ID: uc010bqr.2_intron_0_0_chr16_284857_f.5p
GENE: ITFG3(1)
chr16:284807-285056+


(1)
AGO1.ip 		(4)
AGO2.ip 		(19)
B-CELL 		(3)
BRAIN 		(19)
BREAST 		(40)
CELL-LINE 		(7)
CERVIX 		(3)
HEART 		(4)
HELA 		(1)
KIDNEY 		(9)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
GCCAGGGGGCGGGGCCAGCGGCGCGGTCGGGTGAGAGGCCGCGGCGGCAGGTGAGTGAGCGCGGCCTCGTACTCGCGCGTGCACGCCGCAGGGGCGCCGCAGGCCGCCCCTTCGCTCTGGGACCCCGGCCCCCAGGTTCCCCAGTCCCTCGGCCCCTGGAGGACCCCGCCGTGCTGCCCCCTAGCTCCTCCGCCTTCCCGAGTCGGGTGCGGGCCGGGAGGCTGCGGCGGGGCCCCAAGTCCCTCAGCGG
........................................................(((((((((...((((......))))..))))).((((((((...))).)))))...)))).(((........)))......................................................................................................................
........................................................57..........................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR038859(GSM458542)
MM386. (cell line)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189783SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR038855(GSM458538)
D10. (cell line)
.............................................................CGGCCTCGTACTCGCGCGTGCT.......................................................................................................................................................................22117.0017.003.002.00---1.00--1.00--1.00-----------1.00-1.00----1.00-----2.00-----------1.00-------------1.00-----------------------------------------------------1.00-------1.00------------
.............................................................CGGCCTCGTACTCGCGCGTGC........................................................................................................................................................................21117.0017.007.00-1.00--------1.001.00-----3.00----1.00----1.00----------------------------------------------1.00-------------------------------------------------1.00-----------
.............................................................CGGCCTCGTACTCGCGCGTGCA.......................................................................................................................................................................22115.0015.00-1.00--1.00------1.001.00-1.00-------1.00---------------1.00-----2.002.00---------------------------1.00-------------1.00-------------------1.001.00----------------------------
.............................................................CGGCCTCGTACTCGCGCGTGCAT......................................................................................................................................................................23111.0015.00-1.00--------2.00-----------1.00----------------1.00--------------------------1.00--------------------------------1.00--1.00--1.00-----1.00-----------1.00-------------
...........................................GCGGCAGGTGAGTGAGCG.............................................................................................................................................................................................18111.0011.00-1.00------------1.003.00---2.00---1.00-------------------1.00------------------------------------------------------------1.00-------------1.00------------------
.............................................................CGGCCTCGTACTCGCGCGTGCAC......................................................................................................................................................................2319.009.00--1.00----1.00---1.00--------1.00---------1.00--1.00--------1.00---------------1.00-----------------------------------------1.00------------------------------------
.................................................GGTGAGTGAGCGCGGCCTCGT....................................................................................................................................................................................2117.007.00----------------1.00--------------------1.00--1.00-----------------------1.00------------1.00-----------------1.00-------1.00---------------------------------
.............................................................CGGCCTCGTACTCGCGCGTG.........................................................................................................................................................................2016.006.00--2.00-----2.00--------------------------2.00-----------------------------------------------------------------------------------------------------
..........................................................GCGCGGCCTCGTACTCGCGCGTGC........................................................................................................................................................................2415.005.00------5.00----------------------------------------------------------------------------------------------------------------------------------
................................................................CCTCGTACTCGCGCGTGCACGC....................................................................................................................................................................2215.005.004.00-------1.00--------------------------------------------------------------------------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGCGTGCAA......................................................................................................................................................................2315.0015.00----------1.00---1.00-------1.00--1.00--------------------------------------------------------------------------------1.00------------------------------
................................................AGGTGAGTGAGCGCGGCCTCGTA...................................................................................................................................................................................2314.004.00---------4.00-------------------------------------------------------------------------------------------------------------------------------
....................................................GAGTGAGCGCGGCCTCGTA...................................................................................................................................................................................1914.004.00-----2.00-----------------------------------2.00-----------------------------------------------------------------------------------------------
.........................................CGGCGGCAGGTGAGTGAG...............................................................................................................................................................................................1814.004.00---------------------------------------------------------------1.00-1.00---------------------------1.00---------------------1.00---------------------
.............................................................CGGCCTCGTACTCGCGCGTGT........................................................................................................................................................................2113.006.00-1.001.00---------1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGCGTGCGT......................................................................................................................................................................2312.0017.00--------------------1.00--------------------------------------------------------------------------------------------------1.00-----------------
.............................................................CGGCCTCGTACTCGCGCG...........................................................................................................................................................................1812.002.00--1.00----------1.00---------------------------------------------------------------------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGCGTGCTT......................................................................................................................................................................2312.0017.00------------------------------------------1.00-----------------------------------------------------1.00----------------------------------------
.......................................................TGAGCGCGGCCTCGTAC..................................................................................................................................................................................1712.002.00----1.00---------------------------------------------------------------1.00--------------------------------------------------------------------
.......................................CGCGGCGGCAGGTGAGTGA................................................................................................................................................................................................1912.002.00----------------------------------------------------------------------1.00------------------------------1.00-----------------------------------
.....................................................................................CCGCAGGGGCGCCGCAGGCC.................................................................................................................................................2012.002.00-------------2.00---------------------------------------------------------------------------------------------------------------------------
.......................................CGCGGCGGCAGGTGAGTG.................................................................................................................................................................................................1812.002.00-----------------------------------------------1.00--------------------------1.00--------------------------------------------------------------
..................................................................................ACGCCGCAGGGGCGCCGC......................................................................................................................................................1812.002.00----------------2.00------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................CTTCCCGAGTCGGGTTGC.......................................182.000.00--------------------------------------------------------------------------------1.00-------------1.00------------------------------------------
.......................................CGCGGCGGCAGGTGAGTGAG...............................................................................................................................................................................................2012.002.00-------------------1.00---------1.00-----------------------------------------------------------------------------------------------------------
.......................................CGCGGCGGCAGGTGAGTGAAAA.............................................................................................................................................................................................2212.002.00-----2.00-----------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGAGCGCGGCCTCG.....................................................................................................................................................................................1911.001.00----------------------------------1.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CGGGAGGCTGCGGCGGAGAA................201.000.00-----------------------------1.00-----------------------------------------------------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGCGTGG........................................................................................................................................................................2111.006.00------------------------------------------------------------------------------------------------------------------------1.00----------------
....................................................GAGTGAGCGCGGCCTCGTACTCGT..............................................................................................................................................................................2411.001.00----------1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CGGGGCCCCAAGTCCCTCAGCGGA241.000.00---------------------------------------------------------1.00-------------------------------------------------------------------------------
......................................................GTGAGCGCGGCCTCGTACTCGCGCGTGCACG.....................................................................................................................................................................3111.001.00-----------------------------------------------------------------------1.00-----------------------------------------------------------------
.....................................GCCGCGGCGGCAGGTGAGTGAG...............................................................................................................................................................................................2211.001.00-------------------------------------------------------------1.00---------------------------------------------------------------------------
............................................................................................................................................................................................................GGGTGCGGGCCGGGAGGGG...........................191.000.00---------------------------------------------------------------------------------1.00-------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGCGCGCA.......................................................................................................................................................................2211.002.00--------------------1.00--------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................GCTGCGGCGGGGCCCTGGG...........191.000.00-------------------------------1.00---------------------------------------------------------------------------------------------------------
..................................................GTGAGTGAGCGCGGCCTCGTACTCG...............................................................................................................................................................................2511.001.00----------------------------------------------1.00------------------------------------------------------------------------------------------
......................................CCGCGGCGGCAGGTGAGTGAG...............................................................................................................................................................................................2111.001.00-----------------------------------------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................TTCGCTCTGGGACCCCGGC.........................................................................................................................1911.001.00-------------1.00---------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTGAGCGCGGCCTCGT....................................................................................................................................................................................2011.001.00------------------------------------------------------------------------------------------------------------------1.00----------------------
....................................................................................GCCGCAGGGGCGCCGCAGG...................................................................................................................................................1911.001.00-------------------------------------------------------------------------------1.00---------------------------------------------------------
................................................................CCTCGTACTCGCGCGTGCACGT....................................................................................................................................................................221.000.00---------------------------------------------------1.00-------------------------------------------------------------------------------------
....................................................GAGTGAGCGCGGCCTCGTG...................................................................................................................................................................................191.000.00------------------------------------------------------1.00----------------------------------------------------------------------------------
...................................AGGCCGCGGCGGCAGGTGAGTG.................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------1.00---------------------------------------------------------------------
............................GGGTGAGAGGCCGCGGCGGCATT.......................................................................................................................................................................................................231.000.00-------------------------------------------------------------------------------------1.00---------------------------------------------------
.......................................CGCGGCGGCAGGTGAGTGAGCG.............................................................................................................................................................................................2211.001.00-----------------------------------------------------------1.00-----------------------------------------------------------------------------
.................................................................................................................................CCCCAGGTTCCCCAGGAAT......................................................................................................191.000.00-----------------------------------------------------------------------------------------------------------------1.00-----------------------
............................................CGGCAGGTGAGTGAGCGCGGC.........................................................................................................................................................................................2111.001.00-------------------------------------------1.00---------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CGGGAGGCTGCGGCGGGT..................181.000.00-------------------------------------------------------------------------------------------------------------------------------1.00---------
.............................................................CGGCCTCGTACTCGCGCGTGCTA......................................................................................................................................................................2311.0017.00--------------------------------1.00--------------------------------------------------------------------------------------------------------
..............................................................................GTGCACGCCGCAGGG.............................................................................................................................................................1511.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CGGGAGGCTGCGGCGGGAGGC...............211.000.00----------------------------------1.00------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................CTTCCCGAGTCGGGTT.........................................161.000.00--------------------------------------------------------1.00--------------------------------------------------------------------------------
.........................................................AGCGCGGCCTCGTACTCG...............................................................................................................................................................................1811.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------------
...........................................................CGCGGCCTCGTACTCGCGCG...........................................................................................................................................................................2011.001.00---1.00-------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GGGAGGCTGCGGCGGGGGAAT..............211.000.00----------------------------------------------------------------------------1.00------------------------------------------------------------
..................................................................TCGTACTCGCGCGTGCACGCCGTT................................................................................................................................................................241.000.00--------------------------------1.00--------------------------------------------------------------------------------------------------------
.....GGGGCGGGGCCAGCGGCGGGG................................................................................................................................................................................................................................211.000.00--------------------------------------------------------------------------------------1.00--------------------------------------------------
.....................................................AGTGAGCGCGGCCTCGT....................................................................................................................................................................................1711.001.00--------------------------------------1.00--------------------------------------------------------------------------------------------------
...................................................................CGTACTCGCGCGTGCACGCCGCAGGGG............................................................................................................................................................2711.001.00--------------------------------------------------------------------------------------------1.00--------------------------------------------
......................................................................................................................................................................................................................CGGGAGGCTGCGGCGGGCGTC...............211.000.00---------------------------------------------------------------------------------------------------------------------1.00-------------------
............................................................................................................................................................................................................................GCTGCGGCGGGGCCCTGAG...........191.000.00-------------------------------1.00---------------------------------------------------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGC............................................................................................................................................................................1711.001.00----1.00------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................CCCTCGGCCCCTGGAGGACCCCGC.................................................................................2411.001.00----1.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................CCGGGAGGCTGCGGCGGGGCCCCAAGTCCCT......3111.001.00----------------------------1.00------------------------------------------------------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGCGTGCAG......................................................................................................................................................................2311.0015.00----1.00------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................AGGGGCGCCGCAGGCCGC...............................................................................................................................................1811.001.00-------1.00---------------------------------------------------------------------------------------------------------------------------------
..............................................................................................CGCCGCAGGCCGCCCTCCC.........................................................................................................................................191.000.00--------------------------------------------------------------------------------------------------------------1.00--------------------------
...........................................................................................GGGCGCCGCAGGCCGCCCCTTCGCTCTGGGACC..............................................................................................................................3311.001.00---------------------1.00-------------------------------------------------------------------------------------------------------------------
.................................................GGTGAGTGAGCGCGGCC........................................................................................................................................................................................1711.001.00------------------------1.00----------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................GTCGGGTGCGGGCCGGGAGGCTG..........................2311.001.00----------------------------------------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................TCGGCCCCTGGAGGACCCCGCCG...............................................................................2311.001.00------------------------1.00----------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TCCCCAGTCCCTCGGTC................................................................................................171.000.00-----------------------------------------------1.00-----------------------------------------------------------------------------------------
............................................................GCGGCCTCGTACTCGCGCGTGCT.......................................................................................................................................................................231.000.00-----------------------------------------------------------------------------------1.00-----------------------------------------------------
........................................................................................................................................................CCCCTGGAGGACCCCGCCGTGC............................................................................2211.001.00--------------1.00--------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................CGGGAGGCTGCGGCGGGCGG................201.000.00-------------------------------------------------------------------------------------------1.00---------------------------------------------
....................................................GAGTGAGCGCGGCCTCGTACTCG...............................................................................................................................................................................2311.001.00---------------------1.00-------------------------------------------------------------------------------------------------------------------
...................................AGGCCGCGGCGGCAGGTGA....................................................................................................................................................................................................1911.001.00------------------------------------------------------------------------1.00----------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCG.............................................................................................................................................................................1611.001.00-------1.00---------------------------------------------------------------------------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGCGTGCACAA....................................................................................................................................................................2511.009.00-1.00---------------------------------------------------------------------------------------------------------------------------------------
.............................................................CGGCCTCGTACTCGCGCGTGCATT.....................................................................................................................................................................2411.0015.00-------------------------1.00---------------------------------------------------------------------------------------------------------------
...................................................................................................................................................CTCGGCCCCTGGAGGACCC....................................................................................1920.500.50------------------------------------------------0.50----------------------------------------------------------------------------------------
...................................................................................................................................................CTCGGCCCCTGGAGGAC......................................................................................1720.500.50---0.50-------------------------------------------------------------------------------------------------------------------------------------
............................GGGTGAGAGGCCGCG...............................................................................................................................................................................................................1540.500.50-------0.25-------------------------------------------0.25-------------------------------------------------------------------------------------
................................................................................................................CGCTCTGGGACCCCGG..........................................................................................................................1620.500.50---------------------------0.50-------------------------------------------------------------------------------------------------------------
..................................................................................................GCAGGCCGCCCCTTCG........................................................................................................................................1630.330.33-------------------------------------------------0.33---------------------------------------------------------------------------------------
...........................CGGGTGAGAGGCCGC................................................................................................................................................................................................................1540.250.25----------------------------------------------------------------------------------------------------------------------------------0.25------

Antisense strand
GCCAGGGGGCGGGGCCAGCGGCGCGGTCGGGTGAGAGGCCGCGGCGGCAGGTGAGTGAGCGCGGCCTCGTACTCGCGCGTGCACGCCGCAGGGGCGCCGCAGGCCGCCCCTTCGCTCTGGGACCCCGGCCCCCAGGTTCCCCAGTCCCTCGGCCCCTGGAGGACCCCGCCGTGCTGCCCCCTAGCTCCTCCGCCTTCCCGAGTCGGGTGCGGGCCGGGAGGCTGCGGCGGGGCCCCAAGTCCCTCAGCGG
........................................................(((((((((...((((......))))..))))).((((((((...))).)))))...)))).(((........)))......................................................................................................................
........................................................57..........................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR038859(GSM458542)
MM386. (cell line)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR191625(GSM715735)
32genomic small RNA (size selected RNA from t. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189783SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR038855(GSM458538)
D10. (cell line)
................................................................................................................................................TCCCTCGGCCCCTGGAGCGA...................................................................................... 206.000.00-----------------2.00--------3.00-------------------------------------------------------------1.00------------------------------------------------
........GCGGGGCCAGCGGCGCG................................................................................................................................................................................................................................. 174.000.00---------------------1.00--------------------------------------1.00------------------------------------1.00------------------------1.00--------------
.........CGGGGCCAGCGGCGCGC................................................................................................................................................................................................................................ 172.000.00---------------------------2.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................GGGGGCAGCACGGCGGGGTC..................................................................... 2012.002.00-------------------------------------1.00--1.00------------------------------------------------------------------------------------------------
................................................................................................................................................TCCCTCGGCCCCTGGAGCG....................................................................................... 192.000.00-----------------1.00-------------------------------------------------------------------------------------------1.00---------------------------
.....................................................................................................................................................................................................................................GCTGAGGGACTTGGGGCCC.. 1912.002.00---2.00-------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................TCCCTCGGCCCCTGGAGC........................................................................................ 182.000.00-------------------------------------------------------1.00----------------------1.00----------------------------------------------------------
.......................................................................................................................................................................................GCTCCTCCGCCTTCCGGGT................................................ 191.000.00----------------------------------------------------------------------------------1.00------------------------------------------------------
.CCAGGGGGCGGGGCCTCTG...................................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------------------------------------------1.00--------------------------------------
..............................................................................................................................................................................TGCCCCCTAGCTCCTCTG.......................................................... 181.000.00---------------------------------1.00-------------------------------------------------------------------------------------------------------
...........GGGCCAGCGGCGCGGT............................................................................................................................................................................................................................... 161.000.00----------------------------------------------------1.00------------------------------------------------------------------------------------
..............................................CGCGCTCACTCACCTGC........................................................................................................................................................................................... 1711.001.00--------------------------------------------------1.00--------------------------------------------------------------------------------------
........GCGGGGCCAGCGGCGCGC................................................................................................................................................................................................................................ 181.000.00---------------------------------------------------------------------1.00-------------------------------------------------------------------
..........................................................................................................................................................................GTGCTGCCCCCTAGCTCCTCCGCAA....................................................... 251.000.00------------------------------------------------------------------------------------------1.00----------------------------------------------
.......GGCGGGGCCAGCGGCGCG................................................................................................................................................................................................................................. 181.000.00------------------------1.00----------------------------------------------------------------------------------------------------------------
..........................................................................................GGGGCGCCGCAGGCCGGGG............................................................................................................................................. 191.000.00------------------------------------------------------------------------------------------------------------------------------1.00----------
................................................................................................................................................TCCCTCGGCCCCTGGAG......................................................................................... 171.000.00-------1.00---------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................GCCCCCAGGTTCCCCGG.......................................................................................................... 171.000.00-------------------------------------------------------------------------------------------------------------------------1.00---------------
......................................................................................................................................................................................................................................GCTGAGGGACTTGGGGCC.. 1811.001.00---------------------------------------1.00-------------------------------------------------------------------------------------------------
......................................................GTGAGCGCGGCCTCGTAAT................................................................................................................................................................................. 191.000.00-------------------------------------------------1.00---------------------------------------------------------------------------------------
........GCGGGGCCAGCGGCGCGCG............................................................................................................................................................................................................................... 191.000.00------------------------------------------------------------------------------------1.00----------------------------------------------------
.....GGGGCGGGGCCAGCGGCGCGCA............................................................................................................................................................................................................................... 221.000.00----------------------------------------------------------------------------------------------------------------1.00------------------------
................................................................................................................................................................GGACCCCGCCGTGCTACA........................................................................ 181.000.00-----------------------------------------------------------------------------------------1.00-----------------------------------------------
........................................................................................................................GACCCCGGCCCCCAGGCA................................................................................................................ 181.000.00------------1.00----------------------------------------------------------------------------------------------------------------------------
........GCGCCGCTGGCCCCGC.................................................................................................................................................................................................................................. 1630.670.67--------------------------------------------------0.33------------------------------------------------------------------------------0.33-------
......................................................................................................GAGCGAAGGGGCGGC..................................................................................................................................... 1530.330.33--------------------------------------------------------------------------------------------------------------------------------0.33--------
..........................................................................................................................................GCCGAGGGACTGGGG................................................................................................. 1560.330.33------------------------------------------------------------------------------------------------------------------------------------0.17--0.17-
....................................................................................CGGCGCCCCTGCGGC....................................................................................................................................................... 1550.200.20----------------------------------------------------0.20------------------------------------------------------------------------------------
..........................................................................................................................................CCCCAGTCCCTCGGCTAA.............................................................................................. 180.170.00-----------------------------------------------------0.17-----------------------------------------------------------------------------------
.......................................................................................................................................................................................GGGAAGGCGGAGGAGC................................................... 1660.170.17-------------------------------------------------------------------------------------------------------------------------------------0.17---
..........................................................................................................................................CCCCAGTCCCTCGGCTTCT............................................................................................. 190.170.00--------------------------------------------------------------------------------------------------------------------------------------0.17--
.................................................................................................................................................TCCAGGGGCCGAGGG.......................................................................................... 1560.170.17--0.17--------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................CCCCAGTCCCTCGGCGAG.............................................................................................. 180.170.00-----------------------------------------------------------------------------------------------------------------------------------0.17-----
..........................................................................................................................................CCCCAGTCCCTCGGCGTGT............................................................................................. 190.170.00----------------------------------------------------------------------------------------------------------------------------------------0.17