ID: uc009wde.2_intron_5_0_chr1_92181952_r
GENE: (14)
chr1:92181902-92182174-


(1)
AGO2.ip 		(4)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(17)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(8)
LIVER 		(2)
OTHER 		(26)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
ATATGGATGAAGGAGATGCTTCCCTGTTCACCCGACCTGAAATCGTGGTGGTATGTGTTTGTTATCAGTAGGGGGTTTGTGGAAAATGCTGTCTATTTTGTTGGCTTTAGTTAGGGACTATCTGAAAATAAAATCAGATGTTAAAAGCCAAAGCTCATGAAGCTACAGGGCCTTCATCCTTCATATGACTGTCATTAATCTTCCTGTGGGTTGTTATTTCCAGTTTAATTGCAGCCTTCAGCAGGTGAGGAACCCCAGCAGCTTCCAGGAACA
............................................................((((.(((((((.(((...........))).)))))..)).))))........................................................................................................................................................................
..................................................51..............................................................115............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029129(GSM416758)
SW480. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
............................................................................................CTATTTTGTTGGCTTTCGG..................................................................................................................................................................199.000.003.001.00------1.00-------1.00----------------1.00------------------1.00----1.00-----------
.......................................................................GGGGTTTGTGGAAAAAAA........................................................................................................................................................................................188.000.00------3.00-------------1.00-------1.00-------1.00-------------1.001.00-----------------
...........................................................................................TCTATTTTGTTGGCTTTCGGA.................................................................................................................................................................218.000.003.005.00-------------------------------------------------------------------
............................................................................................CTATTTTGTTGGCTTTCGGA.................................................................................................................................................................207.000.003.001.00---1.00------1.00--------------------------1.00-----------------------------
..ATGGATGAAGGAGATGCTTCCC.........................................................................................................................................................................................................................................................2215.005.00---5.00-----------------------------------------------------------------
.......................................................................GGGGTTTGTGGAAAAAAAA.......................................................................................................................................................................................195.000.00-------------------------1.00-----1.00--1.00--1.00-----1.00-------------------------
.................................GACCTGAAATCGTGGTG...............................................................................................................................................................................................................................1715.005.00--5.00------------------------------------------------------------------
.............................................................................................TATTTTGTTGGCTTTCGGA.................................................................................................................................................................195.000.00----------1.001.001.00----------------1.00--------1.00------------------------------
.............................................................................................TATTTTGTTGGCTTTCGG..................................................................................................................................................................183.000.00-----------1.00---------------1.00----1.00------------------------------------
...........................................................................................TCTATTTTGTTGGCTTTCGG..................................................................................................................................................................203.000.00----------------1.00---------------------------1.00---------1.00--------------
.........AAGGAGATGCTTCCCTGTTCACCCGACCTGAAATCG....................................................................................................................................................................................................................................3612.002.00----------------------1.00--------------------------------1.00-------------
.............................................................................................TATTTTGTTGGCTTTCG...................................................................................................................................................................172.000.00---------------------1.00--1.00--------------------------------------------
..................................................GTATGTGTTTGTTATCAGTAGGGGG......................................................................................................................................................................................................2512.002.00--------------2.00------------------------------------------------------
.................................................................................................................GGGACTATCTGAAAATACC.............................................................................................................................................191.000.00---------------------------------------------1.00-----------------------
...........................................................................................TCTATTTTGTTGGCTTTCGCA.................................................................................................................................................................211.000.00-1.00-------------------------------------------------------------------
.....GATGAAGGAGATGCTGTGT.........................................................................................................................................................................................................................................................191.000.00-----------------------------------------1.00---------------------------
..............................................................................................................TTAGGGACTATCTGAAAATAAAA............................................................................................................................................2311.001.00-----------------------------------------------1.00---------------------
..ATGGATGAAGGAGATGCT.............................................................................................................................................................................................................................................................1811.001.00------------------------------------------------1.00--------------------
............................................................................................CTATTTTGTTGGCTTTCG...................................................................................................................................................................181.000.00------------------------------------------1.00--------------------------
............................................................................................................................................................................................................................................TTCAGCAGGTGAGGAACCCCAGCAGCCTCC.......301.000.00-------------1.00-------------------------------------------------------
............................................................................................CTATTTTGTTGGCTTTC....................................................................................................................................................................171.000.00----1.00----------------------------------------------------------------
...........................................................................................TCTATTTTGTTGGCTTTCAGA.................................................................................................................................................................211.000.00---------------1.00-----------------------------------------------------
.............................ACCCGACCTGAAATCAAA..................................................................................................................................................................................................................................181.000.00------------------1.00--------------------------------------------------
.......................................................................................................................................................................................................................................................AGGAACCCCAGCAGCTTCCAG.....2111.001.00-------------1.00-------------------------------------------------------
.....................................................................................................................................................................................................ATCTTCCTGTGGGTTGTTATTTCC....................................................2411.001.00----------------------------------------1.00----------------------------
.....................................TGAAATCGTGGTGGTATGTGTTTGT...................................................................................................................................................................................................................2511.001.00-------------------------------------------------1.00-------------------
...........................................................................................TCTATTTTGTTGGCTTTC....................................................................................................................................................................181.000.00----------1.00----------------------------------------------------------
..................................ACCTGAAATCGTGGT................................................................................................................................................................................................................................1511.001.00--------------------------------------------------------1.00------------
................TGCTTCCCTGTTCACCCGACCCG..........................................................................................................................................................................................................................................231.000.00------------------------------1.00--------------------------------------
...........................................................................................TCTATTTTGTTGGCTCGG....................................................................................................................................................................181.000.00--------------------------1.00------------------------------------------
............................................................................................CTATTTTGTTGGCTTTCTGA.................................................................................................................................................................201.000.00-----1.00---------------------------------------------------------------
.................................GACCTGAAATCGTGGTT...............................................................................................................................................................................................................................171.000.00--1.00------------------------------------------------------------------
...........................................................................................TCTATTTTGTTGGCTCG.....................................................................................................................................................................171.000.00--------1.00------------------------------------------------------------
................................................................................................................AGGGACTATCTGAAAGCGG..............................................................................................................................................191.000.00----------------------------------------------1.00----------------------
.....................................................................................................TGGCTTTAGTTAGGGACTATC.......................................................................................................................................................2111.001.00-----------------------1.00---------------------------------------------
...TGGATGAAGGAGATGCCGAC..........................................................................................................................................................................................................................................................201.000.00-----1.00---------------------------------------------------------------
..ATGGATGAAGGAGATTCA.............................................................................................................................................................................................................................................................1830.670.33-----------------0.330.33--------------------------------------------------
..ATGGATGAAGGAGATTCCC............................................................................................................................................................................................................................................................1930.330.33-----------------0.33---------------------------------------------------
..ATGGATGAAGGAGAT................................................................................................................................................................................................................................................................1530.330.33------------------------------------------------------------------0.33--
..ATGGATGAAGGAGATTCAC............................................................................................................................................................................................................................................................1930.330.33-----0.33---------------------------------------------------------------
...TGGATGAAGGAGATGCT.............................................................................................................................................................................................................................................................1730.330.33----0.33----------------------------------------------------------------
..ATGGATGAAGGAGATTCAG............................................................................................................................................................................................................................................................1930.330.33-----------------0.33---------------------------------------------------
...............................................................................................................................................................................................................................................................CAGCAGCTTCCAGGAAC.1760.170.17--------------------------------------------------------------------0.17

Antisense strand
ATATGGATGAAGGAGATGCTTCCCTGTTCACCCGACCTGAAATCGTGGTGGTATGTGTTTGTTATCAGTAGGGGGTTTGTGGAAAATGCTGTCTATTTTGTTGGCTTTAGTTAGGGACTATCTGAAAATAAAATCAGATGTTAAAAGCCAAAGCTCATGAAGCTACAGGGCCTTCATCCTTCATATGACTGTCATTAATCTTCCTGTGGGTTGTTATTTCCAGTTTAATTGCAGCCTTCAGCAGGTGAGGAACCCCAGCAGCTTCCAGGAACA
............................................................((((.(((((((.(((...........))).)))))..)).))))........................................................................................................................................................................
..................................................51..............................................................115............................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR029129(GSM416758)
SW480. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR191610(GSM715720)
195genomic small RNA (size selected RNA from . (breast)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR038859(GSM458542)
MM386. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR038863(GSM458546)
MM603. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................................................GGCCTTCATCCTTCAATC....................................................................................... 183.000.00-------3.00-------------------------------------------------------------
..................CTTCCCTGTTCACCCAGC............................................................................................................................................................................................................................................. 183.000.00----2.00----------1.00-----------------------------------------------------
..................CTTCCCTGTTCACCCGAG............................................................................................................................................................................................................................................. 182.000.00-----------------0.50-1.00------------------------------------------0.50------
..............................................................................................................................................................................................................................................................CCAGCAGCTTCCAGGAAC. 181.000.00-----------------------------------1.00---------------------------------
..................CTTCCCTGTTCACCCGAGC............................................................................................................................................................................................................................................ 191.000.00------------------------------------------------------------0.50----0.50---
..................................................................................................................GGACTATCTGAAAATTCTT............................................................................................................................................ 191.000.00---------1.00-----------------------------------------------------------
............................................................................................................................AAAATAAAATCAGATGTTAAA................................................................................................................................ 211.000.00----------------------------------------------------------1.00----------
..................CTTCCCTGTTCACCCGAGCC........................................................................................................................................................................................................................................... 201.000.00-----------------------------------------------------------0.50----0.50----
.................................................................ACAAACCCCCTACTG................................................................................................................................................................................................. 1540.500.50---------------------------------------------------------------0.50-----
..................CGGGTGAACAGGGAAG............................................................................................................................................................................................................................................... 1620.500.50-------------------------------------------------------------0.50-------
..........................................................................................................................................................................................................ATAACAACCCACAGG........................................................ 1560.170.17-------------------------------------------------------------------0.17-