ID: uc010apx.1_intron_9_0_chr14_64564865_f.3p
GENE: SYNE2(10)
chr14:64565265-64565514+


(1)
AGO2.ip
(3)
B-CELL
(1)
BREAST
(11)
CELL-LINE
(2)
HEART
(3)
HELA
(1)
LIVER
(1)
OTHER
(12)
SKIN

Sense strand
AATAACAAGACCTAAGGTTTGACTGACTCCGGATATCTGGCTGGAGGAGCTGAACGGACCAGGAGACAGGCTTCTTGTGGGGGTGGGCATCTTGGATAAAGTAAGTAAAAAATTAGCTACATAAAAATGCAGCTGGACTGGGATCTTGGTGATGTTGACTGGCAAGCAGACTGCAGGTATTCTTGTGCTGTGCCTTTCAGTTGAACAGAAGAGGCTCCATGTCTTACCTGGCAGCAGTCGAGGAAGAGGT
......................................................(((.((((((.....(((((.....))))).....)))))).................((((((.(((....))).)))))).)))..............................................................................................................
..................................................51.............................................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782SRR038855(GSM458538)
D10. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335
..........................................................................................................................AAAAATGCAGCTGGACAAGA............................................................................................................2012.000.009.00-----1.00---------1.001.00------------------
..............................................................................................................................ATGCAGCTGGACTGGGATCTTGGTGATGTTGACTGGCAAGCAGACTGCAGGTATTCTTGTGCTGTGCCTTTCAG..................................................74110.0010.00-10.00----------------------------------
..................................................................................GTGGGCATCTTGGATAAAGTAAG.................................................................................................................................................2316.006.00--6.00---------------------------------
...........................................................................................................................AAAATGCAGCTGGACAAG.............................................................................................................184.000.002.00-----2.00-----------------------------
................................................................................................................................................................GGCAAGCAGACTGCAGGTATTCTTG.................................................................2514.004.00-----2.00--------------1.00-----------1.00---
....................................................................................................................................CTGGACTGGGATCTTGGTGATGTTGACTGGCAAGCAGACTGCAGGTATTCTTGTGCTGTGCCTTTCAG..................................................6813.003.00---3.00--------------------------------
..........................................................................................................................AAAAATGCAGCTGGACATC.............................................................................................................193.000.00----3.00-------------------------------
....................................................................................................GTAAGTAAAAAATTAGCTACATAAAAATGCAGCTGGACTGGGATCTTGGTGATGTTGACTGGCAAGCAGACTGCAGGTATTCTTGTGCTGTGCCTTTCAGT.................................................10113.003.00---3.00--------------------------------
..................................................................................................................................................................................................................GAGGCTCCATGTCTTACCTGGCAGC...............2512.002.00-------2.00----------------------------
..........................................................................................................................AAAAATGCAGCTGGACAAG.............................................................................................................192.000.002.00-----------------------------------
....................................................................................................................................................................AGCAGACTGCAGGTATTCTT..................................................................2012.002.00----------2.00-------------------------
.....................................................................................................................................................................................................CAGTTGAACAGAAGAGGC...................................1811.001.00--------------------------1.00---------
...............................................................AGACAGGCTTCTTGTGGGGGTGGGC..................................................................................................................................................................2511.001.00---------1.00--------------------------
.....................................................................................................................................................TGATGTTGACTGGCAAGCA..................................................................................1911.001.00--------1.00---------------------------
............................................AGGAGCTGAACGGACCAGGAGACAGGCTC.................................................................................................................................................................................291.000.00------------------------1.00-----------
.....................................................ACGGACCAGGAGACAGG....................................................................................................................................................................................1711.001.00-----------1.00------------------------
...............................................................................................................................................TCTTGGTGATGTTGACTGGCAAGCAGA................................................................................2711.001.00--------1.00---------------------------
........................................................................................................................................................TGTTGACTGGCAAGCAGACTGCAGGT........................................................................2611.001.00-------------------------1.00----------
........................................CTGGAGGAGCTGAACTCTG...............................................................................................................................................................................................191.000.00----------------------------1.00-------
...................................TCTGGCTGGAGGAGCTGAACGGACC..............................................................................................................................................................................................2511.001.00------------------1.00-----------------
.............................................................................................................................................................ACTGGCAAGCAGACTGAA...........................................................................181.000.00--------------1.00---------------------
....................................................................................................GTAAGTAAAAAATTAGCTACATAAAAATGCAGCTGGACTGGGATCTTGGTGATGTTGACTGGCAAGCAGACT..............................................................................7211.001.00------------1.00-----------------------
..............................................................................................................................................................................................................AGAAGAGGCTCCATGTCTTACCTGGCAG................2811.001.00---------------------------1.00--------
..........................................................................................................................................................TTGACTGGCAAGCAGACTGCAGGGA.......................................................................251.000.00----------------------1.00-------------
.............................CGGATATCTGGCTGGAGGA..........................................................................................................................................................................................................1911.001.00---------1.00--------------------------
.........................................................................................................................................................GTTGACTGGCAAGCAGACTGCAGAA........................................................................251.000.00-----1.00------------------------------
.............AAGGTTTGACTGACTCCGGATATCTGG..................................................................................................................................................................................................................2711.001.00-----------------------------1.00------
..........................................................................................................................................................................CTGCAGGTATTCTTGTCATG............................................................201.000.00---------------------1.00--------------
....................................................................................................................................................................................................................................TGGCAGCAGTCGAGGAAGAGGT2211.001.00-------------------------------1.00----
...........................................................................................................................................GGGATCTTGGTGATGT...............................................................................................1621.001.00-----------------------1.00------------
...................................................................................................................................................GGTGATGTTGACTGGAA......................................................................................171.000.00-------------------1.00----------------
.........................................................................................................................................................GTTGACTGGCAAGCAGACTGCAGGTA.......................................................................2611.001.00-------------1.00----------------------
...........................................................................................................................AAAATGCAGCTGGACTGGG............................................................................................................1911.001.00------------------------------1.00-----
.........................................................................................................................................................GTTGACTGGCAAGCAGACTGC............................................................................2111.001.00---------------1.00--------------------
...........................................................................................................................AAAATGCAGCTGGACAAGA............................................................................................................191.000.001.00-----------------------------------
....................................................................................................................................CTGGACTGGGATCTTG......................................................................................................1620.500.50---------------------------------0.50--
...................................................................................TGGGCATCTTGGATAAA......................................................................................................................................................1720.500.50----------------------------------0.50-
...................................................................................................................................................................AAGCAGACTGCAGGT........................................................................1530.330.33-----------0.33------------------------

Antisense strand
AATAACAAGACCTAAGGTTTGACTGACTCCGGATATCTGGCTGGAGGAGCTGAACGGACCAGGAGACAGGCTTCTTGTGGGGGTGGGCATCTTGGATAAAGTAAGTAAAAAATTAGCTACATAAAAATGCAGCTGGACTGGGATCTTGGTGATGTTGACTGGCAAGCAGACTGCAGGTATTCTTGTGCTGTGCCTTTCAGTTGAACAGAAGAGGCTCCATGTCTTACCTGGCAGCAGTCGAGGAAGAGGT
......................................................(((.((((((.....(((((.....))))).....)))))).................((((((.(((....))).)))))).)))..............................................................................................................
..................................................51.............................................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782SRR038855(GSM458538)
D10. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR343335
.............................CCAGCCAGATATCCG.............................................................................................................................................................................................................. 1520.500.50-----------------------------------0.50