ID: uc009vlf.1_intron_2_0_chr1_2489908_f.3p
GENE: TNFRSF14(3)
chr1:2491062-2491311+


(3)
B-CELL 		(1)
BRAIN 		(13)
BREAST 		(18)
CELL-LINE 		(5)
CERVIX 		(3)
HEART 		(6)
LIVER 		(2)
OTHER 		(25)
SKIN 		(1)
XRN.ip

Sense strand
CAGCTCTGCCGTCCCTTGGTGTCCCTCCCGGCCTCAGGTCCTCCATGCTGGGTACCTCTGGGCACCTCGTTTGGCTGAGCCAGGGGTTCAGCCTGGCAGGGCGCCCTGGCAGCAGTCCTTGGCCTGTGGATGCTGTCCTGGCCCGTGGATGGTGTCCCGGCCTCCACGTACCCCTCTCAGCCCCTCCTCTTGGACTCCAGCCATGGGCCTGCGCGCGAGCCGGAACTGCTCCAGGACAGAGAACGCCGTG
............................................................................................(((.((((....)))).)))........((((...(((((((((((........))))))))))).))))........................................................................................
...........................................................................................92.....................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR037931(GSM510469)
293GFP. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR191501(GSM715611)
8genomic small RNA (size selected RNA from to. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................CAGGGCGCCCTGGCATGGG.......................................................................................................................................1919.000.004.003.004.00--2.002.00---------------1.00------------1.00---------------1.00--1.00-----------------------
............................................................................................................................................GCCCGTGGATGGTGTGAGG...........................................................................................1927.500.50------0.50-1.00----------0.50------------------------------0.50--------0.500.50--0.500.50--0.50---0.500.500.500.500.50--
..................................................................................................................................................................................................................GCGCGCGAGCCGGAA.........................1525.005.00-------------2.00--2.00-------------------1.00-----------------------------------------
................................................................................................CAGGGCGCCCTGGCATCGG.......................................................................................................................................193.000.001.001.00----------1.00-----------------------------------------------------------------
..............................................................................................GGCAGGGCGCCCTGGCA...........................................................................................................................................1713.003.00-----------2.00------------1.00-----------------------------------------------------
............................................................................................................................................GCCCGTGGATGGTGTGAG............................................................................................1822.500.50-------------------------------------------------------------0.50---0.500.50-0.500.50--------
...............................................................................................GCAGGGCGCCCTGGCATG.........................................................................................................................................182.000.00----------1.00-1.00-----------------------------------------------------------------
..............................................................................................GGCAGGGCGCCCTGGCAT..........................................................................................................................................1812.003.00-------------------------------1.00-----1.00----------------------------------------
......................................................................................................................................................................................................AGCCATGGGCCTGCGCGCGAGCCGGAAC........................2812.002.00---2.00--------------------------------------------------------------------------
................................................................................................CAGGGCGCCCTGGCATGGC.......................................................................................................................................192.000.001.001.00----------------------------------------------------------------------------
..............................................................................................GGCAGGGCGCCCTGGTTT..........................................................................................................................................181.000.00--------1.00---------------------------------------------------------------------
..............................................................................................GGCAGGGCGCCCTGGCCTGG........................................................................................................................................201.000.00--1.00---------------------------------------------------------------------------
......................................................................................................................................................................................................................................CCAGGACAGAGAACGCC...1711.001.00------------------------------------------------1.00-----------------------------
..............................................................................................GGCAGGGCGCCCTGGCATGGG.......................................................................................................................................2111.003.00-----1.00------------------------------------------------------------------------
..........................CCCGGCCTCAGGTCCTACTT............................................................................................................................................................................................................201.000.00----------------------------------------------------1.00-------------------------
...........................................................................................................................................................................CCCTCTCAGCCCCTCGCCG............................................................191.000.00---------------------------------------1.00--------------------------------------
.......................................................................................................................................................................................CTCCTCTTGGACTCCAGCCATG.............................................2211.001.00---------------------------------1.00--------------------------------------------
................................................................................................................................................................................................................CTGCGCGCGAGCCGGGCC........................181.000.00-------------------------------------------1.00----------------------------------
................................................................................................................................................................................................................CTGCGCGCGAGCCGGGCCC.......................191.000.00-------------------------------------------------1.00----------------------------
....................................................................................................................CCTTGGCCTGTGGATGCTGTCCTGGC............................................................................................................2611.001.00--------------1.00---------------------------------------------------------------
...........................................................................................................................CTGTGGATGCTGTCCTGGAC...........................................................................................................201.000.00-----------------------------1.00------------------------------------------------
.......................................................................................................................................................................................................................CGAGCCGGAACTGCTCCAGG...............2011.001.00-----------------1.00------------------------------------------------------------
....................................................................................................................................................................................................................................CTCCAGGACAGAGAACGCC...1911.001.00-------1.00----------------------------------------------------------------------
.............................................................................................................................................................................................................................GGAACTGCTCCAGGACAGAGAACGCCG..2711.001.00------------------1.00-----------------------------------------------------------
................................................................................................................................................GTGGATGGTGTCCCGGCC........................................................................................1811.001.00----1.00-------------------------------------------------------------------------
....................................................................................................................................................................................................................................CTCCAGGACAGAGAACGC....1811.001.00-------1.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................................TCCAGGACAGAGAACGCC...1811.001.00-------------------------------------------------------1.00----------------------
...............................................................................................................GCAGTCCTTGGCCTGACAC........................................................................................................................191.000.00------------------------------------------1.00-----------------------------------
........................................................TCTGGGCACCTCGTTTGGCTG.............................................................................................................................................................................2111.001.00----1.00-------------------------------------------------------------------------
............................................................................................................................................................................................................GGGCCTGCGCGCGAGCCGGAAC........................2211.001.00--------------------------1.00---------------------------------------------------
...............................................................................................GCAGGGCGCCCTGGCAT..........................................................................................................................................171.000.00----------------------------1.00-------------------------------------------------
..........................................................................................................................................................................................................ATGGGCCTGCGCGCGAGCCAATT.........................231.000.00------------------------------1.00-----------------------------------------------
..............................................................................................................................................................................................................GCCTGCGCGCGAGCCATC..........................181.000.00-----------------------------------------------------1.00------------------------
................................................................................................CAGGGCGCCCTGGCATGG........................................................................................................................................181.000.00--------------------------------------------------------1.00---------------------
..........................................................TGGGCACCTCGTTTGGCTGAG...........................................................................................................................................................................2111.001.00---------1.00--------------------------------------------------------------------
..........................................................................................................................................................................................................................GCCGGAACTGCTCCAGGACAGAGAA.......2511.001.00-----------------1.00------------------------------------------------------------
...........................................................GGGCACCTCGTTTGGCTGAGC..........................................................................................................................................................................2111.001.00---------1.00--------------------------------------------------------------------
.............................................................................AGCCAGGGGTTCAGCGGTC..........................................................................................................................................................191.000.00--------------------------------------1.00---------------------------------------
............CCCTTGGTGTCCCTCCCGGC..........................................................................................................................................................................................................................2011.001.00-------------------------1.00----------------------------------------------------
.........................................................................................................CTGGCAGCAGTCCTTGGCCTGTGGAT.......................................................................................................................2611.001.00--------------1.00---------------------------------------------------------------
................................................................................................CAGGGCGCCCTGGCATG.........................................................................................................................................171.000.00--------------------------------1.00---------------------------------------------
..........................CCCGGCCTCAGGTCCTCCCAG...........................................................................................................................................................................................................211.000.00---1.00--------------------------------------------------------------------------
........................................................TCTGGGCACCTCGTTTGGCTGAGC..........................................................................................................................................................................2411.001.00---------------------1.00--------------------------------------------------------
......................................................................................................................................................................................................AGCCATGGGCCTGCGCGCGAGC..............................2211.001.00----1.00-------------------------------------------------------------------------
..............................................................................................GGCAGGGCGCCCTGGCATGG........................................................................................................................................2011.003.00----------------------------------1.00-------------------------------------------
............................................................................................................................................GCCCGTGGATGGTGT...............................................................................................1520.500.50----------------------------------------------------------------------0.50-------
............................................................................................................................................GCCCGTGGATGGTGTGTGG...........................................................................................1920.500.50--------------------------------------------------0.50---------------------------
............................................................................................................................................GCCCGTGGATGGTGTGAA............................................................................................1820.500.50--------------------------------------------------------------0.50---------------
........................................................................................................................................................................................................................GAGCCGGAACTGCTCCAG................1820.500.50----------------------------------------------------------0.50-------------------
...............................................................................................GCAGGGCGCCCTGGC............................................................................................................................................1550.200.20----------------------------------------------------------------------------0.20-
.......................................................................................................................................................................................................................................CAGGACAGAGAACGC....1550.200.20--------------------0.20---------------------------------------------------------

Antisense strand
CAGCTCTGCCGTCCCTTGGTGTCCCTCCCGGCCTCAGGTCCTCCATGCTGGGTACCTCTGGGCACCTCGTTTGGCTGAGCCAGGGGTTCAGCCTGGCAGGGCGCCCTGGCAGCAGTCCTTGGCCTGTGGATGCTGTCCTGGCCCGTGGATGGTGTCCCGGCCTCCACGTACCCCTCTCAGCCCCTCCTCTTGGACTCCAGCCATGGGCCTGCGCGCGAGCCGGAACTGCTCCAGGACAGAGAACGCCGTG
............................................................................................(((.((((....)))).)))........((((...(((((((((((........))))))))))).))))........................................................................................
...........................................................................................92.....................................................................163.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR037931(GSM510469)
293GFP. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		GSM532880(GSM532880)
G659T. (cervix)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189784SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR191588(GSM715698)
52genomic small RNA (size selected RNA from t. (breast)		SRR191501(GSM715611)
8genomic small RNA (size selected RNA from to. (breast)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577739(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		TAX577588(Rovira)
total RNA. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................CCCCTCTCAGCCCCTCCG.............................................................. 181.000.00----------------------------------------------1.00-------------------------------
................................................................................CAGGGGTTCAGCCTGGCCCG...................................................................................................................................................... 201.000.00-----------------------1.00------------------------------------------------------
...............................................................................................................................................................................CTCAGCCCCTCCTCTTGT......................................................... 181.000.00---------------------------------------------1.00--------------------------------
......................................................................................................GCCCTGGCAGCAGTCCTTCC................................................................................................................................ 201.000.00---------------1.00--------------------------------------------------------------
..................................................................................................................................................................................................................GCGCGCGAGCCGGAACCCCT.................... 201.000.00----------1.00-------------------------------------------------------------------
...............................................................................................................................................................AAGAGGAGGGGCTGAGAGGGGTACGTGGAGGC........................................................... 3211.001.00--------------------1.00---------------------------------------------------------
..........................................................................................................................................................................CCCCTCTCAGCCCCTACC.............................................................. 181.000.00-----------------------------------------------1.00------------------------------
.............................................................................................................................................................................................TTGGACTCCAGCCATCGTC.......................................... 191.000.00---------------------------------------------------------1.00--------------------
...................................................................................................................................GCTGTCCTGGCCCGTG....................................................................................................... 161.000.00---------------1.00--------------------------------------------------------------
...................................................................................................................................................................GGAGGGGCTGAGAGGGGTACGTGG............................................................... 2411.001.00-------------------1.00----------------------------------------------------------
..........................................................................................................................................................................CCCCTCTCAGCCCCTGGGG............................................................. 191.000.00-----------------------------------------1.00------------------------------------
.........................................................................................................AGGCCAAGGACTGCTGCCAG............................................................................................................................. 2011.001.00------------------1.00-----------------------------------------------------------
....................................................................................................AGGACTGCTGCCAGGGCGC................................................................................................................................... 1911.001.00----------------------------------------1.00-------------------------------------
..............................................................................................................................................................................TCTCAGCCCCTCCTCTTTT......................................................... 191.000.00---------------------------1.00--------------------------------------------------
...................................................................................................................................GCTGTCCTGGCCCGTGGG..................................................................................................... 181.000.00--------------------------------------------1.00---------------------------------
....................................................................................................................................................AGGCCGGGACACCAT....................................................................................... 1540.250.25----------------------------------------------------------0.25-------------------
...................................................................................................................GCATCCACAGGCCAAGGA..................................................................................................................... 1850.200.20-----------------------------------------------------------------------------0.20