ID: uc010jra.2_intron_6_0_chr6_28323452_r
GENE: (1)
chr6:28323402-28323872-


(1)
AGO2.ip 		(4)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(15)
LIVER 		(1)
OTHER 		(10)
SKIN 		(1)
XRN.ip

Sense strand
CTGAATAAGTTTCCGGGCAGAGCTGCATTTATTGACGGTTATGAAAGCTGGTCAGTGAAAGTGAAACCTGTATCTTTGGACCTCGGCATCGGCCGCTTAGCTCCCTGCTTATGCACTGTGGATGTCTCTCCCATGCCTGAGGACAGGCTGTGGGTGGATGTTTTGCACGGCTTGGCAGCTGTGCCGTCTATCATGGATTTGATAGGCCACTTGACAACAGAACTGGGATGGTGCCACTGTGTGGTGGACTTGGCCAATGCATTCCTCTTAATCGACATTGCTCCAGAGAGCCAGGAACACTTTGCCTTCGTGGGAGGGTGACAATGGACTTTCACAGTATTGCTGCAGGGATATATGCATAGCCCCAACATATGTCATGATCTTATTAATGATGTTATATTAACCTCTGATTCTCTTGCAGATTTAGAAGCAGCAACGCAGCCTCTTGCCTGGAATTGGGATGATGCGGCT
.............................................................................................................................................................................................................................................................................................((((((((....((((((.((.....)).))))))....))).)))))..........................................................................................................................................
....................................................................................................................................................................................................................................................................261.......................................................................335......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGTGTT............................................................................................................................................1949.000.008.0014.001.005.005.006.003.002.00-5.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGTGTT............................................................................................................................................2024.000.007.002.002.003.002.001.002.001.001.00-1.001.00-------------1.00-------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGTGT.............................................................................................................................................1823.000.002.004.001.006.003.001.00-4.00-2.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGTGGT............................................................................................................................................2013.000.003.00-4.001.00-2.002.00-----1.00--------------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGGGTT............................................................................................................................................1911.000.002.00-4.001.002.001.00-1.00-------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGTGT.............................................................................................................................................1910.000.003.00-1.001.00-2.001.00----2.00---------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGGGTT............................................................................................................................................209.000.00--------7.00-2.00----------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGTGG.............................................................................................................................................198.000.002.00-5.00---1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGTGGT............................................................................................................................................197.000.001.001.002.00--1.00-1.00-1.00-----------------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGTGTA............................................................................................................................................194.000.00------1.001.00-2.00-----------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGTG..............................................................................................................................................183.000.00-1.001.00-------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGGGT.............................................................................................................................................183.000.001.00-1.001.00-----------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGGGT.............................................................................................................................................192.000.001.00---------1.00----------------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGTTT.............................................................................................................................................182.000.00-2.00-------------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGAGTT............................................................................................................................................202.000.00-1.00------1.00------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGCGG.............................................................................................................................................192.000.00--1.00---1.00--------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGGT..............................................................................................................................................182.000.00--1.00-------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGGGGT............................................................................................................................................192.000.00-1.00---1.00---------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGTGTA............................................................................................................................................202.000.00------1.00---1.00----------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAATTGGGATGAGTC....192.000.00-------------------1.00----------1.00--------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGCG..............................................................................................................................................182.000.002.00--------------------------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGGGG.............................................................................................................................................181.000.00----1.00----------------------------------------
.........................................................................................................................................................................................................................................................................TCTTAATCGACATTGATTT...........................................................................................................................................................................................191.000.00-----------------1.00---------------------------
.......................................................................ATCTTTGGACCTCGGCATCG............................................................................................................................................................................................................................................................................................................................................................................................2011.001.00----------1.00----------------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGTGTG............................................................................................................................................191.000.00---1.00-----------------------------------------
................................................................................................................................................AGGCTGTGGGTGGATGTG.....................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------------1.00------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGCGGT............................................................................................................................................201.000.00------------1.00--------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGGTT.............................................................................................................................................191.000.00--------1.00------------------------------------
...............................................................................................................................................................................................................CACTTGACAACAGAACTGGGATGG................................................................................................................................................................................................................................................2411.001.00------------------1.00--------------------------
.........................................................................CTTTGGACCTCGGCATCGG...........................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------1.00--------------------
........................................................................................TCGGCCGCTTAGCTC................................................................................................................................................................................................................................................................................................................................................................................1511.001.00---------------------------------1.00-----------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGTGG.............................................................................................................................................181.000.00--1.00------------------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGAGTTT...........................................................................................................................................211.000.00---1.00-----------------------------------------
........................................................................................................................................CTGAGGACAGGCTGTGGG.............................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------1.00-----------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGAGT.............................................................................................................................................191.000.00---1.00-----------------------------------------
.......................................................................................ATCGGCCGCTTAGCTCCCTGCT..........................................................................................................................................................................................................................................................................................................................................................................2211.001.00--------------1.00------------------------------
......................................................................................CATCGGCCGCTTAGC..................................................................................................................................................................................................................................................................................................................................................................................1511.001.00-----------------------1.00---------------------
..............................................................................................................................................ACAGGCTGTGGGTGGATG.......................................................................................................................................................................................................................................................................................................................1811.001.00------------------------------------1.00--------
...............................................................................ACCTCGGCATCGGCCA........................................................................................................................................................................................................................................................................................................................................................................................161.000.00--------------------------1.00------------------
...............................................................................ACCTCGGCATCGGCCACC......................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------------------------------------1.00--
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGAGTTT...........................................................................................................................................201.000.001.00--------------------------------------------
.....................................................................................................................................................................................................................ACAACAGAACTGGGATGGAGC.............................................................................................................................................................................................................................................211.000.00----------------------------1.00----------------
...............................................................................................................................................................................................................................................TGTGGTGGACTTGGCGGCG.....................................................................................................................................................................................................................191.000.00--------------------------------1.00------------
..........................................................................................................................................................................................................................................................TGGCCAATGCATTCCTCTTA.........................................................................................................................................................................................................2011.001.00---------------------------------------1.00-----
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGTAA.............................................................................................................................................191.000.00----1.00----------------------------------------
.......................................................................................................................................................................................................................................................................................................AACACTTTGCCTTCGTGG..............................................................................................................................................................1811.001.00--------------1.00------------------------------
........................................................................................................................................................................................................................................................................................................................GGAGGGTGACAATGGAGTT............................................................................................................................................191.000.00------------1.00--------------------------------
.......................................................................................................................................................................................................................................................................................................................GGGAGGGTGACAATGGAGGTT...........................................................................................................................................211.000.001.00--------------------------------------------
..............................................................................................................................................................................................................................CTGGGATGGTGCCACTGTG......................................................................................................................................................................................................................................1950.600.60-------------------------------------------0.60-
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGCCTGGAATTG.............1640.250.25--------------------------------------------0.25

Antisense strand
CTGAATAAGTTTCCGGGCAGAGCTGCATTTATTGACGGTTATGAAAGCTGGTCAGTGAAAGTGAAACCTGTATCTTTGGACCTCGGCATCGGCCGCTTAGCTCCCTGCTTATGCACTGTGGATGTCTCTCCCATGCCTGAGGACAGGCTGTGGGTGGATGTTTTGCACGGCTTGGCAGCTGTGCCGTCTATCATGGATTTGATAGGCCACTTGACAACAGAACTGGGATGGTGCCACTGTGTGGTGGACTTGGCCAATGCATTCCTCTTAATCGACATTGCTCCAGAGAGCCAGGAACACTTTGCCTTCGTGGGAGGGTGACAATGGACTTTCACAGTATTGCTGCAGGGATATATGCATAGCCCCAACATATGTCATGATCTTATTAATGATGTTATATTAACCTCTGATTCTCTTGCAGATTTAGAAGCAGCAACGCAGCCTCTTGCCTGGAATTGGGATGATGCGGCT
.............................................................................................................................................................................................................................................................................................((((((((....((((((.((.....)).))))))....))).)))))..........................................................................................................................................
....................................................................................................................................................................................................................................................................261.......................................................................335......................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR040009(GSM532894)
G727T. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................................................................TGTGTGGTGGACTTGGCAA....................................................................................................................................................................................................................... 193.000.00--------------------1.00-1.00--------------1.00-------
.......................................................................................AGGGAGCTAAGCGGCCGAT............................................................................................................................................................................................................................................................................................................................................................................. 1912.002.00----------2.00----------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGCAACGCAGCAAG.......................... 181.000.00-------------------------------1.00-------------
................................................................................................................................................................................................................................................................................................................................ACAATGGACTTTCACAATAC................................................................................................................................... 201.000.00---------------1.00-----------------------------
................................................................................................................................................................................................................................................................................................................................ACAATGGACTTTCACAATTC................................................................................................................................... 201.000.00---------------1.00-----------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGCAGCCTCTTTT...................... 181.000.00---------------------1.00-----------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGCAGCCTCTTGGT..................... 181.000.00-----------------------------------1.00---------
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACGCAGCCTCTTGCCTGGAACC.............. 291.000.00----------------------------------1.00----------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAATTCCAGGCAAGAGGC.......... 2111.001.00----------------------------------------1.00----
..................................................................................................................................................................................................................................................................................ACATTGCTCCAGAGAAGAA.................................................................................................................................................................................. 191.000.00-------------1.00-------------------------------
...................................................................................................................................................................................................................................................................................CATTGCTCCAGAGAGCCG.................................................................................................................................................................................. 181.000.00-----------------------------------------1.00---
................................................................................................................................................................................................................................................................CAATGTCGATTAAGAGGAATGCAT............................................................................................................................................................................................... 2411.001.00-------------1.00-------------------------------
.......................................................................................................................................................................................................................................................AAGAGGAATGCATTGGCCAAGT.......................................................................................................................................................................................................... 2211.001.00----1.00----------------------------------------
.....................................................................................................................................................................................................................................................................................TTGCTCCAGAGAGCCAGGAACACTTTGCCTTCG................................................................................................................................................................. 331.000.00-----------------1.00---------------------------
...........................................................................................AAGCAGGGAGCTAAGCGGC......................................................................................................................................................................................................................................................................................................................................................................... 1911.001.00-----------------------------1.00---------------
.........................................................................................................................................................................................................................................................................................................................................................................................................GAGAATCAGAGGTTAATATAAC........................................................ 2220.500.50-------------0.50-------------------------------
...........TGCAGCTCTGCCCGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1650.200.20------------------0.20--------------------------