ID: uc010fgl.2_intron_0_0_chr2_85767124_f.5p
GENE: MAT2A(1)
chr2:85767074-85767323+


(1)
AGO1.ip
(1)
AGO2.ip
(3)
B-CELL
(3)
BRAIN
(1)
BREAST
(12)
CELL-LINE
(3)
HEART
(3)
HELA
(4)
LIVER
(3)
OTHER
(9)
SKIN
(1)
XRN.ip

Sense strand
CACTGGAGAATACGCACATGCCCTTCGGCGGATATGGCCTTGCCTCCAAGGTGACGGCCTCTGACTAAATATAGCTCATGTCCAAGAAGGCAGTCCTTATTTGGACCCCTTGTGAAAAGGATGGGAAGCATGAATTAGGAGCTGCCATTGCTTTGGGTTCGCATTTAAAGTCTTCGGTGCAGGGTTTTACTTGAGGCTTTGTCCGCTCAACCGCCATTATGGGGATCAATTGGCACGTGAAGGAGGAGTA
...................................................................................................................................((((..(((((.......)))))..))))((((..((....))..))))......................................................................
...........................................................................................................................124......................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
................................................................................................................................CATGAATTAGGAGCTGCCATTGC...................................................................................................2317.007.005.00-----2.00-----------------------------------
..............................................................................................................................................................TCGCATTTAAAGTCTTCGG.........................................................................1916.006.00--6.00---------------------------------------
....GGAGAATACGCACATGCCCTTCG...............................................................................................................................................................................................................................2315.005.005.00-----------------------------------------
...............................................................................................................GTGAAAAGGATGGGAAGCATG......................................................................................................................2113.003.00-------2.00-------1.00--------------------------
................................................AGGTGACGGCCTCTGACT........................................................................................................................................................................................1813.003.00---3.00--------------------------------------
......................................................................................................................GGATGGGAAGCATGAATTAGG...............................................................................................................2112.002.00-----2.00------------------------------------
....................................................................................................................AAGGATGGGAAGCATGAATTAGGA..............................................................................................................2412.002.002.00-----------------------------------------
................................................AGGTGACGGCCTCTGAAA........................................................................................................................................................................................182.000.00---2.00--------------------------------------
........................................................GCCTCTGACTAAATATAGCTC.............................................................................................................................................................................2112.002.00----------2.00-------------------------------
.........................................................................................................................................................................................................................TATGGGGATCAATTGGCACGTGAAA........252.000.002.00-----------------------------------------
...............................................AAGGTGACGGCCTCTGACTA.......................................................................................................................................................................................2011.001.00--------------------------------1.00---------
...................................................................................................................AAAGGATGGGAAGCATGAATTAG................................................................................................................2311.001.00---------------------------------1.00--------
.....................................................................................................................AGGATGGGAAGCATGAATTAGGAG.............................................................................................................2411.001.00-1.00----------------------------------------
......................................................................................................................................................................................................................................TGGCACGTGAAGGAGGAG..1811.001.00-------------------1.00----------------------
.....................................................................................................................................ATTAGGAGCTGCCATTGCTTTGGGTCCGC........................................................................................291.000.00------------------------1.00-----------------
....................................................................................................................................................................................................................................ATTGGCACGTGAAGGAGGAGTA2211.001.00--------------------------------------1.00---
............................................................................................................CTTGTGAAAAGGATGGGAAGCA........................................................................................................................2211.001.001.00-----------------------------------------
....GGAGAATACGCACATGCCCTTCGGCGG...........................................................................................................................................................................................................................2711.001.00---------------------------1.00--------------
.....................CCTTCGGCGGATATGGCCTTGCCTCC...........................................................................................................................................................................................................2611.001.00-----------------1.00------------------------
.....................................................................................................................................................................TAAAGTCTTCGGTGCAGG...................................................................1811.001.001.00-----------------------------------------
................................................................................................................TGAAAAGGATGGGAAGCATGAATTAGGA..............................................................................................................2811.001.00-1.00----------------------------------------
......................................................................................................................................................................................................................CATTATGGGGATCAATTGG.................1911.001.00--------1.00---------------------------------
....................................................................................................................AAGGATGGGAAGCATGA.....................................................................................................................1711.001.001.00-----------------------------------------
...........................GCGGATATGGCCTTGGGG.............................................................................................................................................................................................................181.000.00---------------------------------------1.00--
....................................................................................................................................................................................................................................ATTGGCACGTGAAGGAGGAATG221.000.00-----1.00------------------------------------
...............................................................................................................................GCATGAATTAGGAGCTG..........................................................................................................1711.001.00----------------------------------1.00-------
.....................................................................................................................................ATTAGGAGCTGCCATTGCTTTGGGTTCGC........................................................................................2911.001.00-----------------------1.00------------------
.............................................................TGACTAAATATAGCTCATGTCCAAGAAGGC...............................................................................................................................................................3011.001.00-------------------------1.00----------------
.................................................................................................................GAAAAGGATGGGAAGCATGAA....................................................................................................................2111.001.00--------------------1.00---------------------
..........................................................................................................................GGGAAGCATGAATTAGGAGCTGCCA.......................................................................................................2511.001.00------------------------------1.00-----------
..........................................................................CTCATGTCCAAGAAGGC...............................................................................................................................................................1711.001.00------------------------------------1.00-----
..................................................................................................................AAAAGGATGGGAAGCATG......................................................................................................................1811.001.00-----------------------------1.00------------
.................................................................................................................GAAAAGGATGGGAAGCATGAATTAGGAGC............................................................................................................2911.001.00--------------1.00---------------------------
...............................................................................................................................................................CGCATTTAAAGTCTTCGG.........................................................................1811.001.00--------1.00---------------------------------
...............................................................................................................................................................................................TGAGGCTTTGTCCGCTCAACCGCC...................................2411.001.00-1.00----------------------------------------
...................................................................................................................AAAGGATGGGAAGCATGAATT..................................................................................................................2111.001.00----------------------1.00-------------------
...TGGAGAATACGCACATGCCC...................................................................................................................................................................................................................................2011.001.00-----1.00------------------------------------
..........................................CCTCCAAGGTGACGGCCTCTGACTA.......................................................................................................................................................................................2511.001.00-1.00----------------------------------------
..............................................CAAGGTGACGGCCTCTGACTAAATAT..................................................................................................................................................................................2611.001.00-1.00----------------------------------------
........................................................................................................................ATGGGAAGCATGAATTAGGAG.............................................................................................................2111.001.00-------------------------------------1.00----
..........................................CCTCCAAGGTGACGGCCTCTGA..........................................................................................................................................................................................2211.001.00-1.00----------------------------------------
...................................................................................................................AAAGGATGGGAAGCATGAATTAGGAGCTGC.........................................................................................................3011.001.00---------1.00--------------------------------
................................................AGGTGACGGCCTCTGACTA.......................................................................................................................................................................................1911.001.001.00-----------------------------------------
............................................................................................................CTTGTGAAAAGGATGGGAAGC.........................................................................................................................2111.001.001.00-----------------------------------------
....................................................................................................................AAGGATGGGAAGCATGAATTAGGAG.............................................................................................................2511.001.00-1.00----------------------------------------
...........................................................................................................................................................................................................................TGGGGATCAATTGGCACGTGAAGGAGGAG..2911.001.00---------1.00--------------------------------
.....................CCTTCGGCGGATATG......................................................................................................................................................................................................................1511.001.00----------------------------------------1.00-
...............................................................................................................................GCATGAATTAGGAGCTGC.........................................................................................................1811.001.00--------------------------1.00---------------
........................................................................................................................................................................AGTCTTCGGTGCAGGGTTTTACTTGAG.......................................................2711.001.00-----------------------------------1.00------
.....................................................................................................................AGGATGGGAAGCATGAATTAGGAGCT...........................................................................................................2611.001.00-1.00----------------------------------------
...............................................AAGGTGACGGCCTCTGCC.........................................................................................................................................................................................181.000.00----------------1.00-------------------------

Antisense strand
CACTGGAGAATACGCACATGCCCTTCGGCGGATATGGCCTTGCCTCCAAGGTGACGGCCTCTGACTAAATATAGCTCATGTCCAAGAAGGCAGTCCTTATTTGGACCCCTTGTGAAAAGGATGGGAAGCATGAATTAGGAGCTGCCATTGCTTTGGGTTCGCATTTAAAGTCTTCGGTGCAGGGTTTTACTTGAGGCTTTGTCCGCTCAACCGCCATTATGGGGATCAATTGGCACGTGAAGGAGGAGTA
...................................................................................................................................((((..(((((.......)))))..))))((((..((....))..))))......................................................................
...........................................................................................................................124......................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
.......................................................................................................................................................................................GGCGGTTGAGCGGACAAAGCCTCAAGTAAAAC................................... 3213.003.00----3.00-------------------------------------
.................................................................................................................................................................................GCGGACAAAGCCTCAAGTAAAACCCTGCA............................................ 2911.001.00-----------1.00------------------------------
............................................................................................................................................................................................TGGCGGTTGAGCGGACAAAGCCTCAAGT.................................. 2811.001.00----1.00-------------------------------------
................................................AGGTGACGGCCTCTGAGCC....................................................................................................................................................................................... 191.000.00---------------------1.00--------------------
.........................................................TGAGCTATATTTAGTCAGAGG............................................................................................................................................................................ 2111.001.00----------------------------1.00-------------
.......................................................................................TCCAAATAAGGACTGCCT................................................................................................................................................. 1811.001.00-------------------------------1.00----------
........TCCGCCGAAGGGCATGTGCGTATT.......................................................................................................................................................................................................................... 2411.001.00------------1.00-----------------------------
...........................................................................................................................................................................AACCCTGCACCGAAG................................................................ 1540.250.25-----------------------------------------0.25