................................................................................................................................................................CCTCTGACTGGGGCGTCCGACATC.............................................................................2416.001.00---6.00-------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................CTGACTGGGGCGTCCGA.................................................................................1713.003.00--2.00------------------------------------------------------------------------------------------------1.00-------------------
..........................................................................................................................................................................................................................................................................ACTGGGGCGTCCGACTGGAG...........................................................................2013.003.00-2.00----------------------------------------------------------------------------1.00----------------------------------------
.......................................................................................................................................................................................................................................................................CTGACTGGGGCGTCCGAC................................................................................1813.003.00----1.00------------------1.00---------------------1.00-------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................CTGACTGGGGCGTCCGACTGG.............................................................................2113.003.00-1.00---------------------------1.00-----------------------------1.00-----------------------------------------------------------
......................................................................................................................................................................................................................................................................TCTGACTGGGGCGTCC...................................................................................1622.502.50-----------------------------------0.50--0.501.00-------------------------------------------------------0.50-----------------------
...........................................................................................................................................................................................................................GGGACCAAAGGCTACGTGCG..........................................................................................................................2012.002.00-2.00---------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................GTCCGACTGGAGCTCAGCCGC..................................................................2112.002.00--2.00--------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................CTGACTGGGGCGTCCGACTGGAG...........................................................................2312.002.00-2.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................ACTGGGGCGTCCGACTGG.............................................................................1812.002.00----------1.00----------------------------------------------------------------------------------1.00-------------------------
...................................................................................................................................................................................................................................................................................TCCGACTGGAGCTCAGCCGCG.................................................................2112.002.00--------------------1.00---------1.00----------------------------------------------------------------------------------------
................................................................GGGGACGGGCGCCGGCG........................................................................................................................................................................................................................................................................................172.000.00------1.00----------------------------------------------------------------1.00-----------------------------------------------
.......................................................................................................................................................................CGGTCTGTGATTGGTTCTCG..............................................................................................................................................................................2012.002.00------------------2.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................CTGACTGGGGCGTCCGACTG..............................................................................2012.002.00-----------------------1.00------------------------------------------1.00----------------------------------------------------
..................................................................................................................................................................................................................................................................CTCCTCTGACTGGGGCGTCCGA.................................................................................2212.002.00--------1.00-------------------------------------------------------------------------------1.00------------------------------
......................................................................................................................................................................................................................................................................TCTGACTGGGGCGTCCGA.................................................................................1812.002.00-----------------------------------------1.00-------------1.00---------------------------------------------------------------
..................................................................................................................................................................................................................................................................................GTCCGACTGGAGCTCAGCT....................................................................1912.001.00-----------------2.00-----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................GGGGCGTCCGACTGGAGC..........................................................................1812.002.00--2.00--------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................CTCCTCTGACTGGGGCGTC....................................................................................1912.002.00-----1.00----------------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................CGCGCTTGTCCGGTGC.....................................................1611.001.00---------------------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................CCTCTGACTGGGGCGTCCGACTGG.............................................................................2411.001.00--------------------1.00--------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................CTGGGGCGTCCGACTGGAGCTCAGC.....................................................................2511.001.00-----------------------------------------------------------------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................GGGGCGTCCGACTGGAGCT.........................................................................1911.001.00-------------------------------------------------------------------------------------------1.00---------------------------
.........................................................................................................................................................................................................................................................................GACTGGGGCGTCCGACTG..............................................................................1811.001.00----1.00------------------------------------------------------------------------------------------------------------------
...........................................................................CCGGTGGGCGGGTGCCGGC...........................................................................................................................................................................................................................................................................191.000.00---------------1.00-------------------------------------------------------------------------------------------------------
...................................................................................................................................................................CCTGCGGTCTGTGATTGGGG..................................................................................................................................................................................201.000.00-------------------------------------------------------------------------------------1.00---------------------------------
...........................................................................................................................................................................................................................................................CCCCCAGCTCCTCTGACTGG..........................................................................................2011.001.00--------------1.00--------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................CTGGGGCGTCCGACTGGA............................................................................1811.001.00-------------------------------------------------1.00---------------------------------------------------------------------
.......................................................................................................GACCCCGGCGTCTCCACCA...............................................................................................................................................................................................................................................191.000.00---------------------------------------------------------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................................................................................ACTGGGGCGTCCGACT...............................................................................1611.001.00---------------------------------------------------------1.00-------------------------------------------------------------
...................................................................................................................................................................................................................................................................TCCTCTGACTGGGGCGTCCGACTG..............................................................................2411.001.00-----------------------------------------------------------------------------------------------------1.00-----------------
..................................................................................................................................................................................................................................................CTTGCGCTTCCCCCAG.......................................................................................................1611.001.00-------------------------------------------------------------------------------1.00---------------------------------------
.....................................................................................................................................................................................................................................................................CTCTGACTGGGGCGTCCGACT...............................................................................2111.001.00--------------------------------------1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GGGACCAAAGGCTACGTGCGCG........................................................................................................................2211.001.00--------1.00--------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGGAGCTCAGCCGCGCTTGTC...........................................................2111.001.00-------------------------------------------------------------------------------------------------1.00---------------------
....................................................................................................................................................................................................................................................................................CCGACTGGAGCTCAGCCGCGC................................................................2111.001.00------1.00----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................GAGCTCAGCCGCGCTTGTCCG.........................................................2111.001.00----1.00------------------------------------------------------------------------------------------------------------------
..........................................................AAGGGCGGGGACGGGCAGAG...........................................................................................................................................................................................................................................................................................201.000.00------------------------------------------------------------------------------------------1.00----------------------------
.................................................................................................................................................................................................................................................................................CGTCCGACTGGAGCTCAGCCGCGCTTGTCCGG........................................................3211.001.00----------------1.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................CCTCTGACTGGGGCGTCCGACTG..............................................................................2311.001.00-----------1.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................CGGGGCCGCCCTGCGG...............................................................................................................................................................................................1611.001.00---------------1.00-------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................TCTGACTGGGGCGTC....................................................................................1521.001.00---------------------------------------0.50------------------------------------------------------------------0.50------------
................................................................................................................................................................................................................................................................AGCTCCTCTGACTGGGGCGTCTGA.................................................................................241.000.00--------------------------1.00--------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................GACTGGGGCGTCCGACTGGA............................................................................2011.001.00--------------------------------1.00--------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................CTGACTGGGGCGTCCGACTGGA............................................................................2211.001.00-----------1.00-----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................GGCGTCCGACTGGAGCTCAG......................................................................2011.001.00----------------------------------------------------------1.00------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................CGACTGGAGCTCAGCCGCGCT...............................................................2111.001.00----------------------------------------------------1.00------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................GTCCGACTGGAGCTCAGC.....................................................................1811.001.00---------------------------------------------------------------------------------1.00-------------------------------------
.................................................................................................................................................................................................................................................CCTTGCGCTTCCCCCCCC......................................................................................................181.000.00------------1.00----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................ATCCTGCCAAACACCCGAGGCCCCAAAGATGGT..............3311.001.00----------------------------------------------------------------------------------------------------1.00------------------
..........................................................................GCCGGTGGGCGGGTGCCGGC...........................................................................................................................................................................................................................................................................201.000.00--------------------------------------------------------------------------------------------------1.00--------------------
...................................................................................................................................................................................................................................................................TCCTCTGACTGGGGCGTCCG..................................................................................2011.001.00--------------------------------------------------------------------------------------------1.00--------------------------
.....................................................................................................................................................................................................................................................................................CGACTGGAGCTCAGCCGCG.................................................................1911.001.00------------------------------------1.00----------------------------------------------------------------------------------
..................................................................................................................................................CGGGACCTCGGGGCCGCCGT...................................................................................................................................................................................................201.000.00------------------------------------------------------1.00----------------------------------------------------------------
......................................................................................................................................CGCGGCTCTGGGCGGCCGC................................................................................................................................................................................................................191.000.00------1.00----------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................CTGACTGGGGCGTCCGACTGGAGCTCAGCCGC..................................................................3211.001.00-------------------------------------------1.00---------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................CCTCTGACTGGGGCGTCCGA.................................................................................2011.001.00---------------------1.00-------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................CCGACTGGAGCTCAGCCGCGCTTTCT...........................................................261.000.00--------------------------------------------------------------------------------1.00--------------------------------------
........................................................................................................................................................................................................................................................................TGACTGGGGCGTCCGACTGGAGC..........................................................................2311.001.00------------------------------------------------------------------------------------------------1.00----------------------
.............................................................................................................................................................................................................................................................................GGGGCGTCCGACTGGAGCTCAGC.....................................................................2311.001.00-----------------------------------1.00-----------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................GACTGGGGCGTCCGACTGG.............................................................................1911.001.00-------------------------------1.00---------------------------------------------------------------------------------------
.............................................................GGCGGGGACGGGCGCCG...........................................................................................................................................................................................................................................................................................1711.001.00------1.00----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................CCTCTGACTGGGGCGTCCGAAA...............................................................................2211.001.00----------------------------------------------1.00------------------------------------------------------------------------
..........................................................AAGGGCGGGGACGGGCA..............................................................................................................................................................................................................................................................................................171.000.00-----------------------------------------------------------------------------------1.00-----------------------------------
...........CCGGAGAGGCGCGGAGCTG...........................................................................................................................................................................................................................................................................................................................................191.000.00------------------------------------------------------------------------1.00----------------------------------------------
.......................................................................................................GACCCCGGCGTCTCCACTA...............................................................................................................................................................................................................................................191.000.00-----------------------------------------------------------------1.00-----------------------------------------------------
................................................................GGGGACGGGCGCCGGC.........................................................................................................................................................................................................................................................................................161.000.00--------------------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................GCTCCTCTGACTGGGGCGTCCGA.................................................................................2311.001.00---------------------1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................GGGCGTCCGACTGGAGCTC........................................................................1911.001.00-------------------------------1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................GCTTGTCCGGTGCTAGGT................................................1811.001.00---------------------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................CCGACTGGAGCTCAGCCGC..................................................................1911.001.00------------------------------1.00----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................GGCGTCCGACTGGAGCTCAGC.....................................................................2111.001.00--------------------------------------------------------------1.00--------------------------------------------------------
....................................................................................................................................................................................................................................................................CCTCTGACTGGGGCGTCCGAC................................................................................2111.001.00-----------------------------------------------------------------------------------------1.00-----------------------------
.................AGGCGCGGAGGCCGCGGA......................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------1.00-------------------------------------------
..................................................................................................................................................................................................................................................................CTCCTCTGACTGGGGCGTCCG..................................................................................2111.001.00----------------------------1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................CTCTGACTGGGGCGTCCGA.................................................................................1911.001.00---------------------------------------------------1.00-------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................TGGAGCTCAGCCGCGC................................................................1620.500.50----------------------------------0.50------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................CAGCTCCTCTGACTGGG.........................................................................................1720.500.50------------------------------------0.50----------------------------------------------------------------------------------
......................................................................................................CGACCCCGGCGTCTC....................................................................................................................................................................................................................................................1520.500.50-----------------------------------------------------------------------------------------------------------0.50-----------
.............GGAGAGGCGCGGAGGCC...........................................................................................................................................................................................................................................................................................................................................1720.500.50-----------------------------------------------0.50-----------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................CTGGAGCTCAGCCGCGC................................................................1720.500.50---------------------------------------------------------------------------------------------------------0.50-------------
..................................................................................................................................................................................................................................................................CTCCTCTGACTGGGGC.......................................................................................1670.140.14-----------------------------------------0.14-----------------------------------------------------------------------------
.................................................................................................................................................................................................................CGGGGCTGGAGGGAC.........................................................................................................................................1570.140.14----------------------------------------------------------------------------------------------------------------------0.14
......................................................................................................................................................................................................CCGCCCTGGGGCGGGG...................................................................................................................................................1670.140.14---------------------------------------------------------------------------------------------------------------------0.14-

Antisense strand
CCTGCGGGGCTCCGGAGAGGCGCGGAGGCCGCGCTGTGCGCGCCGCCGAGGTGAGCGCAAGGGCGGGGACGGGCGCCGGTGGGCGGGTGCACGGAGCCAGTGCGACCCCGGCGTCTCCGGCTCTTAGTGACGGGCGCGGCTCTGGGCGGGACCTCGGGGCCGCCCTGCGGTCTGTGATTGGTTCTCGAGTGCAATGCTCCGCCCTGGGGCGGGGCTGGAGGGACCAAAGGCTACGTGCGCGCCTTGCGCTTCCCCCAGCTCCTCTGACTGGGGCGTCCGACTGGAGCTCAGCCGCGCTTGTCCGGTGCTAGGTCATCCTGCCAAACACCCGAGGCCCCAAAGATGGTGCAAAGTGAACTTC
.........................................................................................................................................................................................................................................................................((((..((((.(((((.((.((......)).)).))).)))))).))))...............................................
.........................................................................................................................................................................................................................................................................266................................................317..........................................
SizePerfect hitTotal NormPerfect NormSRR040037(GSM532922)
G243T. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR040041(GSM532926)
G612T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR040017(GSM532902)
G645T. (cervix)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)		SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532887(GSM532887)
G761N. (cervix)		GSM379268(GSM379268)
Small RNA from serous ovarian cancer tissue. (ovary)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR040027(GSM532912)
G220T. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
............................................................GGGCGGGGACGGGCGCCTTG......................................................................................................................................................................................................................................................................................... 208.000.007.00------------------1.00---------------------------------------------------------------------------------------------------
............................................................GGGCGGGGACGGGCGCCT........................................................................................................................................................................................................................................................................................... 186.000.004.00------------------1.00-------------------------------------------------1.00-------------------------------------------------
...........................................................CGCCCGTCCCCGCCCT.............................................................................................................................................................................................................................................................................................. 1635.335.33-----0.33-1.00-------0.330.33---------------0.33-------0.33--------------------------------------------------------------0.330.67---0.330.330.33-0.330.33-----
........................................................CCCGTCCCCGCCCTTGC................................................................................................................................................................................................................................................................................................ 1713.003.00-----1.00--------------------------------------------------------------------1.00---------1.00----------------------------------
............................................CCTTGCGCTCACCTCGGC........................................................................................................................................................................................................................................................................................................... 1813.003.00---------3.00-------------------------------------------------------------------------------------------------------------
............................................................GGGCGGGGACGGGCGA............................................................................................................................................................................................................................................................................................. 163.000.00----------------------1.00--------------1.00--1.00------------------------------------------------------------------------------
..........................................................AAGGGCGGGGACGGGCGTGCC.......................................................................................................................................................................................................................................................................................... 213.000.00-------------1.00----------1.00------------------------------------------------1.00---------------------------------------------
............................................................GGGCGGGGACGGGCGCCTT.......................................................................................................................................................................................................................................................................................... 193.000.003.00----------------------------------------------------------------------------------------------------------------------
..........................................................AAGGGCGGGGACGGGCGTGC........................................................................................................................................................................................................................................................................................... 202.000.00-------1.00----------------------------------1.00----------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................AGGAGCTGGGGGAAGCGC.................................................................................................. 1812.002.00----------2.00------------------------------------------------------------------------------------------------------------
..........................................................AAGGGCGGGGACGGGCTGC............................................................................................................................................................................................................................................................................................ 192.000.00------------------------1.00----------------------------1.00-----------------------------------------------------------------
............................................................GGGCGGGGACGGGCGAT............................................................................................................................................................................................................................................................................................ 172.000.00-------1.00------------------------------------------------------------------------------1.00--------------------------------
...........................CGGCGGCGCGCACAGCGCGGC......................................................................................................................................................................................................................................................................................................................... 2112.002.00---------------------------------------------------------------1.00----1.00--------------------------------------------------
...................GCGCGCACAGCGCGGCCTCCGCGC.............................................................................................................................................................................................................................................................................................................................. 2411.001.00------------------------------------------------------------1.00----------------------------------------------------------
.......................................................................GGCGCCGGTGGGCGGGTGCT.............................................................................................................................................................................................................................................................................. 201.000.00-------------1.00---------------------------------------------------------------------------------------------------------
............................................................GGGCGGGGACGGGCGCCC........................................................................................................................................................................................................................................................................................... 181.000.00-------------------------1.00---------------------------------------------------------------------------------------------
.......................................................CGCAAGGGCGGGGACGGGGA.............................................................................................................................................................................................................................................................................................. 201.000.00----------------------------------------------------------------------------------1.00------------------------------------
..........................................................AAGGGCGGGGACGGGTGCC............................................................................................................................................................................................................................................................................................ 191.000.00-------------------------1.00---------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GGGCGGGGCTGGAGGGAG......................................................................................................................................... 181.000.00-----1.00-----------------------------------------------------------------------------------------------------------------
..............................................................GCGGGGACGGGCGCCGGG......................................................................................................................................................................................................................................................................................... 181.000.00-------------1.00---------------------------------------------------------------------------------------------------------
..........................................................AAGGGCGGGGACGGGTG.............................................................................................................................................................................................................................................................................................. 171.000.00----------------------------------------------------------------------------1.00------------------------------------------
..............................................................GGCGCCCGTCCCCGC............................................................................................................................................................................................................................................................................................ 1511.001.00----------------------------------1.00------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................CTTCCCCCAGCTCCTCTGGGG............................................................................................ 211.000.00------------1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................GCTAGGTCATCCTGCCGGTC................................... 201.000.00--------------------------------------------------------1.00--------------------------------------------------------------
........................................................GCAAGGGCGGGGACGGGCGCTCT.......................................................................................................................................................................................................................................................................................... 231.000.00----------------------1.00------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................GGAGCTCAGCCGCGCTTCT............................................................ 191.000.00-------------------------------------------------------------------1.00---------------------------------------------------
..........................................................AAGGGCGGGGACGGGTTC............................................................................................................................................................................................................................................................................................. 181.000.00--------------------------------------------------1.00--------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................GCTAGGTCATCCTGCCGT..................................... 181.000.00-----------------------------1.00-----------------------------------------------------------------------------------------
.................................................................................................AGCCGGAGACGCCGGGGTCGCACTG............................................................................................................................................................................................................................................... 2511.001.00--------1.00--------------------------------------------------------------------------------------------------------------
............................................GCCGAGGTGAGCGCATGC........................................................................................................................................................................................................................................................................................................... 181.000.00------------1.00----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................CTAGGTCATCCTGCCTATA................................... 191.000.00-----------1.00-----------------------------------------------------------------------------------------------------------
........................................................GCAAGGGCGGGGACGGGCTCT............................................................................................................................................................................................................................................................................................ 211.000.00-----1.00-----------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................GCTAGGTCATCCTGCCGGT.................................... 191.000.00------------------------------------------------------------------------------------------------------1.00----------------
.................................................................................................................................................................................................................................................................................CGTCCGACTGGAGCTATT...................................................................... 181.000.00----------------------------------------------------------------1.00------------------------------------------------------
...................................................................CCGCCCACCGGCGCCCGTC................................................................................................................................................................................................................................................................................... 1911.001.00---------------------------------1.00-------------------------------------------------------------------------------------
............................................................GGGCGGGGACGGGCGCAT........................................................................................................................................................................................................................................................................................... 181.000.001.00----------------------------------------------------------------------------------------------------------------------
............................................................GGGCGGGGACGGGCGGGGC.......................................................................................................................................................................................................................................................................................... 191.000.00-------------------------------------------------------------1.00---------------------------------------------------------
..........................................................AAGGGCGGGGACGGGTGC............................................................................................................................................................................................................................................................................................. 181.000.00----------------1.00------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................GCGTCCGACTGGAGCTC........................................................................ 171.000.00--------------------------1.00--------------------------------------------------------------------------------------------
...........................................................GCCCGTCCCCGCCCT............................................................................................................................................................................................................................................................................................... 1550.800.80-------0.20---------0.20-------------------------------------------------------------------------------------------------0.200.20--
........................................................GCAAGGGCGGGGACGGCT............................................................................................................................................................................................................................................................................................... 180.500.00-------------------------------------0.50---------------------------------------------------------------------------------
........................................................CCGTCCCCGCCCTTGC................................................................................................................................................................................................................................................................................................. 1620.500.50--------------------------------0.50--------------------------------------------------------------------------------------
...............................................................................................................................................................................ACTCGAGAACCAATC........................................................................................................................................................................... 1520.500.50-----------------------------------------------------------------------------------------------0.50-----------------------
........................................................................................................GCCGGAGACGCCGGGGT................................................................................................................................................................................................................................................ 1720.500.50---------------------------------0.50-------------------------------------------------------------------------------------
...............................................................CGGCGCCCGTCCCCG........................................................................................................................................................................................................................................................................................... 1520.500.50-----------------------------------------------0.50-----------------------------------------------------------------------
...........................................................AGGGCGGGGACGGGCGCGGC.......................................................................................................................................................................................................................................................................................... 200.330.00---------------------------------------------------------------------------------------------------------------0.33-------
.............................................................GCGCCCGTCCCCGCC............................................................................................................................................................................................................................................................................................. 1530.330.33-------------------------------------------------------------------------------------------------------0.33---------------
........................................................CGTCCCCGCCCTTGC.................................................................................................................................................................................................................................................................................................. 1540.250.25------------------------------------------------------------------------------------------------------------------0.25----