ID: uc010lhl.1_intron_17_0_chr7_100485765_f
GENE: SRRT(18)
chr7:100485715-100485927+


(1)
AGO2.ip
(7)
B-CELL
(2)
BRAIN
(4)
BREAST
(17)
CELL-LINE
(1)
FIBROBLAST
(2)
HELA
(1)
KIDNEY
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(14)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GGGCCTGATGCCCTATGGTCAGCCCCGGCCCCCGATCTTGGGCTATGGAGGTAAGTACAGGAGGGAGATGAAGGGGCTTGGTGAGTGTGTGGCTTTGGGAGAAGAAAACAGAGGATGGAATTGAGGACATAGTTTTGCAACTCAACACTGATCTCTGTCATAGCTGGTGCTGTCCGCCCTGCAGTCCCCACAGGAGGCCCTCCATACCCCCAT
...........................................................................................................(((((((.(((..(((((..((......))...)))))..))).))))))).......................................................
..........................................................................................................107.....................................................163................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................AACACTGATCTCTGTCATAGA.................................................21116.009.002.005.00--1.00----1.00-2.00----1.00-----1.00------1.00-1.00---------------1.00-------
...............................................................................................................................................AACACTGATCTCTGTCATAG..................................................2019.009.00-------1.00-1.00------1.001.00-----------------1.00-----1.00---1.00--1.001.00-----
..............................................................................................................................................CAACACTGATCTCTGTCATAGAA................................................2315.004.00-2.00--2.00-------------------------------------------------1.00
..............................................................................................................................................CAACACTGATCTCTGTCATAG..................................................2114.004.00-----------------1.00--------1.00-----------1.00-----1.00----------
..............................................................................................................................................CAACACTGATCTCTGTCATAGA.................................................2214.004.00-1.00-----1.00------------------------1.00-----------------1.00----
.................................GATCTTGGGCTATGGAG...................................................................................................................................................................1713.003.003.00------------------------------------------------------
...............................................................................................................................................AACACTGATCTCTGTCATAGT.................................................2113.009.00---2.00------------------------------1.00--------------------
..........................................................................................................AACAGAGGATGGAATTGAG........................................................................................1912.002.00------2.00------------------------------------------------
...............................................................................................................AGGATGGAATTGAGGTAGG...................................................................................192.000.00--------2.00----------------------------------------------
......................................................................................................................AATTGAGGACATAGTTTTGCAACTCAAC...................................................................2812.002.00--------------2.00----------------------------------------
..............................................................................................................................................CAACACTGATCTCTGTCATAGAT................................................2312.004.002.00------------------------------------------------------
..........................................................................................................................................AACTCAACACTGATCTCTGTCATA...................................................2411.001.00-------------------------------------1.00-----------------
...................................................................................................AGAAGAAAACAGAGGATG................................................................................................1821.001.00-----0.50-------------0.50-----------------------------------
.................................................................................TGAGTGTGTGGCTTTGGGAGAAGAAAAC........................................................................................................2811.001.00------------------------------------------1.00------------
.............................................................AGGGAGATGAAGGGGATAG.....................................................................................................................................191.000.00----------------------------------------------------1.00--
.................................................................................................................GATGGAATTGAGGACATAGGGGT.............................................................................231.000.001.00------------------------------------------------------
........................................................................................................AAAACAGAGGATGGACA............................................................................................171.000.00--1.00----------------------------------------------------
.............................................................................................................AGAGGATGGAATTGAGGACATAGTT...............................................................................2511.001.00----------------------------------------------1.00--------
.......................................................................................TGTGGCTTTGGGAGAAGTCAT.........................................................................................................211.000.00---------------------1.00---------------------------------
...............................................................................................................................................AACACTGATCTCTGTCATAGCTG...............................................2311.001.00------------------------1.00------------------------------
......................................................................................................AGAAAACAGAGGATGAGCA............................................................................................191.000.00-----1.00-------------------------------------------------
...............................CCGATCTTGGGCTATGGAG...................................................................................................................................................................1911.001.00---------------------------1.00---------------------------
..................TCAGCCCCGGCCCCCGATC................................................................................................................................................................................1911.001.00----------------------------1.00--------------------------
.....................................................................................................AAGAAAACAGAGGATGAACT............................................................................................201.000.00-----1.00-------------------------------------------------
..............................................................................................................................................CAACACTGATCTCTGTCATAT..................................................211.000.00----------------------------------------1.00--------------
.......................................................TACAGGAGGGAGATGAATGAA.........................................................................................................................................211.000.00--1.00----------------------------------------------------
...................................................................................AGTGTGTGGCTTTGGGAGAAGAAAACAGAA....................................................................................................301.000.00---------------1.00---------------------------------------
...............................................................................................................................................AACACTGATCTCTGTCATATT.................................................211.000.00---1.00---------------------------------------------------
.............................................................................................................AGAGGATGGAATTGAGGACATAGTTT..............................................................................2611.001.00-----------------------------------------------------1.00-
.....................................................................................................AAGAAAACAGAGGATGACCA............................................................................................201.000.00------------------------------1.00------------------------
..................................................GTAAGTACAGGAGGGAGATGAAG............................................................................................................................................2311.001.00----------1.00--------------------------------------------
........................................................................GGGGCTTGGTGAGTGTGTGGCTT......................................................................................................................2311.001.00-------------------------1.00-----------------------------
.............................................................................................................AGAGGATGGAATTGAGGA......................................................................................1820.500.50------------------0.50------------------------------------
...........CCTATGGTCAGCCCC...........................................................................................................................................................................................1570.140.14--------------------0.14----------------------------------

Antisense strand
GGGCCTGATGCCCTATGGTCAGCCCCGGCCCCCGATCTTGGGCTATGGAGGTAAGTACAGGAGGGAGATGAAGGGGCTTGGTGAGTGTGTGGCTTTGGGAGAAGAAAACAGAGGATGGAATTGAGGACATAGTTTTGCAACTCAACACTGATCTCTGTCATAGCTGGTGCTGTCCGCCCTGCAGTCCCCACAGGAGGCCCTCCATACCCCCAT
...........................................................................................................(((((((.(((..(((((..((......))...)))))..))).))))))).......................................................
..........................................................................................................107.....................................................163................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029128(GSM416757)
H520. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)
SRR029127(GSM416756)
A549. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191475(GSM715585)
18genomic small RNA (size selected RNA from t. (breast)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038859(GSM458542)
MM386. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
...........................GCCCAAGATCGGGGGC.......................................................................................................................................................................... 1612.002.00-------------2.00-----------------------------------------
...................................................................................................................................................CTGATCTCTGTCATAGCTGGTGCTGTCCGCCG.................................. 321.000.00------------1.00------------------------------------------
..................................................................................................................................................................GCTGGTGCTGTCCGCCCTGCAGTCCCCACATG................... 321.000.00---------------------------------------1.00---------------
................................................................................................................................................................ACTGCAGGGCGGACAGCACCAGCTA............................ 2511.001.00-------------------1.00-----------------------------------
................................................................................................................................................................GGGCGGACAGCACCAGCTA.................................. 1911.001.00----------1.00--------------------------------------------
............................................................................................................................................................................TCCGCCCTGCAGTCCCT........................ 171.000.00--1.00----------------------------------------------------
...............................TACTTACCTCCATAGCCCAAGATCGG............................................................................................................................................................ 2611.001.00---------------1.00---------------------------------------
.................................................................................................................................................GCGGACAGCACCAGCTATGACAGAGATCAGTG.................................... 3211.001.00------------1.00------------------------------------------
.....................TAGCCCAAGATCGGGGGCCGGGGC........................................................................................................................................................................ 2411.001.00-----------------------1.00-------------------------------
..................TCAGCCCCGGCCCCCAAG................................................................................................................................................................................. 181.000.00------------------------------------1.00------------------
.......................................................................................................................................................................TCCTGTGGGGACTGCAGGGCGGACAGCA.................. 2811.001.00-------------------------------------------1.00-----------
......GCCGGGGCTGACCATAGGGCATC........................................................................................................................................................................................ 2311.001.00------------------1.00------------------------------------
.........................................................CAGGAGGGAGATGAAGATG......................................................................................................................................... 191.000.00---------------------------------------------------1.00---
.........GCCGGGGCTGACCATAGGGC........................................................................................................................................................................................ 2011.001.00---------------------------------1.00---------------------
.............................................................................................................................................................................CCGCCCTGCAGTCCCGGCG..................... 191.000.00--------------------1.00----------------------------------
...............CAAGATCGGGGGCCGGGGCTGACCA............................................................................................................................................................................. 2511.001.001.00------------------------------------------------------