ID: uc010bnp.1_intron_10_0_chr15_89816701_f.3p
GENE: FANCI(11)
chr15:89817199-89817448+


(3)
BREAST
(10)
CELL-LINE
(1)
OTHER
(2)
SKIN
(1)
XRN.ip

Sense strand
TTTTTGTAACATCTTCATCTAGTTAAAATAGTTGTCATAGGGATATATGTGAATGGCAGCTCATAGGAACAGTTATAAGGTTAAGATTTATAGCATGAGCTATATAATATTTGCTTTATTTTCTTATTTCTTTCATTCTGTTAGGTGCTTGATCTTTTATTTATTTATTTTTTCATTTATTTTTATTAACTATACTCAAGGTGCTTGATCTTTTAAAGACTTCGGTTGTAAAGAGCTTTAAGGATCTTCA
................................................................................................((((............)))).........................((((((..(((....)))..))))))...................................................................................
..............................................................................................95................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577740(Rovira)
total RNA. (breast)
SRR189785TAX577741(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR189784
...................................................................................................CTATATAATATTTGCTTTATTT.................................................................................................................................22123.0023.0023.00-----------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTTAT......................................................................29115.0015.008.006.001.00---------------
.............................................................................................................................................................................CATTTATTTTTATTAACTATACTCAAG..................................................2717.007.00-4.001.00-2.00-------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTTAC......................................................................295.000.001.002.00-2.00--------------
........................................................................................................................................................................TTTTTCATTTATTTTTACAAG.............................................................214.000.00-2.00--2.00-------------
...................................................................................................CTATATAATATTTGCTTTACTT.................................................................................................................................224.000.004.00-----------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTCTTG..........................................................................254.000.00-1.001.00-1.001.00------------
..............................................................................................................................................................................ATTTATTTTTATTAACTATACTCAAG..................................................2614.004.001.003.00----------------
.................................................................................................................CTTTATTTTCTTATTTCAAG.....................................................................................................................204.000.00-3.001.00---------------
...................................................................................................CTATATAATATTTGCTTTATTC.................................................................................................................................223.000.003.00-----------------
..........................................................................................................................................................................................................................ACTTCGGTTGTAAAGAGCT.............1913.003.00-------3.00----------
...................................................................................................CTATATAATATTTGCTTTATCT.................................................................................................................................223.000.003.00-----------------
..........................................................................................................................................................................TTTCATTTATTTTTATTAACTATACTCAAG..................................................3013.003.001.002.00----------------
.................................................................................................................CTTTATTTTCTTATTTCTTTCATTCTGCTAG..........................................................................................................3112.002.002.00-----------------
....................................................................................................................................................................................................................TTAAAGACTTCGGTTGTAAAGAGCTT............2612.002.00--------2.00---------
........................................................................................................................................................................TTTTTCATTTATTTTTATTAACTATACTCAAG..................................................3212.002.00-2.00----------------
..............................................................................................................................................................ATTTATTTATTTTTTCATTTATTTTGCC................................................................282.000.00---2.00--------------
...........................................................................................................................................................TTTATTTATTTATTTTTTCATTTTG......................................................................252.000.00----1.001.00------------
.........................................................................................................................................................................TTTTCATTTATTTTTATTAACTATACTCAAG..................................................3112.002.00-1.001.00---------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTCAC......................................................................292.000.001.001.00----------------
...................................................................................................................................................CTTGATCTTTTATTTATTTATTTTTTCATT.........................................................................3012.002.00---2.00--------------
.................................................................................................................CTTTATTTTCTTATTTCTTTCATTCTG..............................................................................................................2712.002.00--2.00---------------
..............................................................................................................................................................................................................................CGGTTGTAAAGAGCTTTAAGGATCT...2511.001.00--------------1.00---
.............................................................................................................................................................TATTTATTTATTTTTTCATTTGGTG....................................................................251.000.00---1.00--------------
.................................................................................................................CTTTATTTTCTTATTTCTTTCATTCTGTCAG..........................................................................................................311.000.00--1.00---------------
............................................................................................................................................................TTATTTATTTATTTTTTCATTTGGTG....................................................................261.000.00---1.00--------------
........................................................................................................................................................TCTTTTATTTATTTATTTTTTATTG.........................................................................251.000.00-1.00----------------
.................................................................................................................................................................TATTTATTTTTTCATTTATTTTGCC................................................................251.000.00------1.00-----------
.....................................................................................................................................................TGATCTTTTATTTATTTATTTTATTT...........................................................................261.000.00---1.00--------------
..............................................................................................................................................................ATTTATTTATTTTTTCATAG........................................................................201.000.00-----1.00------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTTATTT....................................................................3111.001.001.00-----------------
........................................................................................................................................................TCTTTTATTTATTTATTTTTCCAT..........................................................................241.000.00----1.00-------------
..............................................................................................................................................................................ATTTATTTTTATTAACTATACTCAA...................................................2511.001.00--1.00---------------
...................................................................................................CTATATAATATTTGCTTTTTTC.................................................................................................................................221.000.001.00-----------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATG.........................................................................2611.001.00----1.00-------------
.............................................................................................................................................................TATTTATTTATTTTTTCATTGGGA.....................................................................241.000.00------1.00-----------
...........................................................................................................................TTATTTCTTTCATTCTGTTAGG.........................................................................................................2211.001.00---1.00--------------
...........................................................................................................................................................TTTATTTATTTATTTTTTCATTTGGG.....................................................................261.000.00------1.00-----------
.........................................................................................................................................................CTTTTATTTATTTATTTTTTCATTTAT......................................................................2711.001.00--1.00---------------
...........................................................................................................................................................TTTATTTATTTATTTTTTCAATAG.......................................................................241.000.00--1.00---------------
.........................................................................................................................................................CTTTTATTTATTTATTTTTTCATTTA.......................................................................2611.001.00-1.00----------------
..............................................................................................................................................................ATTTATTTATTTTTTCATTTATTTATTG................................................................281.000.001.00-----------------
......................................................................................................................................................................ATTTTTTCATTTATTTTTATTAACTATAC.......................................................2911.001.001.00-----------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCACTT........................................................................271.000.00---1.00--------------
...................................................................................................................................................................TTTATTTTTTCATTTATCTAA..................................................................211.000.001.00-----------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTATG..........................................................................251.000.00--1.00---------------
.......................................................................................................................................................ATCTTTTATTTATTTATTCTTG.............................................................................221.000.00----1.00-------------
.............................................................................................................................................................TATTTATTTATTTTTTCATTTATTTTTATTAA.............................................................3211.001.00-----1.00------------
...................................................................................................................................................................TTTATTTTTTCATTTATTTTTACG...............................................................241.000.00--1.00---------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTTATTTTTA.................................................................3411.001.00-----1.00------------
.............................................................................................................................................TAGGTGCTTGATCTTTTATTTATTTATTTTTCC............................................................................331.000.00---1.00--------------
......................................................................................................................................................................ATTTTTTCATTTATTTTTATTAACTATACTAA....................................................321.000.00-----1.00------------
.................................................................................................................CTTTATTTTCTTATTTCTTTCCTG.................................................................................................................241.000.00--1.00---------------
............................................................................................................................................................TTATTTATTTATTTTTTCATAAG.......................................................................231.000.00-1.00----------------
........................................................................................................................................................TCTTTTATTTATTTATCTAG..............................................................................201.000.00--1.00---------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTT........................................................................2711.001.00---1.00--------------
...................................................................................................CTATATAATATTTGCTTTATGT.................................................................................................................................221.000.001.00-----------------
..............................................................................................................................................................................ATTTATTTTTATTAACTATACTCAAT..................................................2611.001.00-----1.00------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTTATTTTT..................................................................3311.001.00--1.00---------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATCTCT......................................................................2911.001.001.00-----------------
.........................................................................................................................................................................TTTTCATTTATTTTTATATAG............................................................211.000.00------------1.00-----
........................................................................................................................................................TCTTTTATTTATTTATTTTTTCAG..........................................................................241.000.00-1.00----------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCAT..........................................................................2511.001.001.00-----------------
.................................................................................................................CTTTATTTTCTTATTTCTTTCATCCTG..............................................................................................................271.000.00--1.00---------------
..........................................................................................................................................TGTTAGGTGCTTGATC................................................................................................1611.001.00---1.00--------------
...........................................................................................................................................................TTTATTTATTTATTTTTTCATTTAGA.....................................................................261.000.00---1.00--------------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATCTAT......................................................................2911.001.00--1.00---------------
......................................................................................................................................................................................................................AAAGACTTCGGTTGTGGG..................181.000.00-----------1.00------
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTCAT......................................................................291.000.00-1.00----------------
....................................................................................................................................................................TTATTTTTTCATTTATTTTGATT...............................................................231.000.001.00-----------------
.......................................................................................................................................................................................................................AAGACTTCGGTTGTAAAGAGCT.............2211.001.00---------------1.00--
.......................................................................................................................................................ATCTTTTATTTATTTATTTTTTCATTCA.......................................................................281.000.001.00-----------------
...............................................................................................................................................................TTTATTTATTTTTTCATTTATTTTTAT................................................................2711.001.00-1.00----------------
..................................................................................................................................................................ATTTATTTTTTCATTTATTTTTGAG...............................................................251.000.00------1.00-----------
...........................................................................................................................................................................TTCATTTATTTTTATTAATTCA.........................................................221.000.00----------1.00-------
...................................................................................................CTATATAATATTTGCTTTACTC.................................................................................................................................221.000.001.00-----------------
..............................................................................................................................................................ATTTATTTATTTTTTCATTTTTAG....................................................................241.000.00---1.00--------------
.................................................................................................................CTTTATTTTCTTATTTCTTTCATTCTTTAG...........................................................................................................301.000.00-----1.00------------
.............................................................................................................................................................................CATTTATTTTTATTAACTATACTCAA...................................................2611.001.00-1.00----------------
.....................................................................................................ATATAATATTTGCTTTATTT.................................................................................................................................2020.500.500.50-----------------
..............................................................ATAGGAACAGTTATAA............................................................................................................................................................................1620.500.50-----------------0.50
.........................................................................................................................................................CTTTTATTTATTTATTTTTTCATTT........................................................................2530.330.33--0.33---------------

Antisense strand
TTTTTGTAACATCTTCATCTAGTTAAAATAGTTGTCATAGGGATATATGTGAATGGCAGCTCATAGGAACAGTTATAAGGTTAAGATTTATAGCATGAGCTATATAATATTTGCTTTATTTTCTTATTTCTTTCATTCTGTTAGGTGCTTGATCTTTTATTTATTTATTTTTTCATTTATTTTTATTAACTATACTCAAGGTGCTTGATCTTTTAAAGACTTCGGTTGTAAAGAGCTTTAAGGATCTTCA
................................................................................................((((............)))).........................((((((..(((....)))..))))))...................................................................................
..............................................................................................95................................................................................................193.......................................................
SizePerfect hitTotal NormPerfect NormSRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577740(Rovira)
total RNA. (breast)
SRR189785TAX577741(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR189784
...........................................................................................................................................................................................AACTATACTCAAGGTGT.............................................. 171.000.00---------1.00--------
................ATCTAGTTAAAATAGTTCAT...................................................................................................................................................................................................................... 201.000.001.00-----------------
....................................................................................................................................................................................................CAAGGTGCTTGATCTGAC.................................... 181.000.00----------------1.00-
...............................................................................................................................TTCTTTCATTCTGTTACTTG....................................................................................................... 201.000.00-------------1.00----