ID: uc010exg.1_intron_4_0_chr2_10583440_r
GENE: ODC1(7)
chr2:10583390-10583665-


(1)
AGO2.ip 		(2)
B-CELL 		(7)
BREAST 		(21)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(2)
XRN.ip

Sense strand
AGACCTTCGTGCAGGCAATCTCTGATGCCCGCTGTGTTTTTGACATGGGGGTGAGTATACGTGACCCTGTTAGGGAAGGGCGGGACACAACTGACAATAACTAGTCTTAATTCTAGAGTTAACTTTTTATGGCAGTTGGTTCTGTATTACATGGGTTTCAGCCTATCTGCTGCATACATTTTTGTTATTAGCTGTGGATCTGGCTGACTTATTTTCTTGATTCTAGGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTGGCTTTCC
...................................................................................................................................((((......)))).....(((((..((((((.((((((.((..(((....))).....)).))))))..)))))))))))................................................................
..........................................................................................................................123....................................................................................................226................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782TAX577580(Rovira)
total RNA. (breast)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................................................................................................................................................................CTGGCTGACTTATTTTCTTGATTCTAGA.................................................2815.001.005.00----------------------------------------------
................................................GGGTGAGTATACGTGGGAA.................................................................................................................................................................................................................194.000.00---4.00-------------------------------------------
.......................................................................................................................................................................................................CTGGCTGACTTATTTTCTTGATTCTAGAA................................................2914.001.00-------------------------1.00-------1.00-1.00-----1.00-----
..ACCTTCGTGCAGGCA...................................................................................................................................................................................................................................................................1513.003.00--3.00--------------------------------------------
..........................................................................................................................................................................................................GCTGACTTATTTTCTTGATTCTAGAA................................................2613.002.00---------2.00---1.00---------------------------------
..........................................................................................................................................................................................................GCTGACTTATTTTCTTGATTCTAG..................................................2412.002.00----------------1.00----1.00-------------------------
...........................................................................................................................................................................................................CTGACTTATTTTCTTGATTCTAGAA................................................2512.002.001.00-------------1.00--------------------------------
.................................................................................................................................................................................................................................................AGCATGTATCTGCTTGATATTGGCG..........2512.002.00-----2.00-----------------------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTCTTT...............................................................................................................................222.000.00-------------------------------------1.00-----1.00---
..........GCAGGCAATCTCTGATGCCC......................................................................................................................................................................................................................................................2012.002.00------------2.00----------------------------------
...............................................................................................................................................................................................................CTTATTTTCTTGATTCTAG..................................................1912.002.00----------2.00------------------------------------
...........................................................................................................................................................................................................CTGACTTATTTTCTTGATTCTAG..................................................2312.002.00----------------1.00---1.00--------------------------
......................................................................................................................................................................................................TCTGGCTGACTTATTTTCTTGATTCTAGAA................................................302.000.00----2.00------------------------------------------
........................................................................................................................................................................................TTATTAGCTGTGGATCAC..........................................................................181.000.00-----------1.00-----------------------------------
........................................................................................................................................................................................................TGGCTGACTTATTTTCTTGATTCTAGA.................................................2711.001.00-------------1.00---------------------------------
...........................................................................................................................................................................................TTAGCTGTGGATCTGGCTGACTTA.................................................................2411.001.00--------------------------1.00--------------------
........................................................................................................................................................................................................TGGCTGACTTATTTTCTTGATTCTAG..................................................2611.001.00----------------------------------------1.00------
................AATCTCTGATGCCCGCTGTGTTT.............................................................................................................................................................................................................................................2311.001.00---------------------------------------1.00-------
.........................................................................................................................................................................................TATTAGCTGTGGATCACTC........................................................................191.000.00---------------------------1.00-------------------
...............................................................................................................................TATGGCAGTTGGTTCTATAA.................................................................................................................................201.000.00------1.00----------------------------------------
...............................................................ACCCTGTTAGGGAAGGG....................................................................................................................................................................................................1711.001.00-------------------1.00---------------------------
.......................................................................................................................................................................................................CTGGCTGACTTATTTTCTTGATTCTAGAG................................................2911.001.00----1.00------------------------------------------
...................................................................................................................................GCAGTTGGTTCTGTATCA...............................................................................................................................181.000.00------------------------------------1.00----------
.......................................................................................................................................................................................................CTGGCTGACTTATTTTCTTGATTCTAG..................................................2711.001.00----1.00------------------------------------------
.......................................................................................................................................................................................................CTGGCTGACTTATTTTCTTGAAGA.....................................................241.000.001.00----------------------------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTGGTT...............................................................................................................................221.000.00-------1.00---------------------------------------
..ACCTTCGTGCAGGCAATCT...............................................................................................................................................................................................................................................................1911.001.00-----------------1.00-----------------------------
................................................................................................................................................................................................................................................CAGCATGTATCTGCTTGATATTGG............2411.001.00----------------------1.00------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTCGT................................................................................................................................211.000.00-------1.00---------------------------------------
..........................GCCCGCTGTGTTTTTGACAT......................................................................................................................................................................................................................................2011.001.00--------------------------------1.00--------------
...............................................................................................................................TATGGCAGTTGGTTCTGTGTCT...............................................................................................................................221.000.00--------1.00--------------------------------------
...............................................................................................................................................................................................................................................TCAGCATGTATCTGCTTG...................1811.001.00----------------------------------1.00------------
...............................................................................................................................TATGGCAGTTGGTTCTGTCTGT...............................................................................................................................221.000.00------------------------------1.00----------------
..............GCAATCTCTGATGCCCGCTG..................................................................................................................................................................................................................................................2011.001.00-----------------------------1.00-----------------
.............................................................................................................................................................................................................GACTTATTTTCTTGATTCTAG..................................................2111.001.00------------------------------------------1.00----
....................................................................................................................................CAGTTGGTTCTGTATTACTCTG..........................................................................................................................221.000.00--1.00--------------------------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTCG.................................................................................................................................201.000.00------1.00----------------------------------------
.....................................................................................................................................................................................................................................GAGGTTGGTTTCAGCTATA............................191.000.00-----------------1.00-----------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTATGT...............................................................................................................................221.000.00---------------1.00-------------------------------
.......CGTGCAGGCAATCTCTGATGC........................................................................................................................................................................................................................................................2111.001.00-----1.00-----------------------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTATAT...............................................................................................................................221.000.00---------------1.00-------------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTCGGT...............................................................................................................................221.000.00--------1.00--------------------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTGTTT...............................................................................................................................221.000.00--------------------------------------------1.00--
..............................................................................................................................................................................................................ACTTATTTTCTTGATTACAG..................................................201.000.00------1.00----------------------------------------
..........................................................................................................................................................................................................GCTGACTTATTTTCTTGATTCTAGA.................................................2511.002.00-----------------------1.00-----------------------
...................................................................TGTTAGGGAAGGGCGGGA...............................................................................................................................................................................................1811.001.00------------------------1.00----------------------
........................................................................................................................................................................................................................................GTTGGTTTCAGCATGTATCTGCTTGAT.................2711.001.001.00----------------------------------------------
...............................................................................................................................TATGGCAGTTGGTTCTGTATTTT..............................................................................................................................231.000.00--------------------------------------1.00--------
.....................................................................................................................................AGTTGGTTCTGTATTA...............................................................................................................................1630.670.67------------------0.67----------------------------
..................................TGTTTTTGACATGGGG..................................................................................................................................................................................................................................1620.500.50-------------------0.50---------------------------
....................................................................................................................................................................................................................................TGAGGTTGGTTTCAGC................................1630.330.33---------------------------------------------0.33-

Antisense strand
AGACCTTCGTGCAGGCAATCTCTGATGCCCGCTGTGTTTTTGACATGGGGGTGAGTATACGTGACCCTGTTAGGGAAGGGCGGGACACAACTGACAATAACTAGTCTTAATTCTAGAGTTAACTTTTTATGGCAGTTGGTTCTGTATTACATGGGTTTCAGCCTATCTGCTGCATACATTTTTGTTATTAGCTGTGGATCTGGCTGACTTATTTTCTTGATTCTAGGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTGGCTTTCC
...................................................................................................................................((((......)))).....(((((..((((((.((((((.((..(((....))).....)).))))))..)))))))))))................................................................
..........................................................................................................................123....................................................................................................226................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189782TAX577580(Rovira)
total RNA. (breast)		SRR189787SRR029129(GSM416758)
SW480. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029124(GSM416753)
HeLa. (hela)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR029126(GSM416755)
143B. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................................................................................TATTTTCTTGATTCTATTG................................................ 192.000.00-1.00--------------------------1.00------------------
................................................................................................................................................................................................................TTATTTTCTTGATTCTATG................................................. 191.000.00-1.00---------------------------------------------
.....................................................................TCCCGCCCTTCCCTAA............................................................................................................................................................................................... 1611.001.00------------------1.00----------------------------
.....................................................................................................................................................................................................................................................TGTATCTGCTTGATATTGGG........... 201.000.00-1.00---------------------------------------------
..............GCAATCTCTGATGCCAACA................................................................................................................................................................................................................................................... 191.000.00-----------1.00-----------------------------------
.................................................................................................................................................................................................................TATTTTCTTGATTCTAGTTTC.............................................. 211.000.00-1.00---------------------------------------------
..................................................................................................................................................................................................................................................CAAGCAGATACATGC................... 1570.140.14----------------------------------------------0.14