ID: uc010eet.2_intron_0_0_chr19_36706058_f.5p
GENE: (1)
chr19:36706008-36706257+


(1)
AGO2.ip 		(9)
B-CELL 		(3)
BRAIN 		(15)
BREAST 		(31)
CELL-LINE 		(8)
CERVIX 		(2)
FIBROBLAST 		(5)
HEART 		(6)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(19)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GAGTGCGCAAGCGCAGCGCACCGAGTGGACATTTTGGTCTTTGTCCGCGGGTCAGTACGGCCCCTGGGTCCACGTGGCGCGAAAGTAGGAGGTGGGATCTGGGCGTCTCGGGTCGGTCGGACCGGGGAGGTTAAAGGGGAGGATTCCTGATCTTTAGGGGCGCGGCGCGAGGGCAGGGAGTGGGTGTAAGAGCTTCTGGCCTACGTGCGGGGCGGAGATGGGGGCCTCTGAGGCGGGTTTGAGCGAGTGT
......................................................................................................((.((((.((((.....)))).)))).))((((((..(((...)))..))))))..............................................................................................
....................................................................................................101..........................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040016(GSM532901)
G645N. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029126(GSM416755)
143B. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM532886(GSM532886)
G850T. (cervix)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
..................................................................................................................................................................................................................GGCGGAGATGGGGGCCGC......................187.000.00-----5.00-1.00---------------------------------------------1.00------------------------------------------------------
...................ACCGAGTGGACATTTTGG.....................................................................................................................................................................................................................1814.004.00------------2.00--------1.00----------------------------------------------1.00---------------------------------------
.........................................................................................................TCTCGGGTCGGTCGGTC................................................................................................................................174.000.00------------------------1.00-------1.00---------------------------------------------------------------1.00---1.00-------
.......................................TTTGTCCGCGGGTCAGTA.................................................................................................................................................................................................1814.004.00------------2.00---------------------------1.00----------------1.00--------------------------------------------------
...........................................................................................................................................AGGATTCCTGATCTTTAGG............................................................................................1914.004.00----------4.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGGGGCGCGGCGCGAGGGCAGGGAGCGGG..................................................................294.000.003.001.00----------------------------------------------------------------------------------------------------------
.........................................TGTCCGCGGGTCAGTACGGC.............................................................................................................................................................................................2013.003.00-------------3.00----------------------------------------------------------------------------------------------
.................................................................................................................................................................................GAGTGGGTGTAAGAGCTTCTGGCCTA...............................................2613.003.00--3.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................GTGTAAGAGCTTCTGGCC.................................................1813.003.00---3.00--------------------------------------------------------------------------------------------------------
.................................................................................AAAGTAGGAGGTGGGATC.......................................................................................................................................................1813.003.00----1.00-------------------------------------------1.00-------------------------------------1.00---------------------
........................................................................................................................................................................................TGTAAGAGCTTCTGGCCTACGTGCGG........................................2613.003.00--------------------------2.00---1.00-----------------------------------------------------------------------------
..............................................................................................................................................................................AGGGAGTGGGTGTAAGAG..........................................................1813.003.00--------1.00-----1.00-----1.00---------------------------------------------------------------------------------------
..........................................................................TGGCGCGAAAGTAGGAGG..............................................................................................................................................................1813.003.00----1.00--1.00------------1.00---------------------------------------------------------------------------------------
............................................................CCCCTGGGTCCACGTGGCGCGAAAGTAGGAGGTGGGATCTGGGCGTCTCGGGTCGGTCGGACCG..............................................................................................................................6413.003.00-----------------3.00------------------------------------------------------------------------------------------
...........................................TCCGCGGGTCAGTACGGC.............................................................................................................................................................................................1813.003.00--------1.00-----1.001.00--------------------------------------------------------------------------------------------
.............................CATTTTGGTCTTTGTCCG...........................................................................................................................................................................................................1813.003.00------3.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGGGGCGCGGCGCGAGGGCAGGGAGTGGGCG................................................................3113.001.003.00-----------------------------------------------------------------------------------------------------------
............................................................................GCGCGAAAGTAGGAGGTG............................................................................................................................................................1813.003.00--------2.00----------------------------------------------------------------------------------1.00----------------
............................ACATTTTGGTCTTTGTCCG...........................................................................................................................................................................................................1913.003.00------2.00-----------------------------------------------------------------------------------1.00-----------------
..................................................................................................................................................CTGATCTTTAGGGGCGCGG.....................................................................................1912.002.00--2.00---------------------------------------------------------------------------------------------------------
...........................................................................................GTGGGATCTGGGCGTCTCGGGT.........................................................................................................................................2212.002.00--2.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................AGAGCTTCTGGCCTACGTGCGGGGCGGAG.................................2912.002.001.001.00----------------------------------------------------------------------------------------------------------
.........................................................................GTGGCGCGAAAGTAGGAG...............................................................................................................................................................1812.002.00------------------2.00-----------------------------------------------------------------------------------------
.........................................................CGGCCCCTGGGTCCACGTGGCGCGAAAGTAG..................................................................................................................................................................3112.002.00-----------1.00-----------------------------------------------------------------------------------1.00------------
......................................................................CACGTGGCGCGAAAGTAGGAGGTGGGAT........................................................................................................................................................2812.002.00------------------------1.00------------------------------------------------1.00----------------------------------
..........................................................................TGGCGCGAAAGTAGGAG...............................................................................................................................................................1712.002.00--------------------------------------------------------------------------1.00-------------1.00-------------------
..........................................................................................................CTCGGGTCGGTCGGACCGGGGAGGT.......................................................................................................................2512.002.00--------------1.00-----------------------------1.00---------------------------------------------------------------
.........................................................................................................................................................TTAGGGGCGCGGCGCGAGGGCAGGGAGTGGG..................................................................3112.002.00-2.00----------------------------------------------------------------------------------------------------------
.........................................................................GTGGCGCGAAAGTAGGAGG..............................................................................................................................................................1912.002.00--1.00----1.00----------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGGGGCGCGGCGCGAGGGCAGGGAGTGGGTG................................................................3112.002.001.001.00----------------------------------------------------------------------------------------------------------
.................................................................................AAAGTAGGAGGTGGGATCTGG....................................................................................................................................................2112.002.00--2.00---------------------------------------------------------------------------------------------------------
..................................................................................AAGTAGGAGGTGGGATCTG.....................................................................................................................................................1912.002.00----------------------------------2.00-------------------------------------------------------------------------
...................ACCGAGTGGACATTTTGGT....................................................................................................................................................................................................................1912.002.00--------1.00--------------1.00------------------------------------------------------------------------------------
..........................................................................TGGCGCGAAAGTAGGAGGTG............................................................................................................................................................2012.002.00----1.00----------1.00--------------------------------------------------------------------------------------------
................................................................................................................TCGGTCGGACCGGGGAG.........................................................................................................................1712.002.00---------2.00--------------------------------------------------------------------------------------------------
.............................................................................CGCGAAAGTAGGAGGTGG...........................................................................................................................................................1812.002.00----2.00-------------------------------------------------------------------------------------------------------
..............................ATTTTGGTCTTTGTCCGCGGG.......................................................................................................................................................................................................2112.002.00-------------------------------1.00---1.00------------------------------------------------------------------------
...................................................................................................TGGGCGTCTCGGGTCGGTCGGACCGGGGAGG........................................................................................................................3112.002.001.001.00----------------------------------------------------------------------------------------------------------
................................................................................GAAAGTAGGAGGTGGGAT........................................................................................................................................................1812.002.00----1.00------------------------1.00------------------------------------------------------------------------------
.............................................................................................................................................................................................................TGCGGGGCGGAGATGGGGGCCCC......................232.000.002.00-----------------------------------------------------------------------------------------------------------
........................................................................................GAGGTGGGATCTGGGCGT................................................................................................................................................1811.001.00-----------------------------------------------------------------------------1.00------------------------------
....................................................................................................................................AAAGGGGAGGATTCCTGATCTTT...............................................................................................2311.001.00-------------------------------------------1.00----------------------------------------------------------------
.............................................CGCGGGTCAGTACGGCCCCTGGGTCCACGTGGC............................................................................................................................................................................3311.001.00-------------------------------------------------------1.00----------------------------------------------------
...................................................................GTCCACGTGGCGCGAAAGTAGGA................................................................................................................................................................2311.001.00----------------------------------------------------------------------1.00-------------------------------------
.................................................GGTCAGTACGGCCCCTGGGT.....................................................................................................................................................................................2011.001.00------------------------------------------------------------1.00-----------------------------------------------
........................................................ACGGCCCCTGGGTCCACGTGGCGCGAAAGTAG..................................................................................................................................................................3211.001.00---------------------------------------------------------------------------------------1.00--------------------
..............................................................................GCGAAAGTAGGAGGTGGGAT........................................................................................................................................................2011.001.00-----------------------------------------------------------1.00------------------------------------------------
................................................................................................................TCGGTCGGACCGGGGAGGTTATT...................................................................................................................231.000.00---------------------------------------------------------------------------------1.00--------------------------
........AAGCGCAGCGCACCGAGTGGACA...........................................................................................................................................................................................................................2311.001.00----1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................CCTACGTGCGGGGCGGAGATG..............................2111.001.00---1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CGGAGATGGGGGCCTCTGAGG.................2111.001.00---1.00--------------------------------------------------------------------------------------------------------
........................................................................CGTGGCGCGAAAGTAGGA................................................................................................................................................................1811.001.00--------------------------------------------------1.00---------------------------------------------------------
...........................................................................................................................................................AGGGGCGCGGCGCGAGGGCAGGGAGTGGG..................................................................2911.001.00-1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................GGTCGGACCGGGGAGGT.......................................................................................................................1711.001.00-------------------------------------------------------------------------------1.00----------------------------
.....................CGAGTGGACATTTTGG.....................................................................................................................................................................................................................1631.001.00------------------------------------0.67--------------------------------------------------------------------0.33--
............................................................................GCGCGAAAGTAGGAGGTGGGAT........................................................................................................................................................2211.001.00---------------1.00--------------------------------------------------------------------------------------------
...............................................................................CGAAAGTAGGAGGTGGAAG........................................................................................................................................................191.000.00--------------------------------------------------------------------------------1.00---------------------------
.........................................................................................................TCTCGGGTCGGTCGGACCGGGGAGG........................................................................................................................2511.001.001.00-----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GTGCGGGGCGGAGATGGTTTT.........................211.000.00---1.00--------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CTGAGGCGGGTTTGAGCGAG...2011.001.00---1.00--------------------------------------------------------------------------------------------------------
..................................................................................AAGTAGGAGGTGGGATCTGG....................................................................................................................................................2011.001.00---1.00--------------------------------------------------------------------------------------------------------
.............................................CGCGGGTCAGTACGGC.............................................................................................................................................................................................1611.001.00---------------------------------------1.00--------------------------------------------------------------------
.................................................................................AAAGTAGGAGGTGGGATCTGGGCGTCT..............................................................................................................................................2711.001.00-------------------1.00----------------------------------------------------------------------------------------
.....................CGAGTGGACATTTTGGTCTTTGTC.............................................................................................................................................................................................................2411.001.00-------------------------------------1.00----------------------------------------------------------------------
........................................TTGTCCGCGGGTCAG...................................................................................................................................................................................................1511.001.00---------------------------------------------------1.00--------------------------------------------------------
...................................................................................................TGGGCGTCTCGGGTCGGTCGGA.................................................................................................................................2211.001.00------------------------------------------1.00-----------------------------------------------------------------
.....................................................................................TAGGAGGTGGGATCTGGGCGTCTCGG...........................................................................................................................................2611.001.00--1.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGGGGGCCTCTGAGGCGGGGC...........241.000.00-1.00----------------------------------------------------------------------------------------------------------
...........CGCAGCGCACCGAGTGGACATCTTG......................................................................................................................................................................................................................251.000.00-----------------------------------------------------------------------------------------------------1.00------
..........................................................................................................................................................................................................ACGTGCGGGGCGGAGATG..............................1811.001.00------------------------------------------------------------------1.00-----------------------------------------
.............................................................................CGCGAAAGTAGGAGGTGGGA.........................................................................................................................................................2011.001.00---1.00--------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGGGGGCCTCTGAGGCGGGCTTG.........261.000.00-1.00----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................GGTGTAAGAGCTTCTGGCCT................................................2011.001.00--1.00---------------------------------------------------------------------------------------------------------
.....................................................................CCACGTGGCGCGAAAGTAGG.................................................................................................................................................................2011.001.00---1.00--------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................AGGCGGGTTTGAGCGACCG.191.000.001.00-----------------------------------------------------------------------------------------------------------
.....................................................................CCACGTGGCGCGAAAGTA...................................................................................................................................................................1811.001.00----------------------1.00-------------------------------------------------------------------------------------
..................................TGGTCTTTGTCCGCGGGTCAGTACGGCCCCTGG.......................................................................................................................................................................................3311.001.00-----------------------------------------------1.00------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGGGGGCCTCTGAGGCGGGGGTG.........261.000.00-1.00----------------------------------------------------------------------------------------------------------
.................................TTGGTCTTTGTCCGCGGGTCAGTAC................................................................................................................................................................................................2511.001.00-------------------------------------------------------------------------------------------------1.00----------
........................................................................................................................................................................................TGTAAGAGCTTCTGGCCTACGTGCGGGGCGG...................................3111.001.001.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................ATGGGGGCCTCTGAGGCGGGTTTGAGCG.....2811.001.001.00-----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GCGCGAGGGCAGGGAGGTGG..................................................................201.000.00----------------------------------------------------1.00-------------------------------------------------------
...................................GGTCTTTGTCCGCGGGTCAGTACGGC.............................................................................................................................................................................................2611.001.00------1.00-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................TAGGGGCGCGGCGCGAGGGCAGGGTG......................................................................261.000.00-1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................GGCGTCTCGGGTCGGTCGGACCGGGGAGGTC......................................................................................................................311.000.00-1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GGCGGAGATGGGGGCAGC......................181.000.00-----------------------------------------------------------------------------------------1.00------------------
...........................................................................GGCGCGAAAGTAGGAGGTGGGATCTG.....................................................................................................................................................2611.001.00---1.00--------------------------------------------------------------------------------------------------------
..............................ATTTTGGTCTTTGTCCAGTG........................................................................................................................................................................................................201.000.00----1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGGGGGCCTCTGAGGCGGGG............231.000.00-1.00----------------------------------------------------------------------------------------------------------
....................................................CAGTACGGCCCCTGGGTG....................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------------------1.00-------------
................................................................................GAAAGTAGGAGGTGGGATC.......................................................................................................................................................1911.001.00----------------------1.00-------------------------------------------------------------------------------------
..........................................................................................................................................................................................................ACGTGCGGGGCGGAGATGGGGGCCC.......................251.000.001.00-----------------------------------------------------------------------------------------------------------
...........................................TCCGCGGGTCAGTACGG..............................................................................................................................................................................................1711.001.00-------------------------------------------------------------------------------------1.00----------------------
.............................................CGCGGGTCAGTACGGCCCCTGGGTC....................................................................................................................................................................................2511.001.00-----------1.00------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................ATGGGGGCCTCTGAGGCGGGCC...........221.000.001.00-----------------------------------------------------------------------------------------------------------
......................................................................CACGTGGCGCGAAAGTAGGAGGTG............................................................................................................................................................2411.001.00-----------------------------1.00------------------------------------------------------------------------------
...........................................................................................GTGGGATCTGGGCGTCTCGGGTCGGTC....................................................................................................................................2711.001.00----------------------------------------------------------1.00-------------------------------------------------
..........................................................................TGGCGCGAAAGTAGG.................................................................................................................................................................1511.001.00---------1.00--------------------------------------------------------------------------------------------------
....................................................CAGTACGGCCCCTGGGTC....................................................................................................................................................................................1811.001.00---------------------------------------------------------------------1.00--------------------------------------
.........................................................................................................TCTCGGGTCGGTCGGACCGGGGAGGTTAA....................................................................................................................2911.001.00---------------------------------------------------------------1.00--------------------------------------------
...............................TTTTGGTCTTTGTCC............................................................................................................................................................................................................1501.001.00-----------1.00------------------------------------------------------------------------------------------------
.................................................................................AAAGTAGGAGGTGGGATCTG.....................................................................................................................................................2011.001.00--------------------------------------------------------------1.00---------------------------------------------
.........................................................................GTGGCGCGAAAGTAGGAGGTG............................................................................................................................................................2111.001.00-----------------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGGGGGCCTCTGAGGCGGGTCTG.........261.000.001.00-----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CGGAGATGGGGGCCTCTGA...................1911.001.00---1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................CGGGGCGGAGATGGGGGCCTCTGAGGCGGG.............3011.001.001.00-----------------------------------------------------------------------------------------------------------
.......................................................................ACGTGGCGCGAAAGTAGGAGG..............................................................................................................................................................2111.001.00----1.00-------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GGCGGAGATGGGGGCCGCA.....................191.000.00----------------------------------------------------------------------------1.00-------------------------------
..................................................................................AAGTAGGAGGTGGGATCTGGGCGTCTCGGG..........................................................................................................................................3011.001.001.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TTAGGGGCGCGGCGCGAGGGCAGGGAGCGGG..................................................................311.000.00-1.00----------------------------------------------------------------------------------------------------------
......................................................................CACGTGGCGCGAAAGTAG..................................................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------1.00---------------
......................................................................................................................................................................................................................................AGGCGGGTTTGAGCGAGTG.1911.001.00-------------------------------------------------------------------1.00----------------------------------------
.............CAGCGCACCGAGTGGACATTTTG......................................................................................................................................................................................................................2311.001.00-1.00----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................TAGGGGCGCGGCGCGAGGGCAGGGAG......................................................................2611.001.001.00-----------------------------------------------------------------------------------------------------------
............................ACATTTTGGTCTTTGTCCGCGGGT......................................................................................................................................................................................................2411.001.00------------------------------------------------------------------------------------------------------1.00-----
.....................................................................................TAGGAGGTGGGATCTGGGC..................................................................................................................................................1911.001.00-------------------------------1.00----------------------------------------------------------------------------
......................................................................................AGGAGGTGGGATCTGGCGC.................................................................................................................................................191.000.00-1.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................TCTGAGGCGGGTTTGTG.......171.000.00----------------1.00-------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GGCGGAGATGGGGGCCGA......................181.000.00-----1.00------------------------------------------------------------------------------------------------------
...............................................................................CGAAAGTAGGAGGTGGGATCTGGGCG.................................................................................................................................................2611.001.00---------------------------------------------------------------------------------------------------1.00--------
..............................................GCGGGTCAGTACGGCCC...........................................................................................................................................................................................1711.001.00----------------1.00-------------------------------------------------------------------------------------------
................................................................................................................TCGGTCGGACCGGGGAGGTCTG....................................................................................................................221.000.00------------------------------------1.00-----------------------------------------------------------------------
...............................................CGGGTCAGTACGGCCCCTGGGTCCACGTGGC............................................................................................................................................................................3111.001.00-----------1.00------------------------------------------------------------------------------------------------
............................................................CCCCTGGGTCCACGTGG.............................................................................................................................................................................1711.001.00-----------------------------------------1.00------------------------------------------------------------------
...................................GGTCTTTGTCCGCGGGTCAGTA.................................................................................................................................................................................................2211.001.00-------------------------------------------------1.00----------------------------------------------------------
..................................................................................AAGTAGGAGGTGGGATCTGA....................................................................................................................................................2011.002.00-------1.00----------------------------------------------------------------------------------------------------
.............................................CGCGGGTCAGTACGGCCCCTGGGTCCACGT...............................................................................................................................................................................3011.001.00----------------------------------------------1.00-------------------------------------------------------------
.......................................................................................................................................................CTTTAGGGGCGCGGCGGTAG...............................................................................201.000.00-----------------------------------------------------------------------1.00------------------------------------
..................................................................................................................................................................................AGTGGGTGTAAGAGCTTCTGGCCT................................................2411.001.001.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................GTAAGAGCTTCTGGCCTACGTGCGGGGCG....................................2911.001.00------------------------------------------------------------------------------1.00-----------------------------
...................................GGTCTTTGTCCGCGGGTCAG...................................................................................................................................................................................................2011.001.00--------------------------------1.00---------------------------------------------------------------------------
........................GTGGACATTTTGGTCTTTGTC.............................................................................................................................................................................................................2111.001.00---------------------------------1.00--------------------------------------------------------------------------
......................................................................................................................................................................................................................................AGGCGGGTTTGAGCGAGT..1811.001.00----------------------------------------------------------------------------------1.00-------------------------
.........................................................................................................................................................................................GTAAGAGCTTCTGGCCTAC..............................................1911.001.00---------------------------------1.00--------------------------------------------------------------------------
...........................................TCCGCGGGTCAGTACGGCCCCTGGGT.....................................................................................................................................................................................2611.001.00--------------------------------------------------------1.00---------------------------------------------------
................................................................................................................................................................................................................GGGGCGGAGATGGGGGCCGCG.....................211.000.00----------------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................CGCGGCGCGAGGGCAGGGAGTGGGGGC...............................................................271.000.001.00-----------------------------------------------------------------------------------------------------------
..............................................................................GCGAAAGTAGGAGGTGGGATC.......................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------------1.00---------
.............................................................................CGCGAAAGTAGGAGGTGGGATCTGGG...................................................................................................................................................2611.001.00-----------------------------------1.00------------------------------------------------------------------------
...............................................CGGGTCAGTACGGCCCCTGGGTCCA..................................................................................................................................................................................2511.001.00---------------------------------------------------------------------------1.00--------------------------------
..................................TGGTCTTTGTCCGCGG........................................................................................................................................................................................................1611.001.00-----------------------------------------------------------------------------------1.00------------------------
...........................................................................GGCGCGAAAGTAGGAGTTT............................................................................................................................................................191.000.00---------------------------1.00--------------------------------------------------------------------------------
..........................................................................................................CTCGGGTCGGTCGGACCGGGG...........................................................................................................................2111.001.00----------------------------1.00-------------------------------------------------------------------------------
..................................................................................................................................................................................................................GGCGGAGATGGGGGCCGG......................181.000.00-----1.00------------------------------------------------------------------------------------------------------
..........................................................................TGGCGCGAAAGTAGGAGGT.............................................................................................................................................................1911.001.00-------1.00----------------------------------------------------------------------------------------------------
....................................................................................................GGGCGTCTCGGGTCGGTCGGACCGGGGA..........................................................................................................................2811.001.00---------1.00--------------------------------------------------------------------------------------------------
.................................................................................AAAGTAGGAGGTGGGATCCGG....................................................................................................................................................2111.003.00--1.00---------------------------------------------------------------------------------------------------------
.................................TTGGTCTTTGTCCGCGG........................................................................................................................................................................................................1711.001.00-------------------------1.00----------------------------------------------------------------------------------
...........................................................................................................TCGGGTCGGTCGGACCGGGGAGGCT......................................................................................................................251.000.00-1.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................AGGGCAGGGAGTGGGTGTAAGAGCTTCTGGCC.................................................3211.001.00-1.00----------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................AGAGCTTCTGGCCTACGTGCGGGGCGG...................................2711.001.001.00-----------------------------------------------------------------------------------------------------------
.....................................................................................TAGGAGGTGGGATCTGGC...................................................................................................................................................181.000.00-------------------------------------------------------------1.00----------------------------------------------
.....................................................................CCACGTGGCGCGAAAGTAG..................................................................................................................................................................1911.001.00---------------------1.00--------------------------------------------------------------------------------------
.........................................................................................................................................................TTAGGGGCGCGGCGCGAGGGCAGGGAGTGGGC.................................................................3211.002.00-1.00----------------------------------------------------------------------------------------------------------
...........................................................................GGCGCGAAAGTAGGAGGAAGA..........................................................................................................................................................211.000.00-------------------1.00----------------------------------------------------------------------------------------
............................................................................GCGCGAAAGTAGGAGGTGGGATCT......................................................................................................................................................2411.001.00---------------------------1.00--------------------------------------------------------------------------------
..................................................................................................................................................CTGATCTTTAGGGGCGCGGCGCGAG...............................................................................2511.001.00------------------------------1.00-----------------------------------------------------------------------------
........................................................................................................................................GGGAGGATTCCTGATCTTTAGGGGCGC.......................................................................................2711.001.00--------------------------------------1.00---------------------------------------------------------------------
.........AGCGCAGCGCACCGAGTGGACATTTT.......................................................................................................................................................................................................................2611.001.00------------------------------------------------------------------------------------1.00-----------------------
.............................................CGCGGGTCAGTACGGCCCCTGGGTCCACGTGG.............................................................................................................................................................................3211.001.00-----------------------------------------------------------------1.00------------------------------------------
.......................................................................................................................................................................................................................AGATGGGGGCCTCTGAGGCGGGC............231.000.00-1.00----------------------------------------------------------------------------------------------------------
...................................................................................AGTAGGAGGTGGGATCTGG....................................................................................................................................................1921.001.00------------------0.50------------------------------------------------------------------------------------0.50----
....................................................................................GTAGGAGGTGGGATCTGGG...................................................................................................................................................1930.670.67--0.67---------------------------------------------------------------------------------------------------------
..................................................GTCAGTACGGCCCCTG........................................................................................................................................................................................1620.500.50-------------------------------------0.50----------------------------------------------------------------------
.......................................................................................................................GACCGGGGAGGTTAAAGG.................................................................................................................1820.500.50--------------------------------------------------------------------------------------------------------0.50---
.........................................................................................................................................................................................GTAAGAGCTTCTGGCCT................................................1720.500.50-------------0.50----------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................GCGGAGATGGGGGCC........................1530.330.33---------0.33--------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AGATGGGGGCCTCTGAGG.................1830.330.33----------------------------------------------------------------------------------------------------------0.33-
.........................................................................................................................................................................................GTAAGAGCTTCTGGC..................................................1540.250.25--------------------------------------0.25---------------------------------------------------------------------
..................................................................................................................................................................CGGCGCGAGGGCAGG.........................................................................1540.250.25---------------------------------------0.25--------------------------------------------------------------------

Antisense strand
GAGTGCGCAAGCGCAGCGCACCGAGTGGACATTTTGGTCTTTGTCCGCGGGTCAGTACGGCCCCTGGGTCCACGTGGCGCGAAAGTAGGAGGTGGGATCTGGGCGTCTCGGGTCGGTCGGACCGGGGAGGTTAAAGGGGAGGATTCCTGATCTTTAGGGGCGCGGCGCGAGGGCAGGGAGTGGGTGTAAGAGCTTCTGGCCTACGTGCGGGGCGGAGATGGGGGCCTCTGAGGCGGGTTTGAGCGAGTGT
......................................................................................................((.((((.((((.....)))).)))).))((((((..(((...)))..))))))..............................................................................................
....................................................................................................101..........................................................162......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577579(Rovira)
total RNA. (breast)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040016(GSM532901)
G645N. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037936(GSM510474)
293cand1. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR040037(GSM532922)
G243T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR029129(GSM416758)
SW480. (cell line)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029127(GSM416756)
A549. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR029126(GSM416755)
143B. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040012(GSM532897)
G648N. (cervix)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		GSM532886(GSM532886)
G850T. (cervix)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
...........................................................CACGTGGACCCAGGGGC.............................................................................................................................................................................. 1711.001.00-------------------------1.00----------------------------------------------------------------------------------
...............................................................................................................................................................................................................CGGGGCGGAGATGGGGCC......................... 181.000.00------------------------------------------------------1.00-----------------------------------------------------
.............................................................................................................................................................................GCTCTTACACCCACTCCCTG......................................................... 2011.001.00---------------------------------------------1.00--------------------------------------------------------------
.............................................................................................................................................................................CCAGAAGCTCTTACACCCACTCCCTG................................................... 2611.001.00------------------------------------------------------------------------1.00-----------------------------------
..................................................................................................................GGTCGGACCGGGGAGGCGC..................................................................................................................... 191.000.00----------------------------------------------------------------1.00-------------------------------------------
...................................................................................................................................................................................................................GCGGAGATGGGGGCCGGG..................... 1831.000.00----------------------------1.00-------------------------------------------------------------------------------
................................................................................................................................................................................................................CCCCCATCTCCGCCCC.......................... 1670.140.14-----------------------------------------------------------------------------------------------------------0.14