ID: uc010itn.1_intron_0_0_chr5_7869303_f.5p
GENE: MTRR(1)
chr5:7869253-7869502+


(1)
AGO2.ip 		(11)
B-CELL 		(1)
BRAIN 		(15)
BREAST 		(36)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(5)
HELA 		(6)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
XRN.ip

Sense strand
GCTGCGTCAGTGCGCGCTGGCGCAAGGTTGGTGGAAGTCGCGTTGTGCAGGTTCGTGCCCGGCTGGCGCGGCGTGGGTAAGCTGCCTGTCGGCTACGGTTCCCGGATTCCGGCCGCTCGCCCTGCACTAATCTCCTGGGAGAGGCGGCCCGGGGCGGGGGTGGGCAGCCGGCTTGCGCCCGTGGTTCCCACGCCCTTCGGCCTCCGGGGGTCGCCGCGGGCGCGGGCTGGGGCTCGGACTTGGCCTTTGG
.................................................((.(((((.(((((.((.(((((........)))))))))))).)))))..))....................................................................................................................................................
............................................45........................................................103.................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM359198(GSM359198)
hepg2_cip_tap_pasr_a. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		GSM532872(GSM532872)
G652T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................CTGCCTGTCGGCTACGGT.......................................................................................................................................................18123.0023.006.001.0010.003.001.00---------------------------------1.00------------------------------------------------1.00----------------
....................................................................CGGCGTGGGTAAGCTGCCTGTCGGCTA...........................................................................................................................................................27111.0011.00-----10.00--------------------------------------------------------------------------------1.00-----------------
...............................................................................................CGGTTCCCGGATTCCGGC.........................................................................................................................................18111.0011.002.00-2.00-7.00---------------------------------------------------------------------------------------------------
............................................GTGCAGGTTCGTGCCCGGCTGGC.......................................................................................................................................................................................23110.0010.00--------5.00-4.00-------------1.00-------------------------------------------------------------------------------
.......................................................................................GTCGGCTACGGTTCCCGGAT...............................................................................................................................................2019.009.008.001.00------------------------------------------------------------------------------------------------------
.............................................................................................TACGGTTCCCGGATTCCGGC.........................................................................................................................................2017.007.00---6.001.00---------------------------------------------------------------------------------------------------
.................................................GGTTCGTGCCCGGCTGGCG......................................................................................................................................................................................1916.006.006.00-------------------------------------------------------------------------------------------------------
...........................................................................GGTAAGCTGCCTGTCGGCTA...........................................................................................................................................................2016.006.00-----6.00--------------------------------------------------------------------------------------------------
..............................................................................AAGCTGCCTGTCGGCTACGG........................................................................................................................................................2015.005.005.00-------------------------------------------------------------------------------------------------------
..............................................................................AAGCTGCCTGTCGGCTACGGT.......................................................................................................................................................2115.005.004.00--1.00----------------------------------------------------------------------------------------------------
....................................GTCGCGTTGTGCAGGTTCGTGCC...............................................................................................................................................................................................2315.005.00-5.00------------------------------------------------------------------------------------------------------
...........GCGCGCTGGCGCAAGGTTGGTGGAAGTCG..................................................................................................................................................................................................................2915.005.00-4.00-1.00----------------------------------------------------------------------------------------------------
...............................................CAGGTTCGTGCCCGGCTGGC.......................................................................................................................................................................................2014.004.00---4.00----------------------------------------------------------------------------------------------------
...........GCGCGCTGGCGCAAGGTTGGTGGAAGT....................................................................................................................................................................................................................2714.004.00-1.00-3.00----------------------------------------------------------------------------------------------------
.........................................................................................CGGCTACGGTTCCCGGATTC.............................................................................................................................................2014.004.004.00-------------------------------------------------------------------------------------------------------
...............................................CAGGTTCGTGCCCGGCTGGCG......................................................................................................................................................................................2114.004.003.00----------------------------1.00--------------------------------------------------------------------------
.....................................................................................................................................................CGGGGCGGGGGTGGGCGG...................................................................................183.000.00----------------2.00--------------------------------------1.00------------------------------------------------
..................................................................................TGCCTGTCGGCTACGGT.......................................................................................................................................................1713.003.001.00-2.00-----------------------------------------------------------------------------------------------------
.............................................................................................................................................................................TGCGCCCGTGGTTCCCACGCCCTTCGGCCTCCGGGGGTCGCCGCGGGCGCGGGCTGGGGCTCGGACTTGG.......7013.003.00---------------3.00----------------------------------------------------------------------------------------
...............................................................................................CGGTTCCCGGATTCCGG..........................................................................................................................................1713.003.00--3.00-----------------------------------------------------------------------------------------------------
................................................................................GCTGCCTGTCGGCTACGGT.......................................................................................................................................................1913.003.002.00---------------------------1.00---------------------------------------------------------------------------
....................................................TCGTGCCCGGCTGGCGCGGCGTGGGTAAGCT.......................................................................................................................................................................3113.003.00--------------------------------2.00---------------------------------------------------------------1.00-------
........................AGGTTGGTGGAAGTCGCGT...............................................................................................................................................................................................................1913.003.00-------1.00--------------------------------------------------------1.00--------------------1.00------------------
...............................TGGAAGTCGCGTTGTGCAG........................................................................................................................................................................................................1913.003.003.00-------------------------------------------------------------------------------------------------------
..............................GTGGAAGTCGCGTTGTGCAG........................................................................................................................................................................................................2013.003.00-3.00------------------------------------------------------------------------------------------------------
...........................................................................................GCTACGGTTCCCGGATTCCGGC.........................................................................................................................................2213.003.00-3.00------------------------------------------------------------------------------------------------------
...................GCGCAAGGTTGGTGGAAGTCG..................................................................................................................................................................................................................2113.003.00-1.00-----1.00--------------------------------------------------------------------------1.00---------------------
................................................................................................GGTTCCCGGATTCCGGC.........................................................................................................................................1712.002.00--1.00-1.00---------------------------------------------------------------------------------------------------
........................AGGTTGGTGGAAGTCGCGTTGTGA..........................................................................................................................................................................................................242.000.00-----------------------------------------------------------1.00---1.00----------------------------------------
.....................GCAAGGTTGGTGGAAGTCGCG................................................................................................................................................................................................................2112.002.00------------1.00------------------------------------------------1.00------------------------------------------
......................CAAGGTTGGTGGAAGTCGCG................................................................................................................................................................................................................2012.002.00-------------------------------------------------------------------------1.00------------------------1.00-----
.................................................................................CTGCCTGTCGGCTACGG........................................................................................................................................................1712.002.00--1.00----------------------1.00------------------------------------------------------------------------------
.......................................................................................GTCGGCTACGGTTCCCGGA................................................................................................................................................1912.002.00-2.00------------------------------------------------------------------------------------------------------
.................................................................GCGCGGCGTGGGTAAGCTGC.....................................................................................................................................................................2012.002.002.00-------------------------------------------------------------------------------------------------------
...................................................................................GCCTGTCGGCTACGGTTCC....................................................................................................................................................1912.002.00------------------------------1.00-----------------------------------------------------1.00-------------------
...................................AGTCGCGTTGTGCAGGTTCG...................................................................................................................................................................................................2012.002.00-----------------------------------2.00--------------------------------------------------------------------
...........................................................CGGCTGGCGCGGCGTGGGT............................................................................................................................................................................1912.002.00---2.00----------------------------------------------------------------------------------------------------
........................AGGTTGGTGGAAGTCGCGTTG.............................................................................................................................................................................................................2112.002.00---------------------------------1.00-----------1.00----------------------------------------------------------
......................CAAGGTTGGTGGAAGTCG..................................................................................................................................................................................................................1812.002.00-------1.00----------------------------------------------------------------------1.00-------------------------
...................................AGTCGCGTTGTGCAGGTT.....................................................................................................................................................................................................1812.002.00-----------------------------------------------1.00-----------------------1.00--------------------------------
................................................AGGTTCGTGCCCGGCTGGC.......................................................................................................................................................................................1912.002.00--1.00-1.00---------------------------------------------------------------------------------------------------
.....................................................................................CTGTCGGCTACGGTTTT....................................................................................................................................................1722.000.50------------------------------------1.00------------1.00------------------------------------------------------
...................................................................................GCCTGTCGGCTACGGTTC.....................................................................................................................................................1812.002.00--1.00--------1.00--------------------------------------------------------------------------------------------
....................CGCAAGGTTGGTGGAAGTCGCGTT..............................................................................................................................................................................................................2412.002.00---------1.00-------------------------------1.00--------------------------------------------------------------
....................................................................................CCTGTCGGCTACGGTTCC....................................................................................................................................................1812.002.00-----------1.00------------------1.00-------------------------------------------------------------------------
....................................GTCGCGTTGTGCAGGTTCGTG.................................................................................................................................................................................................2112.002.00-2.00------------------------------------------------------------------------------------------------------
..................................AAGTCGCGTTGTGCAGGTTCG...................................................................................................................................................................................................2111.001.00--------------1.00-----------------------------------------------------------------------------------------
.................................................................................CTGCCTGTCGGCTACGGTTCC....................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------1.00-----------
...........................................................................................................................GCACTAATCTCCTGGGAGA............................................................................................................1911.001.00----------------------------------1.00---------------------------------------------------------------------
........................................................................................TCGGCTACGGTTCCCGG.................................................................................................................................................1711.001.00-----------1.00--------------------------------------------------------------------------------------------
....................................................................CGGCGTGGGTAAGCTGCCT...................................................................................................................................................................1911.001.00-------------------------1.00------------------------------------------------------------------------------
....................................................................................CCTGTCGGCTACGGTTTT....................................................................................................................................................181.000.00---------------------------------------------------------------------------1.00----------------------------
..............................................GCAGGTTCGTGCCCGGCTG.........................................................................................................................................................................................1911.001.00---------------------------------1.00----------------------------------------------------------------------
..................................................................................................................................................GCCCGGGGCGGGGGTCC.......................................................................................171.000.00---------------------------------------1.00----------------------------------------------------------------
....................CGCAAGGTTGGTGGAAGT....................................................................................................................................................................................................................1811.001.00----------------------------------------------------------------------------1.00---------------------------
...............................................................TGGCGCGGCGTGGGT............................................................................................................................................................................1511.001.00-----------------------------------------------------1.00--------------------------------------------------
..........................GTTGGTGGAAGTCGCGTTGTG...........................................................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------1.00-------------
.........................................................................................................ATTCCGGCCGCTCGCCCTGCACCTC........................................................................................................................251.000.00--------------------------------------------------------------------------1.00-----------------------------
.......................AAGGTTGGTGGAAGTCGCGTTGTGCAGGTTCGT..................................................................................................................................................................................................3311.001.00------------------------------------1.00-------------------------------------------------------------------
.........................GGTTGGTGGAAGTCGCGTTGTGCAGGTTCGT..................................................................................................................................................................................................3111.001.00---------1.00----------------------------------------------------------------------------------------------
......................................CGCGTTGTGCAGGTTCG...................................................................................................................................................................................................1711.001.00------------------------------------------------------------------1.00-------------------------------------
..............................GTGGAAGTCGCGTTGTG...........................................................................................................................................................................................................1711.001.00------------------------------------------------------------------------1.00-------------------------------
...............................................................................AGCTGCCTGTCGGCTACGGT.......................................................................................................................................................2011.001.001.00-------------------------------------------------------------------------------------------------------
..............................................................CTGGCGCGGCGTGGGTAAGCT.......................................................................................................................................................................2111.001.00----------------------------------------------1.00---------------------------------------------------------
........................................................GCCCGGCTGGCGCGGGCC................................................................................................................................................................................181.000.00-------------------------------------1.00------------------------------------------------------------------
.....................................................................................CTGTCGGCTACGGTTCC....................................................................................................................................................1711.001.00-----------------------1.00--------------------------------------------------------------------------------
.................TGGCGCAAGGTTGGTGGAAGTCG..................................................................................................................................................................................................................2311.001.00--------------1.00-----------------------------------------------------------------------------------------
.................................................................................CTGCCTGTCGGCTACGGGT......................................................................................................................................................1911.002.00--------------------------------------------------------1.00-----------------------------------------------
...................................................................................................................................................CCCGGGGCGGGGGTGTAAC....................................................................................191.000.00---------------------------------------------------------1.00----------------------------------------------
.........................GGTTGGTGGAAGTCGCGTTGT............................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------------1.00------
....................................................................................CCTGTCGGCTACGGTTCCC...................................................................................................................................................1911.001.00---1.00----------------------------------------------------------------------------------------------------
.....................................................................................CTGTCGGCTACGGTTCCCG..................................................................................................................................................1911.001.001.00-------------------------------------------------------------------------------------------------------
......................................................GTGCCCGGCTGGCGCGGCG.................................................................................................................................................................................1911.001.00------1.00-------------------------------------------------------------------------------------------------
.....................................................CGTGCCCGGCTGGCGCGGC..................................................................................................................................................................................1911.001.00--1.00-----------------------------------------------------------------------------------------------------
..........................................................CCGGCTGGCGCGGCGTGG..............................................................................................................................................................................1811.001.00-------------------1.00------------------------------------------------------------------------------------
...................................................................................GCCTGTCGGCTACGGTTCCCGGAT...............................................................................................................................................2411.001.00-------------1.00------------------------------------------------------------------------------------------
.....................................................................................................................................................CGGGGCGGGGGTGGGCGGG..................................................................................191.000.00---------------------------1.00----------------------------------------------------------------------------
...........................................................................GGTAAGCTGCCTGTCGGC.............................................................................................................................................................1811.001.00---------------------1.00----------------------------------------------------------------------------------
................................GGAAGTCGCGTTGTGCAGGTT.....................................................................................................................................................................................................2111.001.00-----------------------1.00--------------------------------------------------------------------------------
........................................CGTTGTGCAGGTTCGATTC...............................................................................................................................................................................................191.000.00-------------------------------------------------------------------1.00------------------------------------
............................................................................................CTACGGTTCCCGGATTCCGGC.........................................................................................................................................2111.001.001.00-------------------------------------------------------------------------------------------------------
.......................AAGGTTGGTGGAAGTCGCGT...............................................................................................................................................................................................................2011.001.00----------------------------------------1.00---------------------------------------------------------------
.....................................................CGTGCCCGGCTGGCGCGGCGTGGGTAATGCT......................................................................................................................................................................311.000.00---------1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CTCCGGGGGTCGCCGGTTT..............................191.000.00----------------------1.00---------------------------------------------------------------------------------
........................AGGTTGGTGGAAGTCGCGTTGTGCA.........................................................................................................................................................................................................2511.001.00-----------------------------1.00--------------------------------------------------------------------------
...................................................................................................................................................CCCGGGGCGGGGGTGTAGC....................................................................................191.000.00----------------------------1.00---------------------------------------------------------------------------
...........................................TGTGCAGGTTCGTGCCCGGCTGGCGCGGC..................................................................................................................................................................................2911.001.00----1.00---------------------------------------------------------------------------------------------------
..........................................................................GGGTAAGCTGCCTGTCGGCA............................................................................................................................................................201.000.00------------------------------------------1.00-------------------------------------------------------------
...............................................................TGGCGCGGCGTGGGTACGCT.......................................................................................................................................................................201.000.00------1.00-------------------------------------------------------------------------------------------------
......................................................................GCGTGGGTAAGCTGCCTGT.................................................................................................................................................................1911.001.00----------------------------------------------------1.00---------------------------------------------------
......................CAAGGTTGGTGGAAGTCGCGTTGTG...........................................................................................................................................................................................................2511.001.00--------------1.00-----------------------------------------------------------------------------------------
........................................................................GTGGGTAAGCTGCCTGTCGGCTA...........................................................................................................................................................2311.001.00---------------------------------------------------------------------1.00----------------------------------
.......................................................TGCCCGGCTGGCGCGGCGTG...............................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------1.00--------------------------
....................................................................................CCTGTCGGCTACGGTTTTG...................................................................................................................................................191.000.00--------------------1.00-----------------------------------------------------------------------------------
...................................................................................GCCTGTCGGCTACGGTTCCCGGATTCC............................................................................................................................................2711.001.00-------------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CGGGCTGGGGCTCGGA............1611.001.00-------------------------------1.00------------------------------------------------------------------------
.....................GCAAGGTTGGTGGAAGTCGC.................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------------------1.00--------------
..................................AAGTCGCGTTGTGCAGGTTCGTGCCCGGC...........................................................................................................................................................................................2911.001.00-1.00------------------------------------------------------------------------------------------------------
....................................................................CGGCGTGGGTAAGCTGCC....................................................................................................................................................................1811.001.00-----------------------------------------------------------------------------------1.00--------------------
.....................................TCGCGTTGTGCAGGTTCG...................................................................................................................................................................................................1811.001.00--1.00-----------------------------------------------------------------------------------------------------
.............................................................................TAAGCTGCCTGTCGGCTACGG........................................................................................................................................................2111.001.00---------------------------------------------------------------------------------------------1.00----------
.................................................................................CTGCCTGTCGGCTACGGG.......................................................................................................................................................1811.002.001.00-------------------------------------------------------------------------------------------------------
...........................................................CGGCTGGCGCGGCGTGGGTAA..........................................................................................................................................................................2111.001.00---------1.00----------------------------------------------------------------------------------------------
.........................................................................................CGGCTACGGTTCCCGGGTTC.............................................................................................................................................201.000.001.00-------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GCGCGGGCTGGGGCTCTT.............181.000.00--------------------------------------------------------------------1.00-----------------------------------
........................AGGTTGGTGGAAGTCGC.................................................................................................................................................................................................................1711.001.00-------------------------------------------1.00------------------------------------------------------------
.........................................................................................................................................GGAGAGGCGGCCCGGGGGCG.............................................................................................201.000.00------------------1.00-------------------------------------------------------------------------------------
...............................................CAGGTTCGTGCCCGGCTGG........................................................................................................................................................................................1911.001.00---1.00----------------------------------------------------------------------------------------------------
................................................................................GCTGCCTGTCGGCTACGGG.......................................................................................................................................................191.000.001.00-------------------------------------------------------------------------------------------------------
..............................................GCAGGTTCGTGCCCGGCTGG........................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------1.00------------------------
....................CGCAAGGTTGGTGGA.......................................................................................................................................................................................................................1511.001.00----------------------------------------------------------------------1.00---------------------------------
................................GGAAGTCGCGTTGTGCAGGTTCGTGCCCGGCTGGCGCGGCGTGGGTAAGCTGC.....................................................................................................................................................................5311.001.00----------------------------------------------------------------------------------------------1.00---------
......................................................................GCGTGGGTAAGCTGCCTG..................................................................................................................................................................1811.001.00----1.00---------------------------------------------------------------------------------------------------
..................................................GTTCGTGCCCGGCTGG........................................................................................................................................................................................1611.001.00----------------------------------------------------------------------------------------1.00---------------
..................................................................................TGCCTGTCGGCTACGGTT......................................................................................................................................................1811.001.001.00-------------------------------------------------------------------------------------------------------
................................................AGGTTCGTGCCCGGCTGGCG......................................................................................................................................................................................2011.001.00----------------------------------------------------------1.00---------------------------------------------
..........................GTTGGTGGAAGTCGCGTT..............................................................................................................................................................................................................1811.001.00------------1.00-------------------------------------------------------------------------------------------
...................................................................................GCCTGTCGGCTACGGTTCCCG..................................................................................................................................................2111.001.00-------------------1.00------------------------------------------------------------------------------------
.....................................................................................................CCGGATTCCGGCCGCTG....................................................................................................................................171.000.00---------------------------------------------------1.00----------------------------------------------------
.....................................................................................................................................................................................................................CCGCGGGCGCGGGCTGGGGC.................2011.001.00-------------------------------1.00------------------------------------------------------------------------
.................................................................................CTGCCTGTCGGCTACGGTTCCCGGAT...............................................................................................................................................2611.001.00---1.00----------------------------------------------------------------------------------------------------
.....................................................................................CTGTCGGCTACGGTTTGGA..................................................................................................................................................1921.000.50--------------------1.00-----------------------------------------------------------------------------------
........................................................GCCCGGCTGGCGCGGCGTGGG.............................................................................................................................................................................2111.001.00------1.00-------------------------------------------------------------------------------------------------
.......................AAGGTTGGTGGAAGTCGCG................................................................................................................................................................................................................1911.001.00-------1.00------------------------------------------------------------------------------------------------
....................................................................................CCTGTCGGCTACGGTTTGA...................................................................................................................................................191.000.00-----------------------------------------------------------------1.00--------------------------------------
.........................................................................................CGGCTACGGTTCCCGGATTCCGG..........................................................................................................................................2311.001.00---------------------------------------------------------------------------------1.00----------------------
................................................AGGTTCGTGCCCGGCTGG........................................................................................................................................................................................1811.001.00----1.00---------------------------------------------------------------------------------------------------
..........................................................CCGGCTGGCGCGGCGTG...............................................................................................................................................................................1711.001.00------------------------------------------------------------1.00-------------------------------------------
.....................GCAAGGTTGGTGGAAGTCGCGTTCTG...........................................................................................................................................................................................................261.000.00------1.00-------------------------------------------------------------------------------------------------
....................CGCAAGGTTGGTGGAAGTCGC.................................................................................................................................................................................................................2111.001.00------1.00-------------------------------------------------------------------------------------------------
.....................................................CGTGCCCGGCTGGCGCGGCGTGAA.............................................................................................................................................................................241.000.00------------------------------------------------1.00-------------------------------------------------------
......................CAAGGTTGGTGGAAGTCGCGTTG.............................................................................................................................................................................................................2311.001.00-------1.00------------------------------------------------------------------------------------------------
.....................................................CGTGCCCGGCTGGCGCGGCGTGGGTAAGCT.......................................................................................................................................................................3011.001.00----------------------------------1.00---------------------------------------------------------------------
.................................................GGTTCGTGCCCGGCTGGCGCGGCGTGG..............................................................................................................................................................................2711.001.00-------------------------------------------------------------------------------------------1.00------------
.....................................................................................................................................................CGGGGCGGGGGTGGGCGGGC.................................................................................201.000.00--------------------------------------------------1.00-----------------------------------------------------
........................AGGTTGGTGGAAGTCGCGTT..............................................................................................................................................................................................................2011.001.00--------------------------------------------1.00-----------------------------------------------------------
...........................................................................................GCTACGGTTCCCGGATTCCGG..........................................................................................................................................2111.001.00---------------------1.00----------------------------------------------------------------------------------
......................................................GTGCCCGGCTGGCGCGGCGTGGGTAAGCTGC.....................................................................................................................................................................3111.001.00----1.00---------------------------------------------------------------------------------------------------
...........................................................CGGCTGGCGCGGCGTGGGTAAG.........................................................................................................................................................................2211.001.00------------------------------------------------------1.00-------------------------------------------------
.................................................................................CTGCCTGTCGGCTACGGA.......................................................................................................................................................1811.002.00--1.00-----------------------------------------------------------------------------------------------------
.....................................................CGTGCCCGGCTGGCGCGGCGTGGGT............................................................................................................................................................................2511.001.00-1.00------------------------------------------------------------------------------------------------------
.............................GGTGGAAGTCGCGTTGTG...........................................................................................................................................................................................................1811.001.00------------1.00-------------------------------------------------------------------------------------------
.................................................................................CTGCCTGTCGGCTACGGTTCCCGGATTCC............................................................................................................................................2911.001.00---------------------------1.00----------------------------------------------------------------------------
...............................................CAGGTTCGTGCCCGGCTGGCGCGGCGTGGGTAAGC........................................................................................................................................................................3511.001.00----1.00---------------------------------------------------------------------------------------------------
.........GTGCGCGCTGGCGCAGG................................................................................................................................................................................................................................171.000.00------------------------1.00-------------------------------------------------------------------------------
...................................................................................GCCTGTCGGCTACGGTTA.....................................................................................................................................................181.000.00--------------------------------------------------------------1.00-----------------------------------------
......................................CGCGTTGTGCAGGTT.....................................................................................................................................................................................................1511.001.00----1.00---------------------------------------------------------------------------------------------------
...........................................................................................GCTACGGTTCCCGGATTCC............................................................................................................................................1911.001.00-1.00------------------------------------------------------------------------------------------------------
................CTGGCGCAAGGTTGGTGGA.......................................................................................................................................................................................................................1911.001.00----------------------1.00---------------------------------------------------------------------------------
..................................AAGTCGCGTTGTGCAGGT......................................................................................................................................................................................................1811.001.00-1.00------------------------------------------------------------------------------------------------------
....................................................................................CCTGTCGGCTACGGT.......................................................................................................................................................1520.500.50-------------------------------------------------------------------------------------------------------0.50
.....................................................................................CTGTCGGCTACGGTT......................................................................................................................................................1520.500.50----------------0.50---------------------------------------------------------------------------------------
.....................................................................................................CCGGATTCCGGCCGC......................................................................................................................................1520.500.50---------------------------------------------------------------------------------------------------0.50----
.....................................................................................................................................................CGGGGCGGGGGTGGGCAG...................................................................................1820.500.50-----------------------------------------------------------------------------------------------------0.50--
...................GCGCAAGGTTGGTGG........................................................................................................................................................................................................................1520.500.50------------------------------------------------------------------------------------------------------0.50-
........................................................................GTGGGTAAGCTGCCTG..................................................................................................................................................................1640.250.25---------------------------------------------------------------------------------------------------0.25----
...............................................................................................................................................GCGGCCCGGGGCGGGGG..........................................................................................1760.170.17-----------------0.17--------------------------------------------------------------------------------------

Antisense strand
GCTGCGTCAGTGCGCGCTGGCGCAAGGTTGGTGGAAGTCGCGTTGTGCAGGTTCGTGCCCGGCTGGCGCGGCGTGGGTAAGCTGCCTGTCGGCTACGGTTCCCGGATTCCGGCCGCTCGCCCTGCACTAATCTCCTGGGAGAGGCGGCCCGGGGCGGGGGTGGGCAGCCGGCTTGCGCCCGTGGTTCCCACGCCCTTCGGCCTCCGGGGGTCGCCGCGGGCGCGGGCTGGGGCTCGGACTTGGCCTTTGG
.................................................((.(((((.(((((.((.(((((........)))))))))))).)))))..))....................................................................................................................................................
............................................45........................................................103.................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR029124(GSM416753)
HeLa. (hela)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM359198(GSM359198)
hepg2_cip_tap_pasr_a. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532890(GSM532890)
G576T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM359190(GSM359190)
HepG2_3pM_4. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		GSM532872(GSM532872)
G652T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................GCGGGGGTGGGCAGCGGG............................................................................... 182.000.00-------------1.00------------------------------------------------------------------1.00-----------------------
...........................................................................................................................................................................................................CCGGGGGTCGCCGCGGGTCA........................... 201.000.00-----------------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................GGCGGCCCGGGGCGGGGGGA........................................................................................ 201.000.00-------------------------------------1.00------------------------------------------------------------------
......TCAGTGCGCGCTGGCGATG................................................................................................................................................................................................................................. 191.000.00--------------------------1.00-----------------------------------------------------------------------------
............................................................................................................................................................GGGGTGGGCAGCCGGCGA............................................................................ 181.000.001.00-------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GCAGCCGGCTTGCGCATCG.................................................................... 191.000.00--------------------------1.00-----------------------------------------------------------------------------
.........................................................................................................................................................GCGGGGGTGGGCAGCGGGG.............................................................................. 191.000.00-----------------------------------------------------------------------------------------------1.00--------
.........................................................CCCGGCTGGCGCGGCGT................................................................................................................................................................................ 171.000.00------------------1.00-------------------------------------------------------------------------------------
..............................................................................................................................................GGCGGCCCGGGGCGGGGGGG........................................................................................ 201.000.00-----------------1.00--------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CGCGGGCTGGGGCTCGACG........... 191.000.00------1.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................GCCCGCGCCCGCGGCG....................... 1630.670.67----------------------------------------------------------------------------------------------------0.67---
........................................................................................................................................CGGGCCGCCTCTCCC................................................................................................... 1540.250.25--------------------------------------0.25-----------------------------------------------------------------