ID: uc010bvn.2_intron_2_0_chr16_16127028_f.5p
GENE: (3)
chr16:16126978-16127227+


(1)
AGO2.ip
(3)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
HEART
(3)
HELA
(1)
OTHER
(7)
SKIN

Sense strand
GAGTCCAGCGCTTCCTTCCTGTCGAGGATCACCTTCTGGTGGATCACAGGGTAAGGCCAGGCCCCCCAGACCTCAGGGAGGTGGTGGGGAGTGAATGAATGAATGAATGAACGAATGAACATGCTCAGCTCCCCCTCCCCAACTTCTCCCTCCTTTGCTCTTCTGCAGAGTTGTCTTGAATCTGCCTGTGCTGGCCATGTGGTCTCAGAGACACCAACTCTGTCCGGCAGTTCCGTGAACTTGAATGTGA
.....................................................................(((((...)))))........................................................................................................................................................................
...................................................................68....................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577746(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................ATGAATGAATGAACGAGATT....................................................................................................................................2037.000.0036.00---1.00-----------------------
.................................TTCTGGTGGATCACAGG........................................................................................................................................................................................................1722.502.50--1.50-----1.00-------------------
................................CTTCTGGTGGATCACAGG........................................................................................................................................................................................................1812.002.00--1.00--------1.00----------------
........................................................................TCAGGGAGGTGGTGGGGTTGG.............................................................................................................................................................212.000.00---1.00-1.00----------------------
......AGCGCTTCCTTCCTGTCGAGGAT.............................................................................................................................................................................................................................2311.001.00-1.00--------------------------
...............................CCTTCTGGTGGATCACAGG........................................................................................................................................................................................................1911.001.00------1.00---------------------
.............................CACCTTCTGGTGGATCACAGG........................................................................................................................................................................................................2111.001.00----------------------1.00-----
..................................................................................................ATGAATGAATGAACGAAATTC...................................................................................................................................211.000.00-----------------------1.00----
..............................................................................................................................AGCTCCCCCTCCCCAACTTCT.......................................................................................................2111.001.00-------1.00--------------------
.....................................................................................................AATGAATGAACGAATGAACTCTG..............................................................................................................................231.000.00-1.00--------------------------
..............................................................................................ATGAATGAATGAATGAACGAATGAACGT................................................................................................................................281.000.00--------------------1.00-------
..................................................................................................ATGAATGAATGAACGAATGAACTCTG..............................................................................................................................261.000.00----1.00-----------------------
........................................................................TCAGGGAGGTGGTGGTCTT...............................................................................................................................................................191.000.00---1.00------------------------
.................................................................................................AATGAATGAATGAACGAATGAACTCTG..............................................................................................................................271.000.00-1.00--------------------------
................................................................................................................................................................................................................................CGGCAGTTCCGTGAACTTG.......1911.001.00-------------1.00--------------
...................TGTCGAGGATCACCTTCTGGTTTT...............................................................................................................................................................................................................241.000.00-------------------------1.00--
.........GCTTCCTTCCTGTCGAGGAT.............................................................................................................................................................................................................................2011.001.00--------------1.00-------------
........................................................................TCAGGGAGGTGGTGGGGTGGT.............................................................................................................................................................211.000.00-----1.00----------------------
.......................................................................................................................CATGCTCAGCTCCCCCTCCCCAACTTCT.......................................................................................................2811.001.00------------1.00---------------
...................TGTCGAGGATCACCTTCTG....................................................................................................................................................................................................................1911.001.00----------------1.00-----------
..................................................................................................ATGAATGAATGAACGAAATG....................................................................................................................................201.000.00---------------1.00------------
.......................................................................................................TGAATGAACGAATGAACTCTG..............................................................................................................................211.000.00------1.00---------------------
..................................TCTGGTGGATCACAGG........................................................................................................................................................................................................1620.500.50--------------------------0.50-
..................................................................................................................................CCCCCTCCCCAACTTCT.......................................................................................................1730.330.33---------------------------0.33

Antisense strand
GAGTCCAGCGCTTCCTTCCTGTCGAGGATCACCTTCTGGTGGATCACAGGGTAAGGCCAGGCCCCCCAGACCTCAGGGAGGTGGTGGGGAGTGAATGAATGAATGAATGAACGAATGAACATGCTCAGCTCCCCCTCCCCAACTTCTCCCTCCTTTGCTCTTCTGCAGAGTTGTCTTGAATCTGCCTGTGCTGGCCATGTGGTCTCAGAGACACCAACTCTGTCCGGCAGTTCCGTGAACTTGAATGTGA
.....................................................................(((((...)))))........................................................................................................................................................................
...................................................................68....................................................122..............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577746(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................CCCCAGACCTCAGGGTGTA........................................................................................................................................................................ 191.000.00---------1.00------------------
...................................................................................................TGAATGAATGAACGAATCTA................................................................................................................................... 201.000.00------------------1.00---------
.......................................................................................................................................TCCCCAACTTCTCCCTCATA............................................................................................... 201.000.00----------1.00-----------------
.........................................................................................AGTGAATGAATGAATGAATGAAGTAG....................................................................................................................................... 261.000.00-------------------1.00--------
...................................................................................GTGGGGAGTGAATGAAA...................................................................................................................................................... 171.000.00------------------------1.00---
.........................................................................................................................................CCCAACTTCTCCCTCCACCG............................................................................................. 201.000.00-----------------1.00----------
.....CAGCGCTTCCTTCCTGC.................................................................................................................................................................................................................................... 171.000.00---------------------1.00------