ID: uc010icl.2_intron_16_0_chr4_2702272_f.3p
GENE: (17)
chr4:2709673-2709922+


(3)
AGO2.ip
(1)
BREAST
(13)
CELL-LINE
(2)
CERVIX
(1)
HEART
(2)
HELA
(2)
LIVER
(3)
OTHER
(6)
SKIN

Sense strand
TACTATGTTGGCCAGGCTAGTCTCGAACTCCTGACTTCAAGTGATCCTCCTGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGCCTCAGATTGTATTTCTATTGGATAGTGCTGCCCTAACTGGTTATTTATTTGTGTATGAAAGCTATTGATTTTTGTTTGTTTGTTTGTTTATTTCGAGATGGAGTTTCGCTCTTGTTGCCCAGTCTGGGGTACAATGGTGCAATCTTG
................................................................................................................((((((...(((((((....((...((((((((.(((((......)))))))))).........))).))....)))))))....))))))...............................................
...............................................................................................................112...........................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925PAZD5SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTTAACTC.....................................................276.000.006.00-----------------------------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTTACTGG.....................................................275.000.003.002.00----------------------------
...........................................................................................................................................................................TTTTTGTTTGTTTGTTTGTTTATTTACT...................................................283.000.00-3.00----------------------------
...........................................................................................................................................................................TTTTTGTTTGTTTGTTTGTTTATCCC.....................................................263.000.00-3.00----------------------------
...........................................................................................................................................................................TTTTTGTTTGTTTGTTTGTTTATCGG.....................................................263.000.001.002.00----------------------------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTTAACT......................................................263.000.003.00-----------------------------
.................................................................................................................................................................................TTTGTTTGTTTGTTTATTTCGTAGA................................................253.000.00-3.00----------------------------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTTATTGGC....................................................282.000.002.00-----------------------------
.................................................................................................................................................................................TTTGTTTGTTTGTTTATTTCCTCC.................................................242.000.002.00-----------------------------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTTATCGG.....................................................272.000.001.001.00----------------------------
............................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTATTTATC...................................................272.000.00-2.00----------------------------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTTAATC......................................................262.000.002.00-----------------------------
..............................................................................................................................................................................................TTATTTCGAGATGGAGTTTCACGC....................................241.000.00-1.00----------------------------
......................................................................CTGGGATTACAGGCGTGAGCCACTGTGAATC.....................................................................................................................................................311.000.00-----1.00------------------------
.........................................................................................................................TGGATAGTGCTGCCCTAACTGGTTACTTT....................................................................................................291.000.00-1.00----------------------------
..............................................................................................................................................................................TTGTTTGTTTGTTTGTTTATCGGC....................................................241.000.001.00-----------------------------
.........................................................................................................................................................................GATTTTTGTTTGTTTGTTTGTTTATTTCGAG..................................................3111.001.001.00-----------------------------
.......................................................................................AGCCACTGTGCCCAGCCTCAGATAGGG........................................................................................................................................271.000.001.00-----------------------------
.............................................................................................................................................................................................................GTTTCGCTCTTGTTGCCGAGT........................211.000.00----1.00-------------------------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTCTTT........................................................241.000.00-1.00----------------------------
...............................................................................................................................................................................TGTTTGTTTGTTTGTTTATTTCCTGG.................................................261.000.001.00-----------------------------
....................................................................................................................................................................................................CGAGATGGAGTTTCGCTCTTGTTGCGC...........................271.000.00--------------------1.00---------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTGGT........................................................241.000.001.00-----------------------------
..............................................................................ACAGGCGTGAGCCACTGTGCCCAGCCTCACCC............................................................................................................................................321.000.001.00-----------------------------
.......................................................................................................................................................................TTGATTTTTGTTTGTTTGTTTGTTTTTGC......................................................291.000.001.00-----------------------------
............................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTATTCCG....................................................261.000.00-1.00----------------------------
...TATGTTGGCCAGGCTAGTCTCGAACTCTG..........................................................................................................................................................................................................................291.000.00--------------1.00---------------
......................................................................................................................................................................ATTGATTTTTGTTTGTTTGTTTGTTTCTGG......................................................301.000.001.00-----------------------------
..............................................................................................................................................................................TTGTTTGTTTGTTTGTTTATTCACT...................................................251.000.001.00-----------------------------
.......................................................................................................................................................................................TGTTTGTTTATTTCGG...................................................161.000.001.00-----------------------------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTTATCAAG....................................................281.000.00-----1.00------------------------
...............................................................................................................................................................................TGTTTGTTTGTTTGTTTATTTCGG...................................................241.000.001.00-----------------------------
............................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTATTTGCT...................................................271.000.001.00-----------------------------
...........................................................................................................................................................................TTTTTGTTTGTTTGTTTGTTTATTCGAG...................................................281.000.00-1.00----------------------------
.........................................................................................................................................................................................................TGGAGTTTCGCTCTTGTTGCCGAGG........................251.000.00-----------------1.00------------
..........................................................................................................................................................................ATTTTTGTTTGTTTGTTTGTTTACCGG.....................................................271.000.001.00-----------------------------
.......................................................................................................................................................................TTGATTTTTGTTTGTTTGTTTGTTTCTG.......................................................281.000.00-1.00----------------------------
..............................................................................ACAGGCGTGAGCCACTGTGCCCAGCCTCACC.............................................................................................................................................311.000.001.00-----------------------------
...............................TGACTTCAAGTGATCCTCCTTTA....................................................................................................................................................................................................231.000.00----------------------------1.00-
............................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTATCTC.....................................................251.000.00-1.00----------------------------
............................................................................................................................................................................TTTTGTTTGTTTGTTTGTTTATTCCC....................................................261.000.001.00-----------------------------
.....................................................................................TGAGCCACTGTGCCCAGCCTCACCGT...........................................................................................................................................261.000.00-1.00----------------------------
........................................................................................................................................................................TGATTTTTGTTTGTTTGTTTACTC..........................................................241.000.00-1.00----------------------------
.....................................................................................................................................................................................................................CTTGTTGCCCAGTCTCGAG..................191.000.00---------1.00--------------------
..............................................................................................................................................................................TTGTTTGTTTGTTTGTTTATTTCGAG..................................................2621.001.001.00-----------------------------
..............................................................................................................................................................................TTGTTTGTTTGTTTGTTTATTTGTGC..................................................261.000.00-1.00----------------------------
......................................................................................................................................................................ATTGATTTTTGTTTGTTTGTTTGAG...........................................................251.000.001.00-----------------------------
......GTTGGCCAGGCTAGTCTCGAACTCC...........................................................................................................................................................................................................................2501.001.00---------------1.00--------------
...TATGTTGGCCAGGCTAATA....................................................................................................................................................................................................................................191.000.00---------------------------1.00--
...........................................................................................................................................................................TTTTTGTTTGTTTGTTTGTTTATTGGC....................................................271.000.001.00-----------------------------
.............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTATTTC.....................................................2460.500.500.170.33----------------------------
.................................................................................................................................................................................TTTGTTTGTTTGTTTATTTCGAG..................................................2320.500.50-0.50----------------------------
................................................................................................................................................................................................ATTTCGAGATGGAGTTTCGCTCT...................................2350.400.40-0.40----------------------------
.......................................................................................................................................................................................TGTTTGTTTATTTCGAG..................................................1730.330.330.33-----------------------------
.............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTATTTCTGAG.................................................2860.330.500.33-----------------------------
.............................................................................................................................................................................TTTGTTTGTTTGTTTGTTTATTTCTG...................................................2660.170.50-0.17----------------------------
....................................................................................................................TCTATTGGATAGTGCTGC....................................................................................................................1890.110.11-----------------------------0.11

Antisense strand
TACTATGTTGGCCAGGCTAGTCTCGAACTCCTGACTTCAAGTGATCCTCCTGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCAGCCTCAGATTGTATTTCTATTGGATAGTGCTGCCCTAACTGGTTATTTATTTGTGTATGAAAGCTATTGATTTTTGTTTGTTTGTTTGTTTATTTCGAGATGGAGTTTCGCTCTTGTTGCCCAGTCTGGGGTACAATGGTGCAATCTTG
................................................................................................................((((((...(((((((....((...((((((((.(((((......)))))))))).........))).))....)))))))....))))))...............................................
...............................................................................................................112...........................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925PAZD5SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
..............GGCTAGTCTCGAACTCCTGAGGCC.................................................................................................................................................................................................................... 242.000.002.00-----------------------------
....................................................................................GTGAGCCACTGTGCCCAGCCTTAA.............................................................................................................................................. 242.000.00--2.00---------------------------
..........................ACTCCTGACTTCAAGTGATCCTCCTGCCTC.................................................................................................................................................................................................. 302.000.00-2.00----------------------------
..........................................GATCCTCCTGCCTTAGCCTCCCATCTC..................................................................................................................................................................................... 271.000.001.00-----------------------------
......TTCGAGACTAGCCTGGCCAAC............................................................................................................................................................................................................................... 2101.001.00---------------------1.00--------
.............................................CCTCCTGCCTTAGCCTCCCAAGCC..................................................................................................................................................................................... 241.000.00-1.00----------------------------
...........................CTCCTGACTTCAAGTGATCCTCTC....................................................................................................................................................................................................... 241.000.00-1.00----------------------------
.........GGCCAGGCTAGTCTCGAACGGC........................................................................................................................................................................................................................... 221.000.00----------------1.00-------------
.............................................CCTCCTGCCTTAGCCTCCCAAGGC..................................................................................................................................................................................... 241.000.00-1.00----------------------------
.................................................................................GGCGTGAGCCACTGTGCCCAGC................................................................................................................................................... 221.000.00-1.00----------------------------
............CAGGCTAGTCTCGAACTA............................................................................................................................................................................................................................ 181.000.00----1.00-------------------------
..................................................................................................................................................................................................................GCTCTTGTTGCCCAGTTCTG.................... 201.000.00-----------1.00------------------
..............GGCTAGTCTCGAACTCCTGGCC...................................................................................................................................................................................................................... 221.000.001.00-----------------------------
..............GGCTAGTCTCGAACTCCTGACTGGCC.................................................................................................................................................................................................................. 261.000.001.00-----------------------------
......................................................................................TGAGGCTGGGCACAGTGGCTC............................................................................................................................................... 2101.001.00-----------------------1.00------
.........................................................................................................................................................GTGTATGAAAGCTATGCCT.............................................................................. 191.000.00--------------------------1.00---
.............................................CCTCCTGCCTTAGCCTCCCAAAGTGC................................................................................................................................................................................... 261.000.001.00-----------------------------
......GAGTTCGAGACTAGCCTGGCCAAC............................................................................................................................................................................................................................ 2401.001.00------------1.00-----------------
.............................................CCTCCTGCCTTAGCCTCCCAAAGTGCG.................................................................................................................................................................................. 271.000.001.00-----------------------------
..........................................................................................................................................................................................................CAGACTGGGCAACAAGAGCGAAACTCC..................... 2701.001.00-------------1.00----------------
........................................GTGATCCTCCTGCCTTAGCCTCCCACCG...................................................................................................................................................................................... 281.000.00-1.00----------------------------
..............GGCTAGTCTCGAACTCCTAGTG...................................................................................................................................................................................................................... 221.000.00-1.00----------------------------
................................................................................................................................................................................................ATTTCGAGATGGAGTTTGA....................................... 191.000.00--------1.00---------------------
...................................................................................CGTGAGCCACTGTGCCCAGCCT................................................................................................................................................. 221.000.00-1.00----------------------------
.............AGGCTAGTCTCGAACTCCTGACTACCA.................................................................................................................................................................................................................. 271.000.00-1.00----------------------------
..........................................GATCCTCCTGCCTTAGCCTCCCAAAGTGGTT................................................................................................................................................................................. 311.000.00-1.00----------------------------
.....TGTTGGCCAGGCTAGTCTCGAACTAGAG......................................................................................................................................................................................................................... 281.000.00-------------------------1.00----
......................................................................................GAGCCACTGTGCCCAGCCTCCCGG............................................................................................................................................ 241.000.00-1.00----------------------------
.....TTCGAGACTAGCCTGGCCAACA............................................................................................................................................................................................................................... 2201.001.00-------1.00----------------------
....ATGTTGGCCAGGCTAGTCTCGAACGAG........................................................................................................................................................................................................................... 271.000.001.00-----------------------------
..............GGCTAGTCTCGAACTCCTGACTTCACACC............................................................................................................................................................................................................... 291.000.00-1.00----------------------------
..........................................................................................................................................................................AAACAAACAAACAAACAAAAAT.......................................................... 2201.001.00---1.00--------------------------
....................................................................................................................................................TATTTGTGTATGAAAGTATG.................................................................................. 201.000.00------1.00-----------------------
........TTCGAGACTAGCCTGGCCA............................................................................................................................................................................................................................... 1901.001.00------------------------1.00-----
...............................................................................................................................................................................................................TTCGCTCTTGTTGCCCAGTCTGCC................... 241.000.00----------1.00-------------------
.............................................................................................................................................................................................................GTTTCGCTCTTGTTGCCCAGTAA...................... 231.000.00-------------------1.00----------
.......................ATCACTTGAAGTCAGGAGTTCG............................................................................................................................................................................................................. 2201.001.00------------------1.00-----------
.........AGTTCGAGACTAGCCTGGCC............................................................................................................................................................................................................................. 2001.001.00---1.00--------------------------
......GTTGGCCAGGCTAGTCTTGAG............................................................................................................................................................................................................................... 211.000.00-1.00----------------------------
..............GGCTAGTCTCGAACTCCTGACTGACC.................................................................................................................................................................................................................. 261.000.00-1.00----------------------------
............CAGGCTAGTCTCGAACTCCT.......................................................................................................................................................................................................................... 201.000.00----------------------1.00-------