ID: uc009zfu.1_intron_0_0_chr12_7342128_f
GENE: (1)
chr12:7342078-7342667+


(4)
AGO2.ip
(10)
B-CELL
(1)
BRAIN
(9)
BREAST
(25)
CELL-LINE
(15)
CERVIX
(5)
HEART
(2)
HELA
(1)
KIDNEY
(4)
LIVER
(2)
OTHER
(1)
OVARY
(1)
RRP40.ip
(16)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
GGCCTTTTCGAGCGCTCCTAAAGGCGACTCTCCAAGACCCGCTCTCTAAGGTGCTCTTCCCCTTTAAGACTCACGGCTCTTCCCGTCAGGCTGCGTCGCAGTCTTAAGGCCCCGCCTTTTCAGACAGCTTCCGCTGGGCCTGGGCCGCTGCGGGGCGGTCACGGCCCCTTTAAGCCTGAGCCCCGCCCCCTGGCTCCCCGCCCCCTCTTCTCCCCTCCCCCAAGCCAGCACCTGGTGCCCCGGCGGGTCGTGCGGCGCGGCGCTCCGCGGTGAGCGCCTGACCCCGAGGGGGCCCGGGGCCGCGTCCCTGGGCCCTCCCCACCCTTGCGGTGGCCTCGCGGGTCCCAGGGGCGGGGCTGGAGCGGCAGCAGGGCCGGGGAGATGGGCGGTGGGGAGCGCGGGAGGGACCGGGCCGAGCCGGGGGAAGGGCTCCGGTGACTTAAGGGGAGGGAATGCTCCTCTGCCGTGCTCACCGCGTGCTGGGGCTGCGCGGGGCTAGGTATGGTCGGGCTGTTTTCCCACTGTCCCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAAGCGTCCCCGTGGTCCCCCGGGGTC
.........................................................................................................................................................................................................................................((.(((((..(((((((.(((.(((.(((...))).)))..))).))))).))..))))))).......................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................230..............................................................295.....................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040028(GSM532913)
G026N. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040031(GSM532916)
G013T. (cervix)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM532884(GSM532884)
G871T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR040007(GSM532892)
G601T. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532890(GSM532890)
G576T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR189786SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM379268(GSM379268)
Small RNA from serous ovarian cancer tissue. (ovary)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM532888(GSM532888)
G761T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................................................................GTGCCCCGGCGGGTCGTGCGG...............................................................................................................................................................................................................................................................................................................................................2115.005.00-4.00------------------------------------------------------------------------------------1.00----------
.................................................................................................................................................................................................................................................................................GCGCCTGACCCCGAGGGC...........................................................................................................................................................................................................................................................................................................184.000.00--4.00----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................ACCCTTGCGGTGGCCTCGCGGG........................................................................................................................................................................................................................................................2214.004.004.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................CGGCGGGTCGTGCGGCGC............................................................................................................................................................................................................................................................................................................................................1814.004.00-4.00-----------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTGGGGCTGCGCGGGGCTAG...........................................................................................2314.004.00----4.00--------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTAGGTATGGTCGGG................................................................................1813.003.00--2.00--------------------------1.00-------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTAGGTATGGTCGGGC...............................................................................1913.003.002.00--1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGCTGCGCGGGGC..............................................................................................1682.502.50----------2.50--------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................GCGGGTCGTGCGGCGGC...........................................................................................................................................................................................................................................................................................................................................172.000.00-------2.00-----------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGCGCGGGGCTAGGT.........................................................................................1912.002.00-------------------2.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................CCCGAGGGGGCCCGGG....................................................................................................................................................................................................................................................................................................1612.002.00--------2.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CGGGTCGTGCGGCGCGGC.........................................................................................................................................................................................................................................................................................................................................1812.002.00-----------1.00--1.00----------------------------------------------------------------------------------
......................................................................................................................................................................................CCGCCCCCTGGCTCCGCG......................................................................................................................................................................................................................................................................................................................................................................................................182.000.00--------------------1.00----1.00-----------------------------------------------------------------------
.............................................................................................................................................................................................................................................CCCCGGCGGGTCGTGCGG...............................................................................................................................................................................................................................................................................................................................................1812.002.00--------------1.00--------------------------------------------------------------------1.00-------------
........................................................................................................................................................................................................................................................CGTGCGGCGCGGCGCTCGGCG.................................................................................................................................................................................................................................................................................................................................211.000.00------------------1.00------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CGGGTCGTGCGGCGCGGCGCT......................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------------------1.00--------------------------------------------------------------
.............................................................................................................................................GGGCCGCTGCGGGGCTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00---------------------------------------------------------------1.00---------------------------------
......................................................................................................................................................................................................................................................GTCGTGCGGCGCGGCGCTCCGCGG................................................................................................................................................................................................................................................................................................................................2411.001.00---------------------------------------------------1.00---------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCGGGGCTAGGAA........................................................................................171.000.00------------1.00------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................GGGGGCCCGGGGCCGCG..............................................................................................................................................................................................................................................................................................1711.001.00-------------------------------------------1.00-----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCGCGGGAGGGATTT....................................................................................................................................................................................191.000.00---------1.00---------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................CGCGGGAGGGACCGGGGTCC..............................................................................................................................................................................201.000.00-----------------------------------------1.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATGGTCGGGCTGTTTTCC.......................................................................2211.001.001.00------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................CCGAGGGGGCCCGGGC...................................................................................................................................................................................................................................................................................................161.000.00------------------------------------------1.00------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................CGGGGCTGGAGCGGCAGCAGGGC........................................................................................................................................................................................................................2311.001.00---------------------------------1.00---------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGCGGGGCTAGGTAT.......................................................................................1911.001.00---1.00---------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGCGGGGCTAGGTA........................................................................................1711.001.00------------1.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................CCCGGCGGGTCGTGCGGCG.............................................................................................................................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------------1.00-----------------
..................................................................................................................................................................................................................................................GCGGGTCGTGCGGCGCGGCGCT......................................................................................................................................................................................................................................................................................................................................2211.001.00----------------------------------------------------------1.00--------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGGGCTAGGTATGGTC...................................................................................1911.001.00--------------------------------------1.00----------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................CCGGGGAGATGGGCGAGC.......................................................................................................................................................................................................181.000.00---------------------------------------------1.00---------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGACTTAAGGGGAG.............................................................................................................................................1811.001.00---1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................GGAGCGCGGGAGGGACCGGGCCGAA.............................................................................................................................................................................251.000.00---------------------------------------1.00---------------------------------------------------------
.......................................................................................................................................................................................................................................CTGGTGCCCCGGCGGGTCGTG..................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------------------------------------------------1.00------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGGGAGCGCGGGACCT........................................................................................................................................................................................201.000.00-------------------------------------------------1.00-----------------------------------------------
..................................................................................................................................................................................................................................AGCACCTGGTGCCCCGGCGG........................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------1.00----------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGGGGCTAGGTATGGCCGG.................................................................................231.000.00-----------------------------------------------------------------------------1.00-------------------
.........................................................................................................................................................................................................................................................................................CCCCGAGGGGGCCCGCCGG..................................................................................................................................................................................................................................................................................................191.000.00----------------1.00--------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................GCGGGTCGTGCGGCGCGGCGC.......................................................................................................................................................................................................................................................................................................................................2111.001.00--------------------------------------------------------------1.00----------------------------------
...................................................................................................................................................................................................................................................................................GCCTGACCCCGAGGGGCG.........................................................................................................................................................................................................................................................................................................181.000.00------------------------1.00------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GGCGGGGCTGGAGCGTGCT..............................................................................................................................................................................................................................191.000.00--------------------------------------------------------------------1.00----------------------------
..............................................................................................................................................................................................................................................CCCGGCGGGTCGTGCGGCGCGG..........................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------1.00-------------------------------------------
..........................................................................................................................................................................................................................................GTGCCCCGGCGGGTCGTG..................................................................................................................................................................................................................................................................................................................................................1811.001.00---------1.00---------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................GCGGGTCGTGCGGCGCGGC.........................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------1.00------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................GGGGCGGGGCTGGAGCATT................................................................................................................................................................................................................................191.000.00----------------------------------------------------------------------------1.00--------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCAGTGTCGCCGGC........................................171.000.00------------------------------------------------------1.00------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TGGGGAGCGCGGGAGGGC.......................................................................................................................................................................................181.000.00-------------------------------------------------------------1.00-----------------------------------
..............................................................................................................................................................................................................................................................................................................................................................GCGGGGCTGGAGCGGCA...............................................................................................................................................................................................................................1711.001.00------------------1.00------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................GGAGATGGGCGGTGGGGA...................................................................................................................................................................................................1811.001.00--------------------------------1.00----------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................CGGGAGGGACCGGGCAACC.............................................................................................................................................................................191.000.00------------------------1.00------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................CCGGGGCCGCGTCCCCGGG......................................................................................................................................................................................................................................................................................191.000.00--------------------------------------------------------1.00----------------------------------------
..................................................................................................................................................................................................................................................................................CGCCTGACCCCGAGGGC...........................................................................................................................................................................................................................................................................................................171.000.00----------------------------1.00--------------------------------------------------------------------
....................................................................................................................................GCTGGGCCTGGGCCGCTGCGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00---1.00---------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................CCCCGAGGGGGCCCGGG....................................................................................................................................................................................................................................................................................................1711.001.00---------------1.00---------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGCTGGGGCTGCGCGGGGCTA............................................................................................2411.001.00--------------1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................TGCGGCGCGGCGCTCCCC..................................................................................................................................................................................................................................................................................................................................181.000.00------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGGCTGCGCGGACGG.............................................................................................191.000.00--------------------------------------------1.00----------------------------------------------------
................................................................................................................................................................ACGGCCCCTTTAAGCCTGAGCCCCGC....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-------------------------------------------------------1.00-----------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................TGGGCGGTGGGGAGCGCCGCG...........................................................................................................................................................................................211.000.00----------------------------------------------------------------1.00--------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGCGTGCTGGGGCTGGCAG..................................................................................................211.000.00----------------------1.00--------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................CGGCAGCAGGGCCGGGGCCGC...............................................................................................................................................................................................................211.000.00-----------------1.00-------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................CTCGCGGGTCCCAGGGGCG.............................................................................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------------1.00--------
..................................................................................................................................................................................................................................................GCGGGTCGTGCGGCGGCG..........................................................................................................................................................................................................................................................................................................................................181.000.00--------------------------------------------------1.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGTATGGTCGGGCTGT............................................................................2011.001.001.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGCTGCGCGGGGCT.............................................................................................1720.500.50----------0.50--------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................TGCCCCGGCGGGTCG....................................................................................................................................................................................................................................................................................................................................................1520.500.50----------------0.50--------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................CGAGGGGGCCCGGGGC..................................................................................................................................................................................................................................................................................................1630.330.33-------------------------------------------------------------------------------------------0.33-----
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGGCTGCGCGGGGC..............................................................................................1770.290.29---------------------------------0.29---------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGGGCTCCGGT..........................................................................................................................................................1540.250.25--------------------------------------------------------------------------------------------0.25----
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGGCTGCGCGGG................................................................................................1670.140.14----------------0.14--------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................CGAGGGGGCCCGGGG...................................................................................................................................................................................................................................................................................................1570.140.14-------------------------------------------------------------------------------------------0.14-----
..............................................................................................................................................................................................................................................................................................................................................................................................TGGGCGGTGGGGAGC.................................................................................................................................................................................................1590.110.11--------------------------------------------------------------------------------------------0.11----

Antisense strand
GGCCTTTTCGAGCGCTCCTAAAGGCGACTCTCCAAGACCCGCTCTCTAAGGTGCTCTTCCCCTTTAAGACTCACGGCTCTTCCCGTCAGGCTGCGTCGCAGTCTTAAGGCCCCGCCTTTTCAGACAGCTTCCGCTGGGCCTGGGCCGCTGCGGGGCGGTCACGGCCCCTTTAAGCCTGAGCCCCGCCCCCTGGCTCCCCGCCCCCTCTTCTCCCCTCCCCCAAGCCAGCACCTGGTGCCCCGGCGGGTCGTGCGGCGCGGCGCTCCGCGGTGAGCGCCTGACCCCGAGGGGGCCCGGGGCCGCGTCCCTGGGCCCTCCCCACCCTTGCGGTGGCCTCGCGGGTCCCAGGGGCGGGGCTGGAGCGGCAGCAGGGCCGGGGAGATGGGCGGTGGGGAGCGCGGGAGGGACCGGGCCGAGCCGGGGGAAGGGCTCCGGTGACTTAAGGGGAGGGAATGCTCCTCTGCCGTGCTCACCGCGTGCTGGGGCTGCGCGGGGCTAGGTATGGTCGGGCTGTTTTCCCACTGTCCCTTCTTCGGGCAGTGTCGCCGTCCAGCCTGGTTGTTGAAGCGTCCCCGTGGTCCCCCGGGGTC
.........................................................................................................................................................................................................................................((.(((((..(((((((.(((.(((.(((...))).)))..))).))))).))..))))))).......................................................................................................................................................................................................................................................................................................
.....................................................................................................................................................................................................................................230..............................................................295.....................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR040028(GSM532913)
G026N. (cervix)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040031(GSM532916)
G013T. (cervix)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM532884(GSM532884)
G871T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040035(GSM532920)
G001T. (cervix)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR040007(GSM532892)
G601T. (cervix)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532890(GSM532890)
G576T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR189786SRR191619(GSM715729)
166genomic small RNA (size selected RNA from . (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
GSM379268(GSM379268)
Small RNA from serous ovarian cancer tissue. (ovary)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR040020(GSM532905)
G699N_2. (cervix)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM532888(GSM532888)
G761T. (cervix)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
...................................................................................CGTCAGGCTGCGTCGCAGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 204.000.00-----4.00-------------------------------------------------------------------------------------------
.............................AGAGAGCGGGTCTTGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1814.004.00--1.00---1.00--------------------1.00--------------------1.00------------------------------------------------
............................................................................................GCCTTAAGACTGCGACGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1812.002.00-----------2.00-------------------------------------------------------------------------------------
.....................................................AGTCTTAAAGGGGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1812.002.00---------1.00--------------------------------------------------------------------1.00------------------
....................GGTCTTGGAGAGTCGCCTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1912.002.00-----------------------2.00-------------------------------------------------------------------------
................................................................................................................................................................................................GCTCCCCGCCCCCTCGGT............................................................................................................................................................................................................................................................................................................................................................................................ 182.000.00--------------------------1.00-------------------------------------------------------1.00--------------
..............................................................................................................GGAAGCTGTCTGAAAAGGCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2212.002.00-------------2.00-----------------------------------------------------------------------------------
.......................CGGGTCTTGGAGAGTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1812.002.00----------------------------------------1.00-------------------------------1.00------------------------
.............................................................................................................CCCCGCCTTTTCAGAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 182.000.00---------------------2.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGCTCACCGCGTAAG............................................................................................................. 181.000.00----------------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................................................TCCCCTCCCCCAAGCTTTG......................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------1.00-------------------------------------------------------------------------------
...........................................................................CGCAGCCTGACGGGAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2011.001.00--------------------------1.00----------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGCCTGGTTGCAG.......................... 181.000.00-------------------------------------1.00-----------------------------------------------------------
...........................................GGGAAGAGCACCTTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1811.001.00---------------------------------------------------------------------1.00---------------------------
...............................................................................................................................................................................................GGCTCCCCGCCCCCTCTTCGGCG........................................................................................................................................................................................................................................................................................................................................................................................ 231.000.00--------------------------------------------------------------------------1.00----------------------
....................................................................................................................................................................................................................................................................................................CCCGGGGCCGCGTCCCTT........................................................................................................................................................................................................................................................................................ 181.000.00---------------------------1.00---------------------------------------------------------------------
................................................................................................................................................................................................GCTCCCCGCCCCCTCTTCGGT......................................................................................................................................................................................................................................................................................................................................................................................... 211.000.00------------------------------------------------------------------------------------1.00------------
.........................................................................................................................................................................................................................................................................................................................................................................GCGGCAGCAGGGCCGGGGCGG................................................................................................................................................................................................................ 211.000.00-------1.00-----------------------------------------------------------------------------------------
...........................................................................GCAGCCTGACGGGAAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1911.001.00------------------------------1.00------------------------------------------------------------------
...............................TTAGAGAGCGGGTCTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1811.001.00-----------------------------------1.00-------------------------------------------------------------
...........................GAGAGCGGGTCTTGGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1911.001.00------1.00------------------------------------------------------------------------------------------
...............TGGAGAGTCGCCTTTAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1911.001.00------------1.00------------------------------------------------------------------------------------
...........................................AAGGGGAAGAGCACCTTAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 2111.001.00-------------------------------------------------------------------1.00-----------------------------
............................................................................................................................................................................................................................................................CGGCGCGGCGCTCCGTGG................................................................................................................................................................................................................................................................................................................................ 181.000.00----------------------------------------------------------------------1.00--------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACGCGGTGAGCACGG............................................................................................................. 1811.001.00---1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................GCGCGGGAGGGACCGAGCG................................................................................................................................................................................ 191.000.00-----------------------------------------------------------------1.00-------------------------------
............................................................................................................................................................................................................................................GCACGACCCGCCGGGGC................................................................................................................................................................................................................................................................................................................................................. 1711.001.00---------------1.00---------------------------------------------------------------------------------
..................................CACCTTAGAGAGCGGGTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1911.001.00-------------------------------------------------------------------------1.00-----------------------
..............................CTTAGAGAGCGGGTCTTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 2011.001.00----------------------------------------------------1.00--------------------------------------------
..............GAGAGTCGCCTTTAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1811.001.00--1.00----------------------------------------------------------------------------------------------
.............................GAGAGCGGGTCTTGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1711.001.00---------------------------------------------------------------------------------------1.00---------
...........................GAGCGGGTCTTGGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1711.001.00------------------------------------------------------------------1.00------------------------------
.........................................................................GCCTGACGGGAAGAGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00-------------------------------------------------------------------------------------1.00-----------
..............AGAGTCGCCTTTAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1711.001.00---------------------------------------------------------1.00---------------------------------------
........................................GGGGAAGAGCACCTTAGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 2211.001.00---------------------------------------------------------------------------1.00---------------------
...............................................................TTAAGACTCACGGCTCTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-----------------------------------------------------------1.00-------------------------------------
........................................TAAAGGGGAAGAGCACCTTAGAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 2611.001.00-------------1.00-----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCGGGCTGTTTTC........................................................................ 171.000.00---------------1.00---------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................GTCCCAGGGGCGGGGGG........................................................................................................................................................................................................................................ 171.000.00----------------1.00--------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGCTGGACGGCGAC............................... 1811.001.00---------------------------------------------------------------------------------1.00---------------
.AGGAGCGCTCGAAAAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00-----------------------------------------------1.00-------------------------------------------------
................................CAAGACCCGCTCTCTAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.001.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGAGCCCCGCCCCCTAATT........................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------------------1.00-----------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGGGGGACCACGGGGACGCTTCA... 2511.001.00-----------------------------1.00-------------------------------------------------------------------
............................GAGAGCGGGTCTTGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1811.001.00--------------------------------------------------------------------------------1.00----------------
........................................................................................................................................................................................................................................................CGTGCGGCGCGGCGCGCCC................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------------------------------1.00-------------------------
......................................AAGAGCACCTTAGAGAGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2011.001.00------1.00------------------------------------------------------------------------------------------
...........................AGCACCTTAGAGAGCGGGTCTTGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2811.001.00--------1.00----------------------------------------------------------------------------------------
..........................GAGAGCGGGTCTTGGAGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 2011.001.00----------------------------1.00--------------------------------------------------------------------
....................................................GAGTCTTAAAGGGGAAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2011.001.00------------------------------1.00------------------------------------------------------------------
..............CTTGGAGAGTCGCCTTTAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 2211.001.00----------------------------------------------1.00--------------------------------------------------
..................................................................................................................GCGGAAGCTGTCTGAAAAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 2011.001.00---1.00---------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCGTGGTCCCCCTCC... 181.000.00-------------------------1.00-----------------------------------------------------------------------
.........................................................................GACGCAGCCTGACGGGAAGAGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 2411.001.00-------------------------------1.00-----------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................GGGCCCGGGGCCGCGGAGG.......................................................................................................................................................................................................................................................................................... 191.000.00-------1.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................GGGCCCAGGGACGCGGC................................................................................................................................................................................................................................................................................... 1730.670.67-----------------------------------------------------------------------------------------0.67-------
...........................................................................................................................................................................................................................................................................................................GGGCCCAGGGACGCGG................................................................................................................................................................................................................................................................................... 1630.670.67--------------------------------0.33--------------------------------------------------------------0.33-
.....................................................GTCTTAAAGGGGAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1720.500.50------------------------------------------------------------------------------------------0.50------
................................AGAGAGCGGGTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1560.330.33---------------------------------------------------------------------------------------------0.33---
.......................................................................................................................................................................................................AGGGGAGAAGAGGGGGC...................................................................................................................................................................................................................................................................................................................................................................................... 1730.330.33----------------------------------------------------------------------------------------------0.33--
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGACCACGGGGAC....... 1540.250.25------------------------------------------------------------------------------------------------0.25