ID: uc010nvf.2_intron_3_0_chrX_153994274_f
GENE: (4)
chrX:153994224-153994540+


(1)
AGO1.ip 		(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(14)
CELL-LINE 		(12)
CERVIX 		(1)
HEART 		(2)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(2)
OTHER 		(4)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CTTGCATGTGGTTCAAATCCTCTGAAGAGAGAGATTGGGGACTATATCAGGTAAGTGTTGGGAGGAGGCACTGTGCAAACTTACTTTCTTTTGAAAATGCTTTCACATCAGCTATTCAGGAAGGCAGTGGCATGCCAGAATAGCTTTGTCTTGAATATATAACCTGTACCCGCAGTGAATTATTTTTCTTTTTAACTTTTCAGATTTGTTGTTTCACTGGAGCATTAAGAGTGGGTGATACATTAATTTTTTTTTTTTCCATTCCAGGACAGGTTTCATTAATCTTGACAAGCCCTCTAACCCCTCTTCCCATGAGG
..................................................(((....((..(((((((....((....))...)))))))..))...)))....(((..((((((((.((...((....))...)).)))))))).)))........................................................................................................................................................................
..................................................51.................................................................................................150.....................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR040018(GSM532903)
G701N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040006(GSM532891)
G601N. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		TAX577580(Rovira)
total RNA. (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................TGGGAGGAGGCACTGTAGCT...............................................................................................................................................................................................................................................2012.000.00-3.003.00--1.00----1.00--1.00--1.00-------------------------1.00--1.00----
..........................................................TGGGAGGAGGCACTGTTGCT...............................................................................................................................................................................................................................................207.000.00-1.002.00-------1.00---1.00------------------1.00----1.00-----------
..........................................................TGGGAGGAGGCACTGTGGCT...............................................................................................................................................................................................................................................205.000.00-3.00----------1.00-1.00-----------------------------------
.................................ATTGGGGACTATATCAGGTAAGT.....................................................................................................................................................................................................................................................................2315.005.00-------5.00------------------------------------------
..........................................................TGGGAGGAGGCACTGTAGCG...............................................................................................................................................................................................................................................203.000.00--2.00--1.00--------------------------------------------
..................................................................................................................................................................................................................................................................................TTCATTAATCTTGACAAGCCCT.....................2213.003.00-----------3.00--------------------------------------
.......................GAAGAGAGAGATTGGGGACTA.................................................................................................................................................................................................................................................................................2113.003.00------3.00-------------------------------------------
....................................GGGGACTATATCAGGACAG......................................................................................................................................................................................................................................................................192.000.00---2.00----------------------------------------------
..........................................................TGGGAGGAGGCACTGTAG.................................................................................................................................................................................................................................................182.000.00--1.00------------1.00----------------------------------
..........................................................TGGGAGGAGGCACTGTGGCTC..............................................................................................................................................................................................................................................212.000.00---------------1.00-----------------------1.00----------
.......................GAAGAGAGAGATTGGGGACTATATCAGGAC........................................................................................................................................................................................................................................................................3012.001.00---------2.00----------------------------------------
.....................CTGAAGAGAGAGATTGGGGACTATATCAG...........................................................................................................................................................................................................................................................................2912.002.00---2.00----------------------------------------------
..........................................................TGGGAGGAGGCACTGTCG.................................................................................................................................................................................................................................................182.000.00-----1.00-------1.00------------------------------------
..........................................................TGGGAGGAGGCACTGTGGC................................................................................................................................................................................................................................................191.000.00-----1.00--------------------------------------------
..................................................................................................................................................................................................................................................TTAATTTTTTTTTTTTCCAGTT.....................................................221.000.00-----------------1.00--------------------------------
.............................................................................AACTTACTTTCTTTTCTTG.............................................................................................................................................................................................................................191.000.00----1.00---------------------------------------------
...............................................................................................................................................................................................................................................ACATTAATTTTTTTTTTTCG..........................................................201.000.00----1.00---------------------------------------------
..........................................................TGGGAGGAGGCACTGTCGCT...............................................................................................................................................................................................................................................201.000.00--1.00-----------------------------------------------
...............................................................................................................................................................................................................................................ACATTAATTTTTTTTTTCTTG.........................................................211.000.00----1.00---------------------------------------------
................................................................................................................................................................................................................................................CATTAATTTTTTTTTTTTCTTG.......................................................221.000.00----1.00---------------------------------------------
..........................................................TGGGAGGAGGCACTGTTA.................................................................................................................................................................................................................................................181.000.00----------1.00---------------------------------------
...............................................................................................................................................................................................................................................ACATTAATTTTTTTTTTTTAAAG.......................................................231.000.00--------------------------------------------1.00-----
.......................GAAGAGAGAGATTGGGGACTATATCAGG..........................................................................................................................................................................................................................................................................2811.001.00-----------------------------1.00--------------------
...............................................CAGGTAAGTGTTGGGAGGAGGCAC......................................................................................................................................................................................................................................................2411.001.00-------------------------1.00------------------------
..........................................................TGGGAGGAGGCACTGTAGCA...............................................................................................................................................................................................................................................201.000.00-----1.00--------------------------------------------
.....................CTGAAGAGAGAGATTGGGGACTA.................................................................................................................................................................................................................................................................................2311.001.00-------------------1.00------------------------------
..............AAATCCTCTGAAGAGAGAGATTGGGGAC...................................................................................................................................................................................................................................................................................2811.001.00--------1.00-----------------------------------------
.................................................................................................................................................................................................................................................ATTAATTTTTTTTTTTTCTCAG......................................................221.000.00--------------------1.00-----------------------------
...........................AGAGAGATTGGGGACTATATCAGGAC........................................................................................................................................................................................................................................................................261.000.00--------------------------------1.00-----------------
.....................................................................................................................................................................................ATTTTTCTTTTTAACTTTTTTT..................................................................................................................221.000.00----1.00---------------------------------------------
.....................CTGAAGAGAGAGATTGGGGACTAAAT..............................................................................................................................................................................................................................................................................2611.001.00---------------------------1.00----------------------
..........................................................TGGGAGGAGGCACTGTGGCGC..............................................................................................................................................................................................................................................211.000.00-1.00------------------------------------------------
..........................................................TGGGAGGAGGCACTGTGGCG...............................................................................................................................................................................................................................................201.000.00-1.00------------------------------------------------
...............AATCCTCTGAAGAGAGAGATTGGGGACC..................................................................................................................................................................................................................................................................................281.000.00--------1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................AGGACAGGTTTCATTAATCT................................2011.001.00----------------------------------------------1.00---
.........................AGAGAGAGATTGGGGACTATATCAG...........................................................................................................................................................................................................................................................................2511.001.00---------1.00----------------------------------------
..........................................................TGGGAGGAGGCACTGTTGTT...............................................................................................................................................................................................................................................201.000.00------------------------------------1.00-------------
.........................................................................................................................................................................................................................................................TTTTTTTTTCCATTCGGAC.................................................191.000.00--------1.00-----------------------------------------
..........................................................TGGGAGGAGGCACTGTACTT...............................................................................................................................................................................................................................................201.000.00----------------1.00---------------------------------
.....................CTGAAGAGAGAGATTGGGGAC...................................................................................................................................................................................................................................................................................2111.001.00------1.00-------------------------------------------
.........................................................................................................................................................................................................AGATTTGTTGTTTCACTGGAGCATT...........................................................................................2511.001.00------------------1.00-------------------------------
..........................................................TGGGAGGAGGCACTGTAGGT...............................................................................................................................................................................................................................................201.000.00-1.00------------------------------------------------
..............................................................................................................................................................................................................................................TACATTAATTTTTTTTTTTTCCATTCCAG..................................................2911.001.00-----------------------1.00--------------------------
................................GATTGGGGACTATATCAGGAC........................................................................................................................................................................................................................................................................211.000.00----------------------------1.00---------------------
..........................................................TGGGAGGAGGCACTGTAA.................................................................................................................................................................................................................................................181.000.00-----1.00--------------------------------------------
.....................CTGAAGAGAGAGATTGGG......................................................................................................................................................................................................................................................................................1811.001.00---1.00----------------------------------------------
........................................................................................................................................................................................................................................................TTTTTTTTTTCCATTCGGG..................................................191.000.00----------------------------------------1.00---------
..........................................................TGGGAGGAGGCACTGTGCCTCT.............................................................................................................................................................................................................................................221.000.00--1.00-----------------------------------------------
.....................................................................................................................AGGAAGGCAGTGGCAGGGG.....................................................................................................................................................................................191.000.00--------1.00-----------------------------------------
....................................................................................................................................................................................................................................GAGTGGGTGATACATTGCTG.....................................................................201.000.00------------1.00-------------------------------------
......................TGAAGAGAGAGATTGGGGA....................................................................................................................................................................................................................................................................................1911.001.00---1.00----------------------------------------------
..........................................................TGGGAGGAGGCACTGCAGC................................................................................................................................................................................................................................................191.000.00------------1.00-------------------------------------
............................GAGAGATTGGGGACTATT...............................................................................................................................................................................................................................................................................181.000.00-------------------------------1.00------------------
.................................................................................................................................................................................................................................................ATTAATTTTTTTTTTTCAAG........................................................201.000.00----1.00---------------------------------------------
............................GAGAGATTGGGGACTATAT..............................................................................................................................................................................................................................................................................1911.001.00------------------------------1.00-------------------
...................................................................................................................................................................................................................................................................................TCATTAATCTTGACAAGCC.......................1911.001.00----------------------------------1.00---------------
......................................................................................................................................................................................................................................................TTTTTTTTTTTTCCATTCCGTT.................................................221.000.00-----------------1.00--------------------------------
.......................GAAGAGAGAGATTGGGGACTAT................................................................................................................................................................................................................................................................................2211.001.00---------------------1.00----------------------------
.....................CTGAAGAGAGAGATTGGGGACT..................................................................................................................................................................................................................................................................................2211.001.00--------------------------1.00-----------------------
..........................................................TGGGAGGAGGCACTGTGGCTA..............................................................................................................................................................................................................................................211.000.00----------------------1.00---------------------------
.....ATGTGGTTCAAATCCTCTGAAGAGAGAGAT..........................................................................................................................................................................................................................................................................................3011.001.00-----------------------------------------1.00--------
.........................AGAGAGAGATTGGGGACTATA...............................................................................................................................................................................................................................................................................2111.001.00------1.00-------------------------------------------
...........................AGAGAGATTGGGGACTATATCA............................................................................................................................................................................................................................................................................2211.001.00-------------------------------------1.00------------
..............................................................................ACTTACTTTCTTTTGAAA.............................................................................................................................................................................................................................1820.500.50------------------0.50-------------------------------
.....................................................................................................................................................................................................................................................ATTTTTTTTTTTTCCATTC.....................................................1950.400.40----0.20--------------------------------------------0.20

Antisense strand
CTTGCATGTGGTTCAAATCCTCTGAAGAGAGAGATTGGGGACTATATCAGGTAAGTGTTGGGAGGAGGCACTGTGCAAACTTACTTTCTTTTGAAAATGCTTTCACATCAGCTATTCAGGAAGGCAGTGGCATGCCAGAATAGCTTTGTCTTGAATATATAACCTGTACCCGCAGTGAATTATTTTTCTTTTTAACTTTTCAGATTTGTTGTTTCACTGGAGCATTAAGAGTGGGTGATACATTAATTTTTTTTTTTTCCATTCCAGGACAGGTTTCATTAATCTTGACAAGCCCTCTAACCCCTCTTCCCATGAGG
..................................................(((....((..(((((((....((....))...)))))))..))...)))....(((..((((((((.((...((....))...)).)))))))).)))........................................................................................................................................................................
..................................................51.................................................................................................150.....................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR040018(GSM532903)
G701N. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR040016(GSM532901)
G645N. (cervix)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040006(GSM532891)
G601N. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		TAX577580(Rovira)
total RNA. (breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191632(GSM715742)
78genomic small RNA (size selected RNA from t. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........TGGTTCAAATCCTCTTC.................................................................................................................................................................................................................................................................................................... 1732.000.0032.00-------------------------------------------------
................................................................GAGGCACTGTGCAAAGATG.......................................................................................................................................................................................................................................... 191.000.00-----------------------------------1.00--------------
....................................................................................................................................................................................................................................................................................................CCCTCTAACCCCTCTTGGAG..... 201.000.00------------------------1.00-------------------------
...............................................................................................................................................................................................................................................................................................ACAAGCCCTCTAACCGGCC........... 191.000.00---1.00----------------------------------------------
.......................................................................................................................................................................................................................................................TTTTTTTTTTTCCATTCCATAT................................................ 221.000.00-------------------------------------------1.00------
.........TTCAGAGGATTTGAACC................................................................................................................................................................................................................................................................................................... 1720.500.50-----------------------------------------------0.50--
.....AGAGGATTTGAACCACAT...................................................................................................................................................................................................................................................................................................... 1820.500.50------------------------------------------------0.50-