ID: uc010oem.1_intron_8_0_chr1_24987888_f.3p
GENE: SRRM1(9)
chr1:24988951-24989200+


(3)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(10)
CELL-LINE 		(5)
HELA 		(4)
LIVER 		(3)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
ATTATTTCTATGTCTTATTTAAATAATATGCTTGGCTTTGAAATCATTGATCATATATTGATAATGATTCTGTTCAGAACTGATGGCCTGTATACATGCTTGCTTACCCTAGTGAACACTCCATCCACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAGACTCTGGCTCCTCCTCCTCCTCAGAAGATGAACGACCCAAGAGATCCCAT
......................................................................(((((((..((((.(((..(((....)))..)))....((((((...........))).)))...)))).....)))))))...................................................................................................
......................................................................71......................................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................CATCCACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAGT.................................................8019.001.009.00--------------------------------
..........................................................................................................................ATCCACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATA...................................................7715.005.005.00--------------------------------
..........................................................................................................................ATCCACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATA.........................................................................5515.005.005.00--------------------------------
..............................................................................................................................ACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAG..................................................7414.004.00-4.00-------------------------------
.............................................................................................................................CACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATA......................................................713.000.003.00--------------------------------
............................................................................................................................CCACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAG..................................................7613.003.003.00--------------------------------
...........................................................................AGAACTGATGGCCTGTA..............................................................................................................................................................1712.002.00---------2.00-----------------------
..............................................................................................................................ACCTAGATTTCAGAAAACTTGGACAGA.................................................................................................2712.002.00------------------1.001.00-------------
..........................................................................................................................................................TCAAGCACAAACCTATT...............................................................................172.000.00------2.00--------------------------
.............................................................................................................................CACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAG..................................................7512.002.00-2.00-------------------------------
...........................................................................AGAACTGATGGCCTGTATACATG........................................................................................................................................................2312.002.00--2.00------------------------------
......................................................................................................................................................................................................................TCCTCCTCAGAAGATGAACGACCC............2412.002.00--------2.00------------------------
..........................................................................................................................................................................................................TCTGGCTCCTCCTCCTCCTCAGAAGA......................2611.001.00---------------1.00-----------------
...............................................................ATGATTCTGTTCAGAACTGATGGCC..................................................................................................................................................................2511.001.00-----1.00---------------------------
........................................................................................................................................................................................................ACTCTGGCTCCTCCTCCTCCTCAGAAGATG....................3011.001.00----------------------1.00----------
.........................................................................................................................CATCCACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAG..................................................7911.001.00-------------------------1.00-------
.......................................................................................................................................TCAGAAAACTTGGACAGATTCAAGCA.........................................................................................2611.001.00----------1.00----------------------
...............................................................................................................................................................................................................................GAAGATGAACGACCCAAGAGATCC...2421.001.00--1.00------------------------------
............................................................................................................................................................................................TTGTAATTATAGACTCTGGC..........................................2011.001.00------------------------1.00--------
...........................................................................AGAACTGATGGCCTGTATACATGCT......................................................................................................................................................2511.001.00-----1.00---------------------------
..........................................................................................................................ATCCACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAGTT................................................801.000.001.00--------------------------------
.................................................................................................................................TAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAG..................................................7111.001.001.00--------------------------------
.............................................................................................................................................AACTTGGACAGATTCAAGC..........................................................................................1911.001.00--------------------------1.00------
......................................................................................................................................................................................................................................AACGACCCAAGAGATCCCAGGTG231.000.00---------------------1.00-----------
.......................................................................................................................................................................TAATGTAATATTTTTTATAG...............................................................201.000.00----1.00----------------------------
...............................................................................................................................CCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAG..................................................7311.001.00-1.00-------------------------------
.....................................................................CTGTTCAGAACTGATGGCCTGTA..............................................................................................................................................................2311.001.00-------------1.00-------------------
...................................................................................................................................................................................................................TCCTCCTCCTCAGAAGATGAACGACC.............2611.001.00--1.00------------------------------
........................................................................................TGTATACATGCTTGCAAGA...............................................................................................................................................191.000.00----1.00----------------------------
..................................................................ATTCTGTTCAGAACTGATGGC...................................................................................................................................................................2111.001.00-----------1.00---------------------
..........................................................................................................................................................................................................................CCTCAGAAGATGAACGACCCA...........2121.001.00-----0.50----------------------0.50----
.......................................................................................................................................................................................................................CCTCCTCAGAAGATGAACGACCCA...........2411.001.00-----------------------1.00---------
................................................................................................................................CTAGATTTCAGAAAACTTGGACAGATTCAAGC..........................................................................................3211.001.00----------------1.00----------------
..TATTTCTATGTCTTAACG......................................................................................................................................................................................................................................181.000.00----1.00----------------------------
.........................................................................................................................................................................................................................TCCTCAGAAGATGAACGACCCA...........2220.500.50--0.50------------------------------
.................................................................................................................................................................................................................................AGATGAACGACCCAAGAG.......1820.500.50--0.50------------------------------
..........................................................................................................................................................................................................................CCTCAGAAGATGAACGACCCAAGA........2420.500.50---------------------------0.50-----
...............................................................................................................................................................................................................................GAAGATGAACGACCCAAGAG.......2020.500.50-----------------------------0.50---
................................................................................................................................................................................................................................AAGATGAACGACCCAAGAGATCCC..2420.500.50----------0.50----------------------
...............................................................................................................................................................................................................................GAAGATGAACGACCCAAGAGATCCCA.2620.500.50--0.50------------------------------
.............................................................................................................................................................................................................................CAGAAGATGAACGACCCAAGAGAT.....2420.500.50--0.50------------------------------
...............................................................................................................................................................................................................................GAAGATGAACGACCCAAGAGAT.....2220.500.50-----0.50---------------------------
..........................................................................................................................................................................................................................CCTCAGAAGATGAACGACCCAAGAGA......2620.500.50------------------------------0.50--
.......................................................................................................................................................................................................GACTCTGGCTCCTCCTCC.................................1830.330.33--0.33------------------------------
............................................................................................................................................................................................................................TCAGAAGATGAACGACC.............1730.330.33-------------------------------0.33-
...................................................................................................................................................................................................TATAGACTCTGGCTC........................................1550.200.20--------------------------------0.20

Antisense strand
ATTATTTCTATGTCTTATTTAAATAATATGCTTGGCTTTGAAATCATTGATCATATATTGATAATGATTCTGTTCAGAACTGATGGCCTGTATACATGCTTGCTTACCCTAGTGAACACTCCATCCACCTAGATTTCAGAAAACTTGGACAGATTCAAGCACAAACCTAATGTAATATTTTTTTAATTTTGTAATTATAGACTCTGGCTCCTCCTCCTCCTCAGAAGATGAACGACCCAAGAGATCCCAT
......................................................................(((((((..((((.(((..(((....)))..)))....((((((...........))).)))...)))).....)))))))...................................................................................................
......................................................................71......................................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343334SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191394(GSM715504)
23genomic small RNA (size selected RNA from t. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.TTATTTCTATGTCTTCCTG...................................................................................................................................................................................................................................... 199.000.00---6.00---2.00----1.00--------------------
..............................................................................................................................................................................................................GCTCCTCCTCCTCCTCAT.......................... 181.000.00--------------------1.00------------
..............................................................................................................................................................................................................GCTCCTCCTCCTCCTCAACA........................ 201.000.00-----------------1.00---------------
.................................................................................GATGGCCTGTATACAGACA...................................................................................................................................................... 191.000.00--------------1.00------------------