ID: uc010fci.2_intron_16_0_chr2_61239041_r.5p
GENE: (1)
chr2:61244084-61244333-


(7)
B-CELL 		(2)
BRAIN 		(11)
BREAST 		(18)
CELL-LINE 		(8)
CERVIX 		(1)
FIBROBLAST 		(3)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(10)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CGGAAGGGGTTAAATCTCAGGCTCCGGCGTCTGGGGAGAAGGTGAGGCGGGTAGGTAAGAGGTGAAGGAGTGCAGACTGGGTGCAAAAGAGGTGTGGCGGGAGAGAGTTCGTTTCTCTCCTGCTGGAGCGGCTTTGTTAGCAAAGGAGGGGTGAGTGGGAAGTTTGTTGCACCTGACCGAAGGGGGAAGGGCTTGCTTGGCGAAAACTGAGGCTTGAGGTTAGATCTCGGGATGAACTTTTCAAGAGTCC
.....................................................................((.((.(((............))).)))).((((((((.....))))))))..................................................................................................................................
..................................................51...................................................................120................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)
....................................................AGGTAAGAGGTGAAGGAG....................................................................................................................................................................................1817.007.00---2.00---1.00-------2.00--------------------1.00----------------1.00----------
.................................................................AGGAGTGCAGACTGGGTG.......................................................................................................................................................................1815.005.00---1.00-----2.00------------------1.00-----1.00-----------------------------
.......................................................................GCAGACTGGGTGCAAAAGAGG..............................................................................................................................................................2114.004.00-3.00----------------1.00---------------------------------------------
.............................................................GTGAAGGAGTGCAGAAAG...........................................................................................................................................................................184.000.00----2.00-----1.00---------------------1.00-------------------------------
............................................AGGCGGGTAGGTAAGAGG............................................................................................................................................................................................1813.003.00---1.00--1.00-----------------1.00---------------------------------------
.......................................................................GCAGACTGGGTGCAAAAGAG...............................................................................................................................................................2013.003.003.00---------------------------------------------------------------
........................................................................................................................................................................................................................AGGTTAGATCTCGGGATG................1813.003.002.00---------------------1.00-----------------------------------------
.......................................................................................................................................................................................................GCGAAAACTGAGGCTTGA.................................1813.003.00-----3.00----------------------------------------------------------
................................................................AAGGAGTGCAGACTGGGTGC......................................................................................................................................................................2012.002.00-2.00--------------------------------------------------------------
.....................................................................GTGCAGACTGGGTGCAAAAG.................................................................................................................................................................2012.002.00-2.00--------------------------------------------------------------
........................................................AAGAGGTGAAGGAGTGCAGACTGGGCG.......................................................................................................................................................................272.000.00--2.00-------------------------------------------------------------
........................................................................CAGACTGGGTGCAAAAGAGGTG............................................................................................................................................................2212.002.001.00----------------------------------------1.00----------------------
...........................................................................................................................................................................................................................TTAGATCTCGGGATGAACTTT..........2111.001.00-------------------1.00--------------------------------------------
.........................................................AGAGGTGAAGGAGTGCAGACTGGGTGC......................................................................................................................................................................2711.001.00----1.00-----------------------------------------------------------
........................................................................................................GAGTTCGTTTCTCTCCTGCTGGAGCGGC......................................................................................................................2811.001.00-----------------------1.00----------------------------------------
......................................AAGGTGAGGCGGGTAGGTAAG...............................................................................................................................................................................................2111.001.00-----------1.00----------------------------------------------------
....................................................AGGTAAGAGGTGAAGGAGTG..................................................................................................................................................................................2011.001.00------------------------------1.00---------------------------------
.........................................................AGAGGTGAAGGAGTGCAGACTGGGCGCA.....................................................................................................................................................................281.000.00--1.00-------------------------------------------------------------
...........................................................AGGTGAAGGAGTGCAGACTGGGCGC......................................................................................................................................................................251.000.00----------------1.00-----------------------------------------------
......................................AAGGTGAGGCGGGTAGGTAA................................................................................................................................................................................................2011.001.00-------------------------------1.00--------------------------------
.........................................................................AGACTGGGTGCAAAAGAG...............................................................................................................................................................1811.001.00---------------------1.00------------------------------------------
...................................GAGAAGGTGAGGCGGGTAGGT..................................................................................................................................................................................................2111.001.00------1.00---------------------------------------------------------
....................................................................................................GAGAGAGTTCGTTTCTTC....................................................................................................................................181.000.00-------------1.00--------------------------------------------------
.........................................................................AGACTGGGTGCAAAAGAGGTGTGGC........................................................................................................................................................2511.001.00----------------------------------------1.00-----------------------
.......................................................................................AGAGGTGTGGCGGGATAT.................................................................................................................................................181.000.00-------------------------------------------------1.00--------------
.................................................................................................................................................................................................................................CTCGGGATGAACTTTTCAAGA....2111.001.00-----------------1.00----------------------------------------------
.........................................................................AGACTGGGTGCAAAAGAGGT.............................................................................................................................................................2011.001.00------1.00---------------------------------------------------------
............................................................................................................................................................GGGAAGTTTGTTGCACC.............................................................................1711.001.00--------------------------------------------1.00-------------------
......................................................GTAAGAGGTGAAGGAGTG..................................................................................................................................................................................1811.001.00--------------1.00-------------------------------------------------
................................................................................GTGCAAAAGAGGTGTGGC........................................................................................................................................................1811.001.00-------------------------------------------1.00--------------------
........................CGGCGTCTGGGGAGAAGG................................................................................................................................................................................................................1811.001.00---------------------------------------------------1.00------------
........................CGGCGTCTGGGGAGAAGGTGAG............................................................................................................................................................................................................2211.001.00--------------------------------------------------1.00-------------
...............................................................................................................................................................................ACCGAAGGGGGAAGGGCTTG.......................................................2011.001.00--------------1.00-------------------------------------------------
......................................................................................AAGAGGTGTGGCGGGAGAGAGT..............................................................................................................................................2211.001.00--------------------------------------------------------1.00-------
.........................................................AGAGGTGAAGGAGTGCAGCTC............................................................................................................................................................................211.000.00-----------------------------------------------------------1.00----
..........................................................................................................GTTCGTTTCTCTCCTGCTG.............................................................................................................................1911.001.00--------------------------------------1.00-------------------------
..............................................................................................................................................................................................................CTGAGGCTTGAGGTTAGAT.........................1911.001.00------------------------------------------------------1.00---------
...........................................................................................................................................................................................................AAACTGAGGCTTGAGGTTAGATCTCG.....................2611.001.00---------------------------------------------------------1.00------
.............................................................GTGAAGGAGTGCAGAAAGA..........................................................................................................................................................................191.000.00----1.00-----------------------------------------------------------
...............................................................................................................................................................................................................TGAGGCTTGAGGTTATCAG........................191.000.00-------------------------------------1.00--------------------------
......................................................................................................................................................................................................................................GATGAACTTTTCAAGGAGC.191.000.00---------------------------------1.00------------------------------
............................................AGGCGGGTAGGTAAGAGGTGAAGT......................................................................................................................................................................................241.000.001.00---------------------------------------------------------------
.........................GGCGTCTGGGGAGAAAAA...............................................................................................................................................................................................................181.000.00-------------1.00--------------------------------------------------
.......................................................................................................................CTGCTGGAGCGGCTTTGTTAGC.............................................................................................................2211.001.00-----------------------------------------------1.00----------------
.........................................................................................................................................................................CACCTGACCGAAGGGGGAAGGGC..........................................................2311.001.00----------------1.00-----------------------------------------------
......................TCCGGCGTCTGGGGAGAAGGTG..............................................................................................................................................................................................................2211.001.00--------1.00-------------------------------------------------------
...............................................CGGGTAGGTAAGAGGTGAAG.......................................................................................................................................................................................2011.001.00--------1.00-------------------------------------------------------
...............................................CGGGTAGGTAAGAGGTGAAGGAGTG..................................................................................................................................................................................2511.001.001.00---------------------------------------------------------------
.......................................................................................AGAGGTGTGGCGGGACT..................................................................................................................................................171.000.00--1.00-------------------------------------------------------------
...................................................................................................................................................................TTGTTGCACCTGACCGAAGGGGGA...............................................................2411.001.00-----------------1.00----------------------------------------------
...........................................................................................................TTCGTTTCTCTCCTGCTGGAGCGGC......................................................................................................................2511.001.00------------------------------------------------------------1.00---
...............................................................................................................................................................................................................................ATCTCGGGATGAACTTT..........1711.001.00--------------------------------------------------------------1.00-
....................................................................................AAAAGAGGTGTGGCGGG.....................................................................................................................................................1711.001.00------------------1.00---------------------------------------------
.......................................................................................................................................................TGAGTGGGAAGTTTGGAT.................................................................................181.000.00-----------------------------1.00----------------------------------
..........................................................................................................................................................GTGGGAAGTTTGTTGCACCTGACC........................................................................2411.001.00---------------------------------------1.00------------------------
........................................................................CAGACTGGGTGCAAAAGAGGTGTGGCGGGAG...................................................................................................................................................3111.001.00-----------1.00----------------------------------------------------
.....................................................................GTGCAGACTGGGTGCAAAAGAAAA.............................................................................................................................................................241.000.00--------1.00-------------------------------------------------------
...............................................................................................................................................AGGAGGGGTGAGTGGGAAGT.......................................................................................2011.001.00----------------------------------------------1.00-----------------
...........................................................AGGTGAAGGAGTGCAGACTGGGCG.......................................................................................................................................................................241.000.00--1.00-------------------------------------------------------------
...............................................................GAAGGAGTGCAGACTGGGTGCAAAAGAGGTG............................................................................................................................................................3111.001.00-------------------------------------------------------1.00--------
......................................................................................................GAGAGTTCGTTTCTCT....................................................................................................................................1611.001.00----------------------------------------------------------1.00-----
............................................AGGCGGGTAGGTAAGTCAG...........................................................................................................................................................................................191.000.00-------------------------1.00--------------------------------------
..............................CTGGGGAGAAGGTGAGGCGG........................................................................................................................................................................................................2011.001.00-------------------------------------------------------------1.00--
................................................................................................GCGGGAGAGAGTTCGTTT........................................................................................................................................1811.001.00---------------------------------------------------------------1.00
...........................................................................................GTGTGGCGGGAGAGAGTT.............................................................................................................................................1820.500.50--------------------0.50-------------------------------------------

Antisense strand
CGGAAGGGGTTAAATCTCAGGCTCCGGCGTCTGGGGAGAAGGTGAGGCGGGTAGGTAAGAGGTGAAGGAGTGCAGACTGGGTGCAAAAGAGGTGTGGCGGGAGAGAGTTCGTTTCTCTCCTGCTGGAGCGGCTTTGTTAGCAAAGGAGGGGTGAGTGGGAAGTTTGTTGCACCTGACCGAAGGGGGAAGGGCTTGCTTGGCGAAAACTGAGGCTTGAGGTTAGATCTCGGGATGAACTTTTCAAGAGTCC
.....................................................................((.((.(((............))).)))).((((((((.....))))))))..................................................................................................................................
..................................................51...................................................................120................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR040040(GSM532925)
G612N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		GSM339994(GSM339994)
hues6. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)		SRR191635(GSM715745)
9genomic small RNA (size selected RNA from to. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040015(GSM532900)
G623T. (cervix)
.........................................................................................................CAGCAGGAGAGAAACGAACT............................................................................................................................. 2012.002.00------------2.00---------------------------------------------------
.......................................................................................................CGCTCCAGCAGGAGAGAAACGAACTCT........................................................................................................................ 2711.001.00-------1.00--------------------------------------------------------
.....................................................................................................GCAGGAGAGAAACGAACTCTCT............................................................................................................................... 2211.001.00-------1.00--------------------------------------------------------
........................CGGCGTCTGGGGAGAAGA................................................................................................................................................................................................................ 181.000.00----------1.00-----------------------------------------------------
........................CGGCGTCTGGGGAGAAGAGG.............................................................................................................................................................................................................. 201.000.00------------------------------------------1.00---------------------
..............................................................................................AACGAACTCTCTCCCGCCA......................................................................................................................................... 1911.001.00----------------------------------------------------1.00-----------
...................................................................................................................................................................................................................CCCGAGATCTAACCTCAAGC................... 2011.001.00-1.00--------------------------------------------------------------
....................................................................................................................................................GGGTGAGTGGGAAGTTGCTT.................................................................................. 201.000.00---------------------------1.00------------------------------------
.......................................................................................................CAGGAGAGAAACGAACTCT................................................................................................................................ 1911.001.001.00---------------------------------------------------------------
..........................................................................................................CAGCAGGAGAGAAACGAAC............................................................................................................................. 1911.001.00--------------------------1.00-------------------------------------
.............................................................................................AAACGAACTCTCTCCCGCCAC........................................................................................................................................ 2111.001.00---------------------------------------------1.00------------------
.........................................................................................................GCAGGAGAGAAACGAACT............................................................................................................................... 1821.001.00--------------------1.00-------------------------------------------
..................................................................................................................GCCGCTCCAGCAGGAGAG...................................................................................................................... 1811.001.00------------------------------------------------1.00---------------
.........CCCAGACGCCGGAGCCTGAGATTTAA....................................................................................................................................................................................................................... 2611.001.00-------------------1.00--------------------------------------------
........................CGGCGTCTGGGGAGAAGAT............................................................................................................................................................................................................... 191.000.00-----------------------------------1.00----------------------------