ID: uc010ijh.1_intron_2_0_chr4_77894224_f.5p
GENE: SEPT11(3)
chr4:77894174-77894423+


(5)
B-CELL 		(15)
BREAST 		(28)
CELL-LINE 		(14)
CERVIX 		(3)
HEART 		(1)
HELA 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(1)
UTERUS

Sense strand
TGATGTTACACATTTTTAAAAATAAAAAGTAGATGAGAAGAAACCGGGTGGTGAGTAGTTGAAGTCAGTGATGGGGCCTGTTATGCTTTAAATCAAGTATCGTTGGCATGCCCTGGGAGAGTTAGTTGCTCTTAAAGTTTCTGCAGGACTTTATCACTCAAAGCCTGTGTGGGGGGAAACAAAAAAGTCAAAGCTCCATCTCTCCTGGGGTCCCTGCTTTTCTACATTCGCTTTGCTGCTACCCACCAGG
..................................................................................((((((......))))))..(((((.........((((((.....))))))...(((((((((((.((((.......)))))))))......))))))......)))))...........................................................
...............................................................................80................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040037(GSM532922)
G243T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040010(GSM532895)
G529N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
...........................................................................................................................................................................GGGGGAAACAAAAAAAAAA............................................................19071.002.001.008.0011.00----5.002.004.004.00-2.001.00----2.002.00--2.001.00-2.001.001.00--2.002.00------1.00--1.001.00--1.00--1.00-1.00-1.001.00--1.001.001.00--1.00-1.00---1.00---1.001.00----1.00-1.00------
..........................................................................................................................................................................GGGGGGAAACAAAAAAAAA.............................................................1962.000.0015.001.002.007.007.005.005.00-2.00---2.001.00-1.001.00----1.00-1.001.00---2.00-----1.00--------1.00---1.00-----------------1.00---1.00-----1.00----1.00-1.00---
..........................................................................................................................................................................GGGGGGAAACAAAAAAAAAA............................................................2021.000.00-3.00---1.00--1.00----2.00-1.002.001.00-----------1.00--1.00----1.00--1.00------------------1.001.00-1.00-----1.00----1.00---------1.00--
..........................................................................................................................................................................GGGGGGAAACAAAAAAAA..............................................................1820.000.002.002.00-1.00-1.001.00-------3.001.00-----1.00--1.00-1.00--1.00--1.00---1.00-----------------1.00-----------1.00---1.00---------------
..........................................................................................................................................................................GGGGGGAAACAAAAAAAGC.............................................................194.000.004.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................GGGGGAAACAAAAAA................................................................1502.002.00--------------------1.00--------------1.00--------------------------------------------------
..........................................................................................................................................................................GGGGGGAAACAAAAACCAA.............................................................1901.001.001.00-------------------------------------------------------------------------------------
...................................................TGAGTAGTTGAAGTCAGTGATGGGGCCCG..........................................................................................................................................................................291.000.00-----------1.00--------------------------------------------------------------------------
.................................................................................................TATCGTTGGCATGCCCTGGGAGAGCTAG.............................................................................................................................281.000.00-----------1.00--------------------------------------------------------------------------
...........................................................................................................................................................................GGGGGAAACAAAAAACAA.............................................................1801.002.00---------------------------1.00----------------------------------------------------------
....................................................................................GCTTTAAATCAAGTATCGTTGGCA..............................................................................................................................................2411.001.00--------------------------------------------------------------------------1.00-----------
...............................................................................................AGTATCGTTGGCATGCCCTGGGAGAGCT...............................................................................................................................281.000.00-----------1.00--------------------------------------------------------------------------
........................................................................................................................................................................GTGGGGGGAAACAAAAAACGG.............................................................211.000.00-----------------1.00--------------------------------------------------------------------
..........................AAGTAGATGAGAAGACCG..............................................................................................................................................................................................................181.000.00---------------------------------1.00----------------------------------------------------
..........................................................................................................................................................................GGGGGGAAACAAAAA.................................................................1501.001.00--------------------1.00-----------------------------------------------------------------
...............................................................................................................CCTGGGAGAGTTAGTTGC.........................................................................................................................1811.001.00----------------------------------------------------------------1.00---------------------
..........................................................................................................CATGCCCTGGGAGAGTTAGT............................................................................................................................2011.001.00----------------------------------------------------------------------------1.00---------
...................................................................................................................................TTAAAGTTTCTGCAGTTAA....................................................................................................191.000.00-------------------------------------------------------1.00------------------------------
..........................................................................................................................................................................................................................TTTCTACATTCGCTTCTC..............181.000.00------------------------------------------------------------------------------1.00-------
..........................................................................................................................................................................GGGGGGAAACAAAAAAAAC.............................................................191.000.00-----------------1.00--------------------------------------------------------------------
...........................................................................................................................................................................GGGGGAAACAAAAAAAAG.............................................................1801.002.00----------------------------------------------1.00---------------------------------------
....................................................................................................................................................................................................CATCTCTCCTGGGGTCCCTGCTTTTC............................2611.001.00-----------1.00--------------------------------------------------------------------------
..........................................................................................................................................................................GGGGGGAAACAAAAAAATC.............................................................191.000.001.00-------------------------------------------------------------------------------------
..........................................................................................................................................................................GGGGGGAAACAAAAAACAA.............................................................191.000.00----1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................TGGGGGGAAACAAAAAAAAA.............................................................2030.670.33------------------0.33------------------0.33------------------------------------------------
....................................................................................................................................................................................................................................CGCTTTGCTGCTACC.......1520.500.50------------------------------------------------------------------------------------0.50-
.........................................................................................................................................................................TGGGGGGAAACAAAAAAACAA............................................................2130.330.33----------------------------------0.33---------------------------------------------------
.........................................................................................................................................................................TGGGGGGAAACAAAAAA................................................................1730.330.33-----------------------------------0.33--------------------------------------------------
.........................................................................................................................................................................TGGGGGGAAACAAAAAAAAAA............................................................2130.330.330.33-------------------------------------------------------------------------------------
.........................................................................................................................................................................TGGGGGGAAACAAAAAAAA..............................................................1930.330.33------------------------------------0.33-------------------------------------------------

Antisense strand
TGATGTTACACATTTTTAAAAATAAAAAGTAGATGAGAAGAAACCGGGTGGTGAGTAGTTGAAGTCAGTGATGGGGCCTGTTATGCTTTAAATCAAGTATCGTTGGCATGCCCTGGGAGAGTTAGTTGCTCTTAAAGTTTCTGCAGGACTTTATCACTCAAAGCCTGTGTGGGGGGAAACAAAAAAGTCAAAGCTCCATCTCTCCTGGGGTCCCTGCTTTTCTACATTCGCTTTGCTGCTACCCACCAGG
..................................................................................((((((......))))))..(((((.........((((((.....))))))...(((((((((((.((((.......)))))))))......))))))......)))))...........................................................
...............................................................................80................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037935(GSM510473)
293cand3. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040037(GSM532922)
G243T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040010(GSM532895)
G529N. (cervix)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR189784SRR040040(GSM532925)
G612N. (cervix)		SRR029124(GSM416753)
HeLa. (hela)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR040016(GSM532901)
G645N. (cervix)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR191626(GSM715736)
36genomic small RNA (size selected RNA from t. (breast)		SRR029128(GSM416757)
H520. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR191597(GSM715707)
75genomic small RNA (size selected RNA from t. (breast)		SRR040014(GSM532899)
G623N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR040038(GSM532923)
G531N. (cervix)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)		SRR191564(GSM715674)
87genomic small RNA (size selected RNA from t. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
....................AATAAAAAGTAGATGAGACTTA................................................................................................................................................................................................................ 221.000.00-------------------------------------------------1.00------------------------------------
...............................................................................GTTATGCTTTAAATCATAG........................................................................................................................................................ 191.000.00---------------------------------------1.00----------------------------------------------
............................................................................................................................................................................................CAAAGCTCCATCTCTTAGT........................................... 191.000.00---------------------------------------------------1.00----------------------------------
.......................................................................................................................................................................TGTGGGGGGAAACAAACC................................................................. 181.000.00--------------------------------------------1.00-----------------------------------------
............................................................................CTTGATTTAAAGCATAACAGG......................................................................................................................................................... 2111.001.00---------------------------------------------------------------------------------1.00----
............................................................................................................................................................................................AGGAGAGATGGAGCTTTG............................................ 1820.500.50---------------------------------0.50----------------------------------------------------
............................................................................................................................................................................................CAAAGCTCCATCTCTCCTCT.......................................... 200.500.00-------------------------------------------------------------------------------------0.50