ID: uc010hey.2_intron_2_0_chr3_20012210_f.5p
GENE: (3)
chr3:20012160-20012409+


(7)
BRAIN 		(6)
BREAST 		(7)
CELL-LINE 		(3)
CERVIX 		(3)
HEART 		(1)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
TESTES 		(3)
UTERUS

Sense strand
AGCCAGAAAATAGACGTTTTGGATAAATTAAAGTGGTTTTACAGATTCAGGTAAGTTTGTGGTTGGTTAATGTTGCTACAGTATTGATGTAGTAGTTTTATCTTTTCAGTGGCAGAATTTGTTTACGTAACTTTATAAATTACTAGTAATGTATTTTTAGGAGCACTGAGGATTTGAAGATGTCACCTAAATGTCAGTTACACTTCACCGAGTTTTATAGGGGAAATTAAACACTGTAGTGGAATTTGGC
....................................................................................((((((.....(((((..((((((((.((..........(((((.(((............))).))))).........))))))))))..))))))))))).................................................................
...............................................................................80...........................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532879(GSM532879)
G659N. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532878(GSM532878)
G691T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR040043(GSM532928)
G428T. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)
....................................................................................TGATGTAGTAGTTTTTAT....................................................................................................................................................1810.000.001.008.00---------1.00--------------------------------
....................................................................................TGATGTAGTAGTTTTTGC....................................................................................................................................................187.000.00---4.00----------1.00----------------1.00---1.00--------
....................................................................................TGATGTAGTAGTTTTTA.....................................................................................................................................................176.000.00-----1.00----1.00---------------1.00---------1.00--1.00-1.00--
....................................................................................TGATGTAGTAGTTTTTATA...................................................................................................................................................194.000.001.002.00------------------1.00-----------------------
........................................................................................................TTCAGTGGCAGAATTCCCG...............................................................................................................................193.000.00----1.00--2.00------------------------------------
....................................................................................TGATGTAGTAGTTTTTG.....................................................................................................................................................173.000.00------------------1.001.00--1.00---------------------
....................................................................................TGATGTAGTAGTTTTTAG....................................................................................................................................................182.000.002.00-------------------------------------------
....................................................................................TGATGTAGTAGTTTTTAC....................................................................................................................................................182.000.00-1.00----------------------1.00-------------------
....................................................................................TGATGTAGTAGTTTTTATG...................................................................................................................................................192.000.002.00-------------------------------------------
....................................................................................TGATGTAGTAGTTTTTTG....................................................................................................................................................182.000.002.00-------------------------------------------
.......................................................................................................................................................................GAGGATTTGAAGATGTCA.................................................................1812.002.00------2.00-------------------------------------
...........................................................................................................................................................TTTAGGAGCACTGAGGATTTG..........................................................................2112.002.00---------2.00----------------------------------
....................................................................................TGATGTAGTAGTTTTTGCT...................................................................................................................................................192.000.00---------------1.00-----------1.00----------------
....................................................................................TGATGTAGTAGTTTTTACA...................................................................................................................................................192.000.002.00-------------------------------------------
...............................................................................................................................................................GGAGCACTGAGGATTTGAAGATGTCACCT..............................................................2911.001.00--1.00-----------------------------------------
.................................................................................................................................................................AGCACTGAGGATTTGCT........................................................................171.000.00--------1.00-----------------------------------
........................................................................................................TTCAGTGGCAGAATTCGCC...............................................................................................................................191.000.00----------------------------1.00---------------
....................................................................................TGATGTAGTAGTTTTTTCT...................................................................................................................................................191.000.001.00-------------------------------------------
....................................................................................TGATGTAGTAGTTTTTATT...................................................................................................................................................191.000.00-1.00------------------------------------------
....................................................................................TGATGTAGTAGTTTTTTC....................................................................................................................................................181.000.00-1.00------------------------------------------
...........................................................................CTACAGTATTGATGTTGTA............................................................................................................................................................191.000.00-----------1.00--------------------------------
...........................................................................................................................................................TTTAGGAGCACTGAGGATTTGAAGAT.....................................................................2611.001.00---------------------------------1.00----------
....................................................................................TGATGTAGTAGTTTTTTTA...................................................................................................................................................191.000.00-----1.00--------------------------------------
....................................................................................TGATGTAGTAGTTTTGTTG...................................................................................................................................................191.000.00-1.00------------------------------------------
....................................................................................TGATGTAGTAGTTTTGACA...................................................................................................................................................191.000.00----------------------------------------1.00---
.......................................................................................................................................................TATTTTTAGGAGCACTGAGGATCTG..........................................................................251.000.00------------------------------1.00-------------
....................................................................................TGATGTAGTAGTTTTGTGG...................................................................................................................................................191.000.00-----------------------1.00--------------------
.....................................................................................................................................................................CTGAGGATTTGAAGATGTCACCT..............................................................2311.001.00---------------------1.00----------------------
.........................................................................................................................................................................................................................TAGGGGAAATTAAACACTGTAGTG.........2411.001.00------------1.00-------------------------------
....................................................................................TGATGTAGTAGTTTTTGTT...................................................................................................................................................191.000.00-1.00------------------------------------------
....................................................................................TGATGTAGTAGTTTTCTGT...................................................................................................................................................191.000.00--------------------------------------1.00-----
....................................................................................TGATGTAGTAGTTTTGTTC...................................................................................................................................................191.000.00----------------------------------1.00---------
....................................................................................TGATGTAGTAGTTTTAGCT...................................................................................................................................................191.000.00-----1.00--------------------------------------
...............................................................................................................................................................GGAGCACTGAGGATTTGAAGATGTCAC................................................................2711.001.00--1.00-----------------------------------------
....................................................................................TGATGTAGTAGTTTTACAG...................................................................................................................................................191.000.00-------------------------1.00------------------
....................................................................................TGATGTAGTAGTTTTCAA....................................................................................................................................................181.000.001.00-------------------------------------------
....................................................................................................................................................................ACTGAGGATTTGAAGATGTC..................................................................2011.001.00-------------1.00------------------------------
....................................................................................TGATGTAGTAGTTTTTAAC...................................................................................................................................................191.000.00---1.00----------------------------------------
....................................................................................TGATGTAGTAGTTTTTCGG...................................................................................................................................................191.000.001.00-------------------------------------------
....................................................................................TGATGTAGTAGTTTTATAGTT.................................................................................................................................................211.000.001.00-------------------------------------------
.......................................................................................................................................................................GAGGATTTGAAGATGTCACCTAA............................................................2311.001.00--1.00-----------------------------------------
....................................................................................TGATGTAGTAGTTTTTT.....................................................................................................................................................171.000.00----------1.00---------------------------------
.............................................................................................................................................................................................................................GGAAATTAAACACTGTAGAGC........211.000.00--------1.00-----------------------------------
....................................................................................TGATGTAGTAGTTTTAACAG..................................................................................................................................................201.000.001.00-------------------------------------------
....................................................................................TGATGTAGTAGTTTTTCTA...................................................................................................................................................191.000.00----------------1.00---------------------------
............................................................................TACAGTATTGATGTAGTAGTT.........................................................................................................................................................2111.001.00--1.00-----------------------------------------
....................................................................................TGATGTAGTAGTTTTGATA...................................................................................................................................................191.000.001.00-------------------------------------------
.............................................................................................................................................................................................................................GGAAATTAAACACTGTAGCTCC.......221.000.00-------------------------------------1.00------
....................................................................................TGATGTAGTAGTTTTACATT..................................................................................................................................................201.000.00-----------------------------1.00--------------
......................................................................................................................................................................TGAGGATTTGAAGATGTGGCC...............................................................211.000.00--1.00-----------------------------------------
........AATAGACGTTTTGGATAAATTAAAGT........................................................................................................................................................................................................................2620.500.50--0.50-----------------------------------------
...........AGACGTTTTGGATAAATTAAAGTGGT.....................................................................................................................................................................................................................2620.500.50-------------------------------------------0.50
........AATAGACGTTTTGGATAAATTAAAGTGG......................................................................................................................................................................................................................2820.500.50------------------------------------------0.50-
.......AAATAGACGTTTTGGA...................................................................................................................................................................................................................................1630.330.33------------0.33-------------------------------

Antisense strand
AGCCAGAAAATAGACGTTTTGGATAAATTAAAGTGGTTTTACAGATTCAGGTAAGTTTGTGGTTGGTTAATGTTGCTACAGTATTGATGTAGTAGTTTTATCTTTTCAGTGGCAGAATTTGTTTACGTAACTTTATAAATTACTAGTAATGTATTTTTAGGAGCACTGAGGATTTGAAGATGTCACCTAAATGTCAGTTACACTTCACCGAGTTTTATAGGGGAAATTAAACACTGTAGTGGAATTTGGC
....................................................................................((((((.....(((((..((((((((.((..........(((((.(((............))).))))).........))))))))))..))))))))))).................................................................
...............................................................................80...........................................................................................................189...........................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532879(GSM532879)
G659N. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532878(GSM532878)
G691T. (cervix)		TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR189785TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR040043(GSM532928)
G428T. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)
........................AAATTAAAGTGGTTTGTTA............................................................................................................................................................................................................... 191.000.00----1.00---------------------------------------
...................................GTTTTACAGATTCAGGTCTG................................................................................................................................................................................................... 201.000.00-----------------1.00--------------------------
...................TGGATAAATTAAAGTCTG..................................................................................................................................................................................................................... 181.000.001.00-------------------------------------------
........................AAATTAAAGTGGTTTTTTA............................................................................................................................................................................................................... 191.000.00----1.00---------------------------------------
...................................GTTTTACAGATTCAGTCTG.................................................................................................................................................................................................... 191.000.00--------------------------------1.00-----------
......................ATAAATTAAAGTGGTTTTATT............................................................................................................................................................................................................... 211.000.00----1.00---------------------------------------