| (1) AGO2.ip | (2) B-CELL | (1) BREAST | (14) CELL-LINE | (1) HEART | (5) HELA | (1) LIVER | (3) SKIN |
| CCTGGCACCCAGGGTGGGAAGGCTTCCCGGAAGGTGTTGAGCCAGAGGGTCATCTGGGAACACAAGGCACGGGAGGTGGCCACGGGGGCGAGGAGGTTCTGGCCTCTACTCCCCTGGGAGGGCGTCTGAATGATGCAGCTCTGATCCTCACTCCCCGAAGAGGGGTTCAAGGGGGTAACGCAGCTCCGGGCTCCCAGCAGAGGCTGGAACCGCATCATCGTGGAGAAGCCCTTCGGGAGGGACCTGCAGA .......................................................((((......(((((.....))).)).((((((...((((((....))))))...)))))).(((.(((((.....)))))..)))...))))...................................................................................................... ..................................................51.................................................................................................150.................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR207116(GSM721078) Nuclear RNA. (cell line) | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR039616(GSM531979) HBV(+) Distal Tissue Sample 1. (liver) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR033717(GSM497062) Mentle Cell Lymphoma (MCL112). (B cell) | SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR029127(GSM416756) A549. (cell line) | SRR038861(GSM458544) MM466. (cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................CTGAATGATGCAGCTCTGATC........................................................................................................ | 21 | 1 | 31.00 | 31.00 | - | 8.00 | 8.00 | 3.00 | 5.00 | - | 1.00 | - | 2.00 | 2.00 | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................TGAATGATGCAGCTCTGATCCTCACTCCCCGAAGAGGGGTTCAAGGGGGTAACGCAGCTCCGGGCTCCCAGCAG.................................................. | 74 | 1 | 11.00 | 11.00 | 11.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................GAATGATGCAGCTCTGATCCTCACTCCCCGAAGAGGGGTTCAAGGGGGTAACGCAGCTCCGGGCTCCCAGCAG.................................................. | 73 | 1 | 10.00 | 10.00 | 10.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................ATGCAGCTCTGATCCTCACTCCCCGAAGAGGGGTTCAAGGGGGTAACGCAGCTCCGGGCTCCCAGCAG.................................................. | 68 | 1 | 6.00 | 6.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TGATGCAGCTCTGATCCTCACTCCCCGAAGAGGGGTTCAAGGGGGTAACGCAGCTCCGGGCTCCCAGCAG.................................................. | 70 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................GCATCATCGTGGAGAAGCCCTTCGGGAGGGACCTG.... | 35 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................CGGGAGGGACCTGCAGA | 17 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TGAATGATGCAGCTCTGATC........................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................AGAGGGTCATCTGGGAACACAAGGCACGGGAGGTGGCCACGGGGGCGAGGAGGTTCTGGCCTCTACTCCCCTGGGAGGGCGTCA........................................................................................................................... | 84 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ...............................................................................CCACGGGGGCGAGGAGGTTC....................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................TCCGGGCTCCCAGCAA.................................................. | 16 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...............................................................AAGGCACGGGAGGTGTG.......................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................TCTGAATGATGCAGCTCTGATC........................................................................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................GCATCATCGTGGAGAAGCC.................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................CTGAATGATGCAGCTCTGATCCTC..................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................ATGATGCAGCTCTGACGCA...................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................GAAGGCTTCCCGGAAGGCT...................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................CTGAATGATGCAGCTCTGAAGA....................................................................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................CATCGTGGAGAAGCCCTTCGGGAGGGACCTG.... | 31 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................TGGGAACACAAGGCAGCCG................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................GGGAGGGCGTCTGAA........................................................................................................................ | 15 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................TCTGAATGATGCAGCTCTG........................................................................................................... | 19 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - |
| ......................................................................................................................................................................................................AGAGGCTGGAACCGCA.................................... | 16 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................CGGGAGGGACCTGCAG. | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................GCATCATCGTGGAGA........................ | 15 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................TGGGAGGGCGTCTGACGCC..................................................................................................................... | 19 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................TGGGAGGGCGTCTGA......................................................................................................................... | 15 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - |
| ..................................................................................................................TGGGAGGGCGTCTGATT....................................................................................................................... | 17 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - |
| CCTGGCACCCAGGGTGGGAAGGCTTCCCGGAAGGTGTTGAGCCAGAGGGTCATCTGGGAACACAAGGCACGGGAGGTGGCCACGGGGGCGAGGAGGTTCTGGCCTCTACTCCCCTGGGAGGGCGTCTGAATGATGCAGCTCTGATCCTCACTCCCCGAAGAGGGGTTCAAGGGGGTAACGCAGCTCCGGGCTCCCAGCAGAGGCTGGAACCGCATCATCGTGGAGAAGCCCTTCGGGAGGGACCTGCAGA .......................................................((((......(((((.....))).)).((((((...((((((....))))))...)))))).(((.(((((.....)))))..)))...))))...................................................................................................... ..................................................51.................................................................................................150.................................................................................................. | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR037944(GSM510482) 293DcrTN_cand5. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR207116(GSM721078) Nuclear RNA. (cell line) | RoviraIPAgo2(Rovira) total RNA. (ago2 breast) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR039616(GSM531979) HBV(+) Distal Tissue Sample 1. (liver) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | SRR033717(GSM497062) Mentle Cell Lymphoma (MCL112). (B cell) | SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR029127(GSM416756) A549. (cell line) | SRR038861(GSM458544) MM466. (cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line) | SRR326281(GSM769511) "Dicer mRNA was knocked down using siDicer, c. (cell line) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................GTTCTGGCCTCTACTTCTG........................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................CTCCCGTGCCTTGTGT............................................................................................................................................................................... | 16 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................................................................................................................................CAGCTCCGGGCTCCCGGG.................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................CTGGCCTCTACTCCCCTCAAG................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................AGGGGAGTAGAGGCC....................................................................................................................................... | 15 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 |