ID: uc010ihf.2_intron_1_0_chr4_57786037_f.5p
GENE: (2)
chr4:57785987-57786236+


(1)
B-CELL 		(2)
BREAST 		(11)
CELL-LINE 		(2)
HEART 		(3)
LIVER 		(3)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
CTCAAGTTCTCAGAAGACTCATCTAACTAGACATATGCGTACTCATTCAGGTTGGTAAGAAATTGGAACTTTTCTATCATTTTCAGTAAATGACCATTTTAAGGAAATTCTTTTAGACTTGTAACCGAGTCATTTACTTATTATTTATTTTTAATATAATTTAGAAGTCAGAATTTAAAAATCAGTATTCCGTCAATCTGGGGATTCCTAACATGGAATCCAAAGGTGGACCTCCTGAAAATGGAATTTT
....................................................(((((((.....((((.((((((.((((((.....))))))........))))))))))....((((((....)))))).....)))))))...........................................................................................................
..................................................51..........................................................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR189783SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577590(Rovira)
total RNA. (breast)
.....................................................................................................................................TTACTTATTATTTATTTTTTAG...............................................................................................2232.000.0014.0013.003.002.00--------------------
.................................................................................................................................TCATTTACTTATTATTTATTTTTAATATAATTTAG......................................................................................35120.0020.0010.006.002.002.00--------------------
......................................................................................................................................TACTTATTATTTATTTTTTAG...............................................................................................2113.000.007.003.002.001.00--------------------
.......................................................................................................................................ACTTATTATTTATTTTTTAG...............................................................................................2010.000.003.005.001.001.00--------------------
..................................................................................................................................CATTTACTTATTATTTATTTTTAATATAATTTAG......................................................................................3415.005.001.002.002.00---------------------
......TTCTCAGAAGACTCATCTAACTAGACATAT......................................................................................................................................................................................................................3011.001.00---------------------1.00--
...AAGTTCTCAGAAGACTCA.....................................................................................................................................................................................................................................1811.001.00----------------------1.00-
..................................................GTTGGTAAGAAATTGAAA......................................................................................................................................................................................181.000.00------------------1.00-----
.....................................................................................................................................TTACTTATTATTTATTTTTCAG...............................................................................................221.000.00---1.00--------------------
..................................................................................................................................CATTTACTTATTATTTATTTTTAATATAATTCAG......................................................................................341.000.00---1.00--------------------
.......................................................................................................................................ACTTATTATTTATTTTCTAG...............................................................................................201.000.00---1.00--------------------
.................................................................................................................................TCATTTACTTATTATTTATTTTTAATATAATCTAG......................................................................................351.000.00--1.00---------------------
....AGTTCTCAGAAGACTCATCTAACTAGACA.........................................................................................................................................................................................................................2911.001.00----1.00-------------------
.................................................................................................................................TCATTTACTTATTATTTATTTTTAATATAATTTA.......................................................................................3411.001.00-1.00----------------------
.TCAAGTTCTCAGAAGACTC......................................................................................................................................................................................................................................1911.001.00--------1.00---------------
.........TCAGAAGACTCATCTAACTAGACATATGC....................................................................................................................................................................................................................2911.001.00----1.00-------------------
..............................................................................................................................................................ATTTAGAAGTCAGAATTTAA........................................................................2011.001.00-------------------1.00----
..........CAGAAGACTCATCTAACTAGACAT........................................................................................................................................................................................................................2411.001.00-----1.00------------------
.........................ACTAGACATATGCGTACTCA.............................................................................................................................................................................................................2011.001.00-----------1.00------------
.............................................................................................................CTTTTAGACTTGTAAGT............................................................................................................................171.000.00-------------1.00----------
..........................................................................................................................................................TATAATTTAGAAGTCAGAATTTAA........................................................................2411.001.00------1.00-----------------
.....................................................................................................................................TTACTTATTATTTATTTTTTTAG..............................................................................................231.000.001.00-----------------------
..........CAGAAGACTCATCTAACTAGACA.........................................................................................................................................................................................................................2311.001.00---------1.00--------------
....................................................................................................................................................TTTTAATATAATTTAGACA...................................................................................191.000.00---------------1.00--------
......................................................................................................................................TACTTATTATTTATTTTTCAG...............................................................................................211.000.00---1.00--------------------
..................................................................................................................................................ATTTTTAATATAATTTCATG....................................................................................201.000.00-1.00----------------------
.........................................................................................................................................................................................TATTCCGTCAATCTGGGGATTCCC.........................................241.000.00-----------------1.00------
.....................................................................................................................................TTACTTATTATTTATTTTTTAT...............................................................................................221.000.00-1.00----------------------
...AAGTTCTCAGAAGACTCATCTAACTA.............................................................................................................................................................................................................................2611.001.00-------1.00----------------
.............AAGACTCATCTAACTAGACA.........................................................................................................................................................................................................................2011.001.00-----1.00------------------
....................ATCTAACTAGACATATG.....................................................................................................................................................................................................................1711.001.00----------1.00-------------
.....................................................................................................................................TTACTTATTATTTATTTTCTAG...............................................................................................221.000.00--1.00---------------------
.........TCAGAAGACTCATCTAACTAGACATA.......................................................................................................................................................................................................................2611.001.00--------------1.00---------
.............................................................................................................................................................AATTTAGAAGTCAGAATTTAA........................................................................2111.001.00--------------------1.00---
...AAGTTCTCAGAAGACTC......................................................................................................................................................................................................................................1720.500.50-----------------------0.50
................................................................................................................................................................TTAGAAGTCAGAATTTAA........................................................................1830.330.33------0.33-----------------

Antisense strand
CTCAAGTTCTCAGAAGACTCATCTAACTAGACATATGCGTACTCATTCAGGTTGGTAAGAAATTGGAACTTTTCTATCATTTTCAGTAAATGACCATTTTAAGGAAATTCTTTTAGACTTGTAACCGAGTCATTTACTTATTATTTATTTTTAATATAATTTAGAAGTCAGAATTTAAAAATCAGTATTCCGTCAATCTGGGGATTCCTAACATGGAATCCAAAGGTGGACCTCCTGAAAATGGAATTTT
....................................................(((((((.....((((.((((((.((((((.....))))))........))))))))))....((((((....)))))).....)))))))...........................................................................................................
..................................................51..........................................................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR189783SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577590(Rovira)
total RNA. (breast)
......................................................................................................................................................................GTCAGAATTTAAAAAGGTC................................................................. 191.000.00------------1.00-----------
.................................................................................................TTTAAGGAAATTCTTCTT....................................................................................................................................... 181.000.00----------------1.00-------
.......................................................................................................................................................TAATATAATTTAGAAGCG................................................................................. 181.000.00---1.00--------------------