ID: uc010ixz.1_intron_3_0_chr5_69771428_f.5p
GENE: SMA(4)
chr5:69771378-69771627+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(3)
BRAIN 		(12)
BREAST 		(21)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ATCAGCTGTGGGAGTTGCAGCACTGGCCAAAGCAGGTCTTTTCTACACAGGTGAGTCAGTAGGTTGTGCCCACTTGCTTGCTTGACCTTTAATTCCCACATAGACTTTATGCTCCTGGGCTTACGTTTAGCTACACTCAGCAATGTCCACTAGCTTCAGCGTTTCTTTTTCTTTTCTTTTTTTTTCCCCCTTGGAGACAGAGTTGCCCAGGCTGGAATGCAGATCTTGGCTCACTGCAACCTCCACCTCC
..................................................((((((.(((.((.....)).))).)))))).........................................................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR189782SRR343334SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR343337SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR189787SRR189783SRR343336SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577746(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR040022(GSM532907)
G575N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................ACCTTTAATTCCCACAGTAG..................................................................................................................................................2044.000.00-22.00-16.00-----4.00--------2.00---------------------------------------------------
...................................................TGAGTCAGTAGGTTGTATAG...................................................................................................................................................................................2012.000.00--8.00-----1.00--------1.00-------1.00---------------1.00----------------------------
.....................................................................................................................................................................TTTTTCTTTTCTTTTTTTTTCCTAG............................................................255.000.00----3.00--2.00--------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTATAT...................................................................................................................................................................................203.000.00--2.00----------1.00--------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTTCTAG..............................................................273.000.00----1.00--2.00--------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTAT.....................................................................................................................................................................................183.000.00-------------------1.00------------1.00-------1.00-----------------------------
....................................................GAGTCAGTAGGTTGTATGG...................................................................................................................................................................................192.000.00---------------------1.00--------1.00---------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTTTTTTTT.......................................................................222.000.002.00---------------------------------------------------------------------
...............................................................................................................................................................CGTTTCTTTTTCTTTTCTTTTTTTTG.................................................................262.000.00----1.00-------1.00---------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTTTCGAG.............................................................262.000.001.00----1.00----------------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTAGC..................................................................212.000.001.00----1.00----------------------------------------------------------------
.......GTGGGAGTTGCAGCACTCTG...............................................................................................................................................................................................................................202.000.00--------------------------------------1.001.00------------------------------
....................................................................................ACCTTTAATTCCCACAGCAG..................................................................................................................................................202.000.00---2.00------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTAAAG...................................................................................................................................................................................202.000.00--2.00-------------------------------------------------------------------
....................................................GAGTCAGTAGGTTGTATAG...................................................................................................................................................................................192.000.00--2.00-------------------------------------------------------------------
..................................................................................................................................................................TTCTTTTTCTTTTCTTTTTTTATTG...............................................................252.000.00-------2.00--------------------------------------------------------------
..................................................................................................................................................................TTCTTTTTCTTTTCTTTTTTTTCATG..............................................................262.000.001.00---1.00-----------------------------------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTTTTGGA........................................................................212.000.002.00---------------------------------------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTTTTCTTTTTTTAGCC...............................................................302.000.002.00---------------------------------------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTGG............................................................................172.000.001.00----1.00----------------------------------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTTTTTTGG.......................................................................222.000.00-----2.00----------------------------------------------------------------
....................................................................................................................................................................CTTTTTCTTTTCTTTTTTTTTCTTCC............................................................262.000.002.00---------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTACAG...................................................................................................................................................................................202.000.00-----------1.00-----1.00----------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGTGGT..................................................................................................................................................................................2151.800.20-------------0.60---------0.20-------------------0.40-0.20---0.20------------------0.20-
...................................................TGAGTCAGTAGGTTGTATGG...................................................................................................................................................................................201.000.00--------1.00-------------------------------------------------------------
.................................................................................................................................................................................................................................TTGGCTCACTGCAACCTCCACCTAGGT271.000.001.00---------------------------------------------------------------------
..................................................................................................................................................................TTCTTTTTCTTTTCTTTTTTTCG.................................................................231.000.00-------1.00--------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTCTA....................................................................................................................................................................................191.000.00----------------1.00-----------------------------------------------------
........................................................................................................................................................................TTCTTTTCTTTTTTTTTCCCTGG...........................................................231.000.001.00---------------------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTAATG...............................................................241.000.00----1.00-----------------------------------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTTTTGG.........................................................................201.000.00-----1.00----------------------------------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTTTTTGAG.......................................................................221.000.001.00---------------------------------------------------------------------
...........................................................................................................................................................TCAGCGTTTCTTTTTCTCTTC..........................................................................211.000.00-----1.00----------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGCTGTT.................................................................................................................................................................................221.000.00----------------1.00-----------------------------------------------------
...................................................TGAGTCAGTAGGTTGTAGAA...................................................................................................................................................................................201.000.00--1.00-------------------------------------------------------------------
.....................................................................................................................................................................TTTTTCTTTTCTTTTTTTTTCGGCG............................................................251.000.001.00---------------------------------------------------------------------
.........................................................................................................................................................................TCTTTTCTTTTTTTTTCCAATG...........................................................221.000.00-----------1.00----------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTAAAA...................................................................................................................................................................................201.000.00--1.00-------------------------------------------------------------------
.......................................................................................................................................................................TTTCTTTTCTTTTTTTTTCCCCCACAG........................................................271.000.00----1.00-----------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTGGGT..................................................................231.000.001.00---------------------------------------------------------------------
........................................................................................................................................................................TTCTTTTCTTTTTTTTTCCGGTC...........................................................231.000.00-----1.00----------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGCGTT..................................................................................................................................................................................211.000.00--------1.00-------------------------------------------------------------
....................................................................................................................................................................CTTTTTCTTTTCTTTTTTTACG................................................................221.000.00----1.00-----------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGCGTTA.................................................................................................................................................................................221.000.00-------------------------------1.00--------------------------------------
.....................................................................................................................................................................TTTTTCTTTTCTTTTTTTTTCGG..............................................................231.000.001.00---------------------------------------------------------------------
.......................................................................................................................................................................TTTCTTTTCTTTTTTTTTCGGC.............................................................221.000.001.00---------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGAAAC....................................................................................................................................................................................191.000.00-------------1.00--------------------------------------------------------
.........................................................................................................................................................................TCTTTTCTTTTTTTTTCCGT.............................................................201.000.00--------------------1.00-------------------------------------------------
...................................................TGAGTCAGTAGGTTGTAGT....................................................................................................................................................................................191.000.00--1.00-------------------------------------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTTTTCTTGGAA....................................................................251.000.00-----1.00----------------------------------------------------------------
..................................................................................................................................................................TTCTTTTTCTTTTCTTTTTTTTTCCG..............................................................261.000.00----1.00-----------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGCGGGT.................................................................................................................................................................................221.000.00-----------------------------------1.00----------------------------------
...................................................TGAGTCAGTAGGTTGTA......................................................................................................................................................................................171.000.00--1.00-------------------------------------------------------------------
........................................................................................................................................................................................................AGTTGCCCAGGCTGGAATGCAGCGGC........................261.000.001.00---------------------------------------------------------------------
..............................................................................................................................................................................TCTTTTTTTTTCCCCCTTAGC.......................................................211.000.00-----1.00----------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTAAAG...............................................................261.000.00----------1.00-----------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTATAA...................................................................................................................................................................................201.000.00--1.00-------------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTTTCATT.............................................................281.000.001.00---------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTATG....................................................................................................................................................................................191.000.00--1.00-------------------------------------------------------------------
................................................................................................................................................................GTTTCTTTTTCTTTTCTTTTTTTTTCCAT.............................................................291.000.00----1.00-----------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTCGAG...............................................................261.000.001.00---------------------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTTTCTGG.............................................................261.000.001.00---------------------------------------------------------------------
..........GGAGTTGCAGCACTGTAGC.............................................................................................................................................................................................................................191.000.00---------------1.00------------------------------------------------------
.........................................................................................................................................................................TCTTTTCTTTTTTTTTCGGC.............................................................201.000.001.00---------------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTACG................................................................251.000.00----1.00-----------------------------------------------------------------
..........GGAGTTGCAGCACTGGAAC.............................................................................................................................................................................................................................191.000.00---------------1.00------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTGTC.................................................................241.000.00-----1.00----------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTTCAC...............................................................261.000.00-----1.00----------------------------------------------------------------
.......................................................................................................................................................................TTTCTTTTCTTTTTTTTTCCCCCTCGG........................................................271.000.001.00---------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGCACTT.................................................................................................................................................................................221.000.00-------------------1.00--------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTTTCTCTG............................................................271.000.00----1.00-----------------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTTTCG...............................................................241.000.001.00---------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGCGGTT.................................................................................................................................................................................221.000.00----------------------------------1.00-----------------------------------
..............................................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCACCTCCGGTG321.000.00-----1.00----------------------------------------------------------------
....................................................................................................................................................................................................................TGGAATGCAGATCTTTTTT...................191.000.00---------------------------------1.00------------------------------------
..................................................................................................................................................................TTCTTTTTCTTTTCTTTTTTTTTCCCG.............................................................271.000.001.00---------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTATGT...................................................................................................................................................................................201.000.00-----------------------1.00----------------------------------------------
.....................................................................................................................................................................TTTTTCTTTTCTTTTTTTTTCCCTGGA..........................................................271.000.001.00---------------------------------------------------------------------
.......................................................................................................................................................................TTTCTTTTCTTTTTTTTTCGGG.............................................................221.000.001.00---------------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTAAAG.................................................................241.000.00----------1.00-----------------------------------------------------------
.....................................................................................CCTTTAATTCCCACAGTAG..................................................................................................................................................191.000.00-1.00--------------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTCTTG...............................................................261.000.001.00---------------------------------------------------------------------
.........................................................................................................................................................................TCTTTTCTTTTTTTTTCCCCACAG.........................................................241.000.00----------1.00-----------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTTTCTTG.............................................................281.000.00----1.00-----------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTCTCG...................................................................................................................................................................................201.000.00-------------------------------------1.00--------------------------------
.......................................................................................................................................................................TTTCTTTTCTTTTTTTTTCCCTGTG..........................................................251.000.001.00---------------------------------------------------------------------
..............................................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCACCTCCGGC311.000.00-----1.00----------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTGCAG................................................................251.000.001.00---------------------------------------------------------------------
..............................................................................................................................................................................................................CCAGGCTGGAATGCAGAACAA.......................211.000.00------------------------------------1.00---------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTTTCCTATG...........................................................281.000.00------------1.00---------------------------------------------------------
..................................................................................................................................................................TTCTTTTTCTTTTCTTTTTTTTAATC..............................................................261.000.001.00---------------------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTACG................................................................231.000.001.00---------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGCAGTT.................................................................................................................................................................................221.000.00----------------------1.00-----------------------------------------------
......................................................................................................................................................................TTTTCTTTTCTTTTTTTTTCCCTCAG..........................................................261.000.00----1.00-----------------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTTTCG...............................................................261.000.00-------1.00--------------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTAGGC...............................................................241.000.00-----1.00----------------------------------------------------------------
....................................................GAGTCAGTAGGTTGTGTGGT..................................................................................................................................................................................201.000.00--------------1.00-------------------------------------------------------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTTTCGAG.............................................................281.000.001.00---------------------------------------------------------------------
..........GGAGTTGCAGCACTGTGAC.............................................................................................................................................................................................................................191.000.00---------------------------1.00------------------------------------------
..................................................GTGAGTCAGTAGGTTGAGTG....................................................................................................................................................................................201.000.00----------------------------1.00-----------------------------------------
..................................................................................................................................................................TTCTTTTTCTTTTCTTTTTTTTCTGG..............................................................261.000.00----1.00-----------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGCGGTA.................................................................................................................................................................................221.000.00--------1.00-------------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTTTCTGGG............................................................271.000.001.00---------------------------------------------------------------------
..............................................................................................................................................................................................................................ATCTTGGCTCACTGCAACCTCCACCGCGG291.000.001.00---------------------------------------------------------------------
...............................................................................................................................................................................CTTTTTTTTTCCCCCTTAAG.......................................................201.000.00------------1.00---------------------------------------------------------
.......................................................................................................................................................................TTTCTTTTCTTTTTTTTTCCCCCAGC.........................................................261.000.001.00---------------------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTTTG....................................................................................................................................................................................191.000.00--------------1.00-------------------------------------------------------
...................................................................................................................................................................TCTTTTTCTTTTCTTTTTTTTTCCCCCCC..........................................................291.000.001.00---------------------------------------------------------------------
.............................................................................................................................................................AGCGTTTCTTTTTCTTTTAGCC.......................................................................221.000.001.00---------------------------------------------------------------------
..............................AGCAGGTCTTTTCTACACAGGTA.....................................................................................................................................................................................................231.000.00------------------------1.00---------------------------------------------
...................................................TGAGTCAGTAGGTTGTGTGG...................................................................................................................................................................................2050.800.20---------------------------------------------------0.20---0.20-----0.20-0.20------
...................................................TGAGTCAGTAGGTTGTGT.....................................................................................................................................................................................1850.600.20---------------------0.20----------------------------0.20--0.20----------------
..................................................GTGAGTCAGTAGGTTGT.......................................................................................................................................................................................1750.600.60------------------------------------------0.60---------------------------
...................................................TGAGTCAGTAGGTTGTGTG....................................................................................................................................................................................1950.400.20--------------------------------------------0.20--------------------0.20----
...................................................TGAGTCAGTAGGTTGTGTAGT..................................................................................................................................................................................2150.400.20----------------------0.20-------------------------------0.20---------------
...................................................TGAGTCAGTAGGTTGTGTGAT..................................................................................................................................................................................2150.400.20----------------------------------------------0.20---------------0.20-------
..................................................................................................CATAGACTTTATGCTCCTGGGCTTACG.............................................................................................................................2750.200.20----------------------------------------------------0.20-----------------
.......GTGGGAGTTGCAGCACTGGCCAAAGC.........................................................................................................................................................................................................................2650.200.20------------------------------------------0.20---------------------------
...................................................TGAGTCAGTAGGTTGTGGGGG..................................................................................................................................................................................2150.200.20---------------------------------------------0.20------------------------
...................................................TGAGTCAGTAGGTTGTGTGA...................................................................................................................................................................................2050.200.20--------------------------------------------0.20-------------------------
...................................................TGAGTCAGTAGGTTGTGTGC...................................................................................................................................................................................2050.200.20---------------0.20------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTG......................................................................................................................................................................................1750.200.20------------------------------------------------------------0.20---------
.................................................................................................................................................................TTTCTTTTTCTTTTCTTTTTTTTTCCCCCTTG.........................................................3250.200.20----------0.20-----------------------------------------------------------
...................................................TGAGTCAGTAGGTTGTGTTGT..................................................................................................................................................................................2150.200.20--------------0.20-------------------------------------------------------
...AGCTGTGGGAGTTGCAGCACTGGC...............................................................................................................................................................................................................................2450.200.20-----------------------------------------------0.20----------------------
.....CTGTGGGAGTTGCAGCACTGGCC..............................................................................................................................................................................................................................2350.200.20-----------------------------------------------------------0.20----------
......................................TTTTCTACACAGGTGAGTC.................................................................................................................................................................................................1950.200.20-------------------------------------------------------------------0.20--
...................................................TGAGTCAGTAGGTTGTGTTG...................................................................................................................................................................................2050.200.20--------------------------------------------0.20-------------------------
...................................................TGAGTCAGTAGGTTGTGTGGA..................................................................................................................................................................................2150.200.20--------------0.20-------------------------------------------------------
....GCTGTGGGAGTTGCAGCACTGGCCAAAGCAGG......................................................................................................................................................................................................................3250.200.20---------------------------------------------------------0.20------------
.............GTTGCAGCACTGGCCAAAGCA........................................................................................................................................................................................................................2150.200.20-------------------------------------------0.20--------------------------
...................................................TGAGTCAGTAGGTTGTGAATT..................................................................................................................................................................................2150.200.20----------------------------------------------------------------0.20-----
.....................................................................................................................................................................TTTTTCTTTTCTTTTTTTTTCCCCC............................................................2560.170.170.17---------------------------------------------------------------------

Antisense strand
ATCAGCTGTGGGAGTTGCAGCACTGGCCAAAGCAGGTCTTTTCTACACAGGTGAGTCAGTAGGTTGTGCCCACTTGCTTGCTTGACCTTTAATTCCCACATAGACTTTATGCTCCTGGGCTTACGTTTAGCTACACTCAGCAATGTCCACTAGCTTCAGCGTTTCTTTTTCTTTTCTTTTTTTTTCCCCCTTGGAGACAGAGTTGCCCAGGCTGGAATGCAGATCTTGGCTCACTGCAACCTCCACCTCC
..................................................((((((.(((.((.....)).))).)))))).........................................................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343335SRR189782SRR343334SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR343337SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR189787SRR189783SRR343336SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577746(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR040019(GSM532904)
G701T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR040022(GSM532907)
G575N. (cervix)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
..................................TACTGACTCACCTGTGTAGAAAAGACC............................................................................................................................................................................................. 2753.003.00------3.00---------------------------------------------------------------
........................................................................................................CTTTATGCTCCTGGGCAG................................................................................................................................ 181.000.00--------------------1.00-------------------------------------------------
................................................................................................................................................................................................................................CTTGGCTCACTGCAACCTCCACTAG. 251.000.001.00---------------------------------------------------------------------
................................................................................CTTGACCTTTAATTCTGC........................................................................................................................................................ 181.000.00-----------1.00----------------------------------------------------------
...........................................................................................................................................................................GGGGGAAAAAAAAAGAAAA............................................................ 1901.001.00-----------------------------1.00----------------------------------------
..........................................................................................................................................................................CTTTTCTTTTTTTTTCCCCCTT.......................................................... 221.000.00--------------------------1.00-------------------------------------------
.......................TGGCCAAAGCAGGTCTTTTCTACACTGC....................................................................................................................................................................................................... 281.000.00------1.00---------------------------------------------------------------
........................................................................TGGGAATTAAAGGTCAAGCAAGCAAG........................................................................................................................................................ 2650.400.40------0.40---------------------------------------------------------------
....................TGTAGAAAAGACCTGCTTTGGCCAGTG........................................................................................................................................................................................................... 2750.400.40------0.40---------------------------------------------------------------
..........................................................................TATGTGGGAATTAAAGGTCAAGCAAGCA.................................................................................................................................................... 2850.400.40------0.40---------------------------------------------------------------
...............................TGACTCACCTGTGTAGAAAAGACCTGC................................................................................................................................................................................................ 2750.400.40------0.40---------------------------------------------------------------
...................................................................................TAAAGTCTATGTGGGAATTAAAGGTC............................................................................................................................................. 2650.400.40------0.40---------------------------------------------------------------
..................................TGACTCACCTGTGTAGAAAAGACC................................................................................................................................................................................................ 2450.400.40------0.40---------------------------------------------------------------
...............................TACTGACTCACCTGTGTAGAAAAGACCTGC............................................................................................................................................................................................. 3050.400.40------0.40---------------------------------------------------------------
........................CCTGTGTAGAAAAGACCTGCTTTGGCC....................................................................................................................................................................................................... 2750.200.20------0.20---------------------------------------------------------------
........................................................................................................................................................................................TGGGCAACTCTGTCTCCAAGGGGGA......................................... 2550.200.20------0.20---------------------------------------------------------------
...............................................................................TAAAGTCTATGTGGGAATTAAAGGTCAAGC............................................................................................................................................. 3050.200.20------0.20---------------------------------------------------------------
.....................................................................................................................................................AAGAAACGCTGAAGCTAG................................................................................... 1850.200.20--------------------------------------------------------0.20-------------
..........................................................................................................................................................................................CAGCCTGGGCAACTCTGTCTCCAAGGGG.................................... 2850.200.20------------------------------------------------0.20---------------------
.............................CTCACCTGTGTAGAAAAGACCTGCTT................................................................................................................................................................................................... 2650.200.20------0.20---------------------------------------------------------------
................................................................TAAAGGTCAAGCAAGCAAGTGGGCACA............................................................................................................................................................... 2750.200.20------0.20---------------------------------------------------------------
..........................................................................TCTATGTGGGAATTAAAGGTCAAGCAAGCA.................................................................................................................................................. 3050.200.20------0.20---------------------------------------------------------------
............................CTCACCTGTGTAGAAAAGACCTGCTTT................................................................................................................................................................................................... 2750.200.20------0.20---------------------------------------------------------------
........................................................................................................................................................AAAAGAAAAGAAAAAGAAACGCTGAAGC...................................................................... 2850.200.20------0.20---------------------------------------------------------------
.................................................................................................................TGAGTGTAGCTAAACGTAAGCCCAGG............................................................................................................... 2650.200.20------0.20---------------------------------------------------------------
...........................................................................TATGTGGGAATTAAAGGTCAAGCAAGC.................................................................................................................................................... 2750.200.20------0.20---------------------------------------------------------------
.................................................................................................................................TAGTGGACATTGCTGAGTGTAGC.................................................................................................. 2350.200.20------0.20---------------------------------------------------------------
........................................................................TGTGGGAATTAAAGGTCAAGCAAGCAAG...................................................................................................................................................... 2850.200.20------0.20---------------------------------------------------------------
......................................................................................................................CATTGCTGAGTGTAGCTAAACGTAAGC......................................................................................................... 2750.200.20------------------------------------------------------------------0.20---
...................................TGACTCACCTGTGTAGAAAAGAC................................................................................................................................................................................................ 2350.200.20------0.20---------------------------------------------------------------
................................TGACTCACCTGTGTAGAAAAGACCTG................................................................................................................................................................................................ 2650.200.20------0.20---------------------------------------------------------------
............................................................................TATGTGGGAATTAAAGGTCAAGCAAG.................................................................................................................................................... 2650.200.20------0.20---------------------------------------------------------------
......................................................................................................GCTAAACGTAAGCCCAGGAGCATAAAGTC....................................................................................................................... 2950.200.20------0.20---------------------------------------------------------------
.................................................................TTAAAGGTCAAGCAAGCAAGTGGGCAC.............................................................................................................................................................. 2750.200.20------0.20---------------------------------------------------------------
..............................................................................................................TGAGTGTAGCTAAACGTAAGCCCAGGAGC............................................................................................................... 2950.200.20------0.20---------------------------------------------------------------
.........................................ACCTACTGACTCACCTGTGTAGA.......................................................................................................................................................................................... 2350.200.20----------------------------------------------------------0.20-----------
..........................TGTAGAAAAGACCTGCTTTGG........................................................................................................................................................................................................... 2150.200.20------0.20---------------------------------------------------------------
.................................................................................................................................CATTGCTGAGTGTAGC......................................................................................................... 1680.120.12---------------------------------------------------------------------0.12