uc010cku.1_intron_2_0_chr17_4872633

AGCCCTAACTCCCCTTCTCTCTCCACAAGCTGACCTGGATTGCACTTAAGGTATTAGGCATGAGCTCTGAGTGTGAGGTCTGTGATGATTCAGTCTTTCCTTGAGTGTGTGGGTTACAGAGAGTCTTGCATCAGCCTAACTTGGGTGAGCCTCAGGGCTTTGGGTCTCCGTCCCTCTATTTCAGCCCCTGTCCCTCCTCCCCACCCCTGCAGTTTGCACTCTATAAGAAGATGACCCAGGCGGCCATCCTGATCCAGAGCAA
...............................................................................................................................................((.(((...(((((((..(((.......)))........))))).))...)))..))..............................................................
...............................................................................................................................................144............................................................207.....................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR207116(GSM721078)
Nuclear RNA. (cell line)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR189784

SRR207110(GSM721072)
Nuclear RNA. (cell line)

SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)

SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)

GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)

SRR037935(GSM510473)
293cand3. (cell line)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)

SRR037943(GSM510481)
293DcrTN. (cell line)

SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)

SRR015447(SRR015447)
nuclear small RNAs. (breast)

SRR038862(GSM458545)
MM472. (cell line)

SRR343334

SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR037936(GSM510474)
293cand1. (cell line)

SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)

DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)

SRR040037(GSM532922)
G243T. (cervix)

SRR189787

SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)

SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)

SRR029129(GSM416758)
SW480. (cell line)

DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)

SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)

SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR037937(GSM510475)
293cand2. (cell line)

SRR189785

SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)

SRR038858(GSM458541)
MEL202. (cell line)

SRR040007(GSM532892)
G601T. (cervix)

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

TAX577742(Rovira)
total RNA. (breast)

SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)

SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)

SRR189786

SRR029132(GSM416761)
MB-MDA231. (cell line)

SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)

GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)

GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)

SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)

SRR040035(GSM532920)
G001T. (cervix)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR033731(GSM497076)
h929 Cell line (h929). (B cell)

SRR037933(GSM510471)
293cand4_rep2. (cell line)

SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)

SRR553575(SRX182781)
source: Kidney. (Kidney)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR343335

...............................................................GCTCTGAGTGTGAGGTCTGTGATGATT............................................................................................................................................................................

20.00

12.00

4.00

2.00

..............................................................AGCTCTGAGTGTGAGGTCTGTGATGAT.............................................................................................................................................................................

9.00

2.00

1.00

2.00

1.00

..............................................................AGCTCTGAGTGTGAGGTCTGTGATGATT............................................................................................................................................................................

2.00

1.00

...........................................................................................................................................................................................................................TCTATAAGAAGATGACC..........................

2.00

....................................................................................................................................................GCCTCAGGGCTTTGGGTCTC..............................................................................................

2.00

..................................................................................................................................................................................................................AGTTTGCACTCTATAAGAAGATGAC...........................

2.00

..............................................................AGCTCTGAGTGTGAGGTCTGTGATGATTC...........................................................................................................................................................................

2.00

..............................................................AGCTCTGAGTGTGAGGTCTGTGATGA..............................................................................................................................................................................

2.00

1.00

...............................................................GCTCTGAGTGTGAGGTCTGTGATGAT.............................................................................................................................................................................

2.00

1.00

..............................................................................................................................................................................................................CTGCAGTTTGCACTCTAATTG...................................

1.00

0.00

1.00

.......................................................................................................................................................................................GCCCCTGTCCCTCCTCCACC...........................................................

1.00

0.00

1.00

..............................................TAAGGTATTAGGCATAGTT.....................................................................................................................................................................................................

1.00

0.00

1.00

...........................................................................................................TGTGGGTTACAGAGAGTCTTGCATCAGC...............................................................................................................................

1.00

..............................................................AGCTCTGAGTGTGAGGTCTGTGA.................................................................................................................................................................................

1.00

.......ACTCCCCTTCTCTCTCCTTC...........................................................................................................................................................................................................................................

1.00

0.00

1.00

...............................................................GCTCTGAGTGTGAGGTCTGTGATGATTCAGTA.......................................................................................................................................................................

1.00

0.00

1.00

............................................................................................................................................TTGGGTGAGCCTCAGGGCTTTGG...................................................................................................

1.00

..............................................TAAGGTATTAGGCATAAT......................................................................................................................................................................................................

1.00

0.00

1.00

.............................................................GAGCTCTGAGTGTGAGGTCTGTGATGATT............................................................................................................................................................................

1.00

............................................................................................................GTGGGTTACAGAGAGTC.........................................................................................................................................

1.00

............................................................................................................................................................................................................CCCTGCAGTTTGCACTTC........................................

1.00

0.00

1.00

........................................................................GTGAGGTCTGTGATGCC.............................................................................................................................................................................

1.00

0.00

1.00

.......................................................................TGTGAGGTCTGTGATGATT............................................................................................................................................................................

1.00

.............................................................GAGCTCTGAGTGTGAAGC.......................................................................................................................................................................................

1.00

0.00

1.00

.................................................................................................................TTACAGAGAGTCTTGCATCAGCCT.............................................................................................................................

1.00

0.00

1.00

.................................................................................................................................................................................................................CAGTTTGCACTCTATAAGAAGATGACCCAGGC.....................

1.00

..........................................CACTTAAGGTATTAGGCATGAGCTCTGAGTG.............................................................................................................................................................................................

1.00

...............................................................GCTCTGAGTGTGAGGTCTGTGATGA..............................................................................................................................................................................

1.00

..........CCCCTTCTCTCTCCACGTTG........................................................................................................................................................................................................................................

1.00

0.00

1.00

..............................................................AGCTCTGAGTGTGAGGTCTGTGATGATTCA..........................................................................................................................................................................

1.00

.............CTTCTCTCTCCACAAG.........................................................................................................................................................................................................................................

0.12

AGCCCTAACTCCCCTTCTCTCTCCACAAGCTGACCTGGATTGCACTTAAGGTATTAGGCATGAGCTCTGAGTGTGAGGTCTGTGATGATTCAGTCTTTCCTTGAGTGTGTGGGTTACAGAGAGTCTTGCATCAGCCTAACTTGGGTGAGCCTCAGGGCTTTGGGTCTCCGTCCCTCTATTTCAGCCCCTGTCCCTCCTCCCCACCCCTGCAGTTTGCACTCTATAAGAAGATGACCCAGGCGGCCATCCTGATCCAGAGCAA ...............................................................................................................................................((.(((...(((((((..(((.......)))........))))).))...)))..)).............................................................. ...............................................................................................................................................144............................................................207.....................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR037942(GSM510480) 293DroshaTN_cand5. (cell line)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR207116(GSM721078) Nuclear RNA. (cell line)	DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela)	SRR189784	SRR207110(GSM721072) Nuclear RNA. (cell line)	SRR314796(SRX084354) "Total RNA, fractionated (15-30nt)". (cell line)	SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line)	GSM359208(GSM359208) hepg2_bindASP_hl_2. (cell line)	SRR037935(GSM510473) 293cand3. (cell line)	SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex)	SRR330863(SRX091701) tissue: skin psoriatic involveddisease state:. (skin)	SRR037943(GSM510481) 293DcrTN. (cell line)	SRR207118(GSM721080) RRP40 knockdown. (RRP40 cell line)	SRR015447(SRR015447) nuclear small RNAs. (breast)	SRR038862(GSM458545) MM472. (cell line)	SRR343334	SRR330889(SRX091727) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR037936(GSM510474) 293cand1. (cell line)	SRR107297(GSM677704) 18-30nt fraction of small RNA. (cell line)	DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line)	SRR040037(GSM532922) G243T. (cervix)	SRR189787	SRR444058(SRX128906) Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)	SRR207112(GSM721074) RRP40 knockdown. (RRP40 cell line)	SRR029129(GSM416758) SW480. (cell line)	DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line)	SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin)	SRR191588(GSM715698) 52genomic small RNA (size selected RNA from t. (breast)	SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR037937(GSM510475) 293cand2. (cell line)	SRR189785	SRR039192(GSM494811) K562 cell line is derived from a CML patient . (cell line)	SRR038858(GSM458541) MEL202. (cell line)	SRR040007(GSM532892) G601T. (cervix)	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	TAX577742(Rovira) total RNA. (breast)	SRR033713(GSM497058) Burkitt Lymphoma (BL115). (B cell)	SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin)	SRR189786	SRR029132(GSM416761) MB-MDA231. (cell line)	SRR039613(GSM531976) Human Normal Liver Tissue Sample 3. (liver)	SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver)	SRR330915(SRX091753) tissue: normal skindisease state: normal. (skin)	GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain)	GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain)	SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line)	DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela)	SRR330878(SRX091716) tissue: skin psoriatic involveddisease state:. (skin)	SRR040035(GSM532920) G001T. (cervix)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR033731(GSM497076) h929 Cell line (h929). (B cell)	SRR037933(GSM510471) 293cand4_rep2. (cell line)	SRR342900(SRX096796) small RNA seq of Right atrial tissue. (heart)	SRR553575(SRX182781) source: Kidney. (Kidney)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR343335
.......................................................................................................................................................................GCTGAAATAGAGGGACGG.............................................................................	18	1	3.00	3.00	-	3.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................GAGTCTTGCATCAGCCTATC..........................................................................................................................	20		3.00	0.00	-	-	-	-	-	-	3.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....GCTTGTGGAGAGAGAAGGGGAGTTAG........................................................................................................................................................................................................................................	26	1	2.00	2.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................ATCATCACAGACCTCAC.............................................................................................................................................................................	17	2	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................................AACTGCAGGGGTGGGGAGGAGGGACAGGGGC................................................	31	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................CCTTGAGTGTGTGGGTTTTTC...............................................................................................................................................	21		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................AAATAGAGGGACGGAGAC.................................................................................	18	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................TTCAGCCCCTGTCCCTGG.................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................AAGTGCAATCCAGGTCAGCTTG.......................................................................................................................................................................................................................	22	1	1.00	1.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................GCCTCAGGGCTTTGGGTCTA..............................................................................................	20		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................AAAGACTGAATCATCACAGACCT....................................................................................................................................................................	23	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................GCTGATGCAAGACTCTCTG...............................................................................................................................	19	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.....................................................................................................................................................................................................................................................TTGCTCTGGATCAGGAT	17	1	1.00	1.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................GGTCTCCGTCCCTCTATAAA................................................................................	20		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..........................................................................................................................................................................GACAGGGGCTGAAATAGAGGGA......................................................................	22	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................CACTCAGAGCTCATGCCTAATACCTTAAGT.............................................................................................................................................................................................	30	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................AAAGACTGAATCATCAC....................................................................................................................................................................	17	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................ACAGGGGCTGAAATAGAGGG.......................................................................	20	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................................................................................AGCCCCTGTCCCTCCTATT.............................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................................................................AAGAAGATGACCCAGTGCA...................	19		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................TTTGGGTCTCCGTCCCAG......................................................................................	18		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-
....................................................................................................................TGATGCAAGACTCTCTG.................................................................................................................................	17	2	0.50	0.50	-	-	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................TGAATCATCACAGACC..........................................................................................................................................................................	16	2	0.50	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.50	-	-	-
...........................................................................................................................................................................................................GTGCAAACTGCAGGGG...........................................	16	5	0.20	0.20	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.20	-	-
......................................................................................................................................................................................AGGAGGGACAGGGGCT................................................................	16	7	0.14	0.14	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	0.14	-