ID: uc004dmb.3_intron_0_0_chrX_48888113_r.3p
GENE: TFE3(9)
chrX:48888063-48888312-


(5)
BRAIN 		(4)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(4)
LIVER 		(2)
OTHER 		(11)
SKIN

Sense strand
CCATTATTATATACCCACTTTACAGTTTGCGACTCTGAAGCTTCAGAGATGTTAAGCACCTTGCCTAAAGTTTTGGAACTAGTGAGTAGCAGAAGCTGAATTCCAACCCAGGGAACCTACCCTTTTCAACCTTTATACTCCTCTGCCTCTGAGGGACTCTGAACCCTACTTATCCTGCACCCAACCCCTATTTTTTACAGGAACTAGAACTGCAGGCCCAGATCCATGGCCTGCCAGTACCTCCCACTCC
................................................................................................................................................((.....((((........)))).........))........................................................................
................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189785
.....................................................................................................................................................TGAGGGACTCTGAACTCTG..................................................................................1961.000.0046.00-4.003.00-2.00---------1.001.00--------1.00--1.00-----1.00---1.00---
....................................................................................................................................................................................................ACAGGAACTAGAACTCTG....................................184.000.00--1.001.00---2.00----------------------------------
......................................................................................................................................................................................................AGGAACTAGAACTGCAGGCCCAGATC..........................2614.004.00----3.00-1.00-----------------------------------
............................................................................................................................................................................................................TAGAACTGCAGGCCCAGAT...........................1913.003.00-3.00----------------------------------------
.........................................................................................................................................................................................................AACTAGAACTGCAGGCCCAG.............................2013.003.00---1.00-----------------------1.00---------1.00----
......................................................................................................................................................................................................AGGAACTAGAACTGCAGGCCCAGATCC.........................2713.003.00-1.00------1.00---------------1.00-----------------
.......................................................................................................................................................................................................GGAACTAGAACTGCAGGCCCAGA............................2313.003.00-2.00---------------------1.00------------------
....................................................................................................................................................CTGAGGGACTCTGAACTCTG..................................................................................202.000.002.00-----------------------------------------
......................................................................................................................................................................................................AGGAACTAGAACTGCAGGCC................................2012.002.00--1.00--------------------------1.00------------
.....................................................................................................................................................TGAGGGACTCTGAACTCGG..................................................................................192.000.00------------2.00-----------------------------
........................................................................................................................................................................................................GAACTAGAACTGCAGGCCCAG.............................2112.002.00-----------2.00------------------------------
.......................................................................................................................................................................................ACCCCTATTTTTTACTAG.................................................181.000.00-----------------1.00------------------------
............................................................................................................................................................................................................TAGAACTGCAGGCCCAGATC..........................2011.001.00---------------1.00--------------------------
.......................................................................................................................................................................................................GGAACTAGAACTGCAGGC.................................1811.001.001.00-----------------------------------------
..........................................................................................AGAAGCTGAATTCCAACCCAGG..........................................................................................................................................2211.001.00-----1.00------------------------------------
...................................................TTAAGCACCTTGCCTGCGG....................................................................................................................................................................................191.000.00--------------------------1.00---------------
..........................................................................................................................................................................................................ACTAGAACTGCAGGCCCAGA............................2011.001.00------------------1.00-----------------------
.........................................................................................................................................................................................................AACTAGAACTGCAGGCC................................1711.001.00----------1.00-------------------------------
......................................................................................................................................................................................................AGGAACTAGAACTGCAGGC.................................1911.001.00----------------------1.00-------------------
....................................................................................................................................................................................CCAACCCCTATTTTTTACAG..................................................2011.001.00--------------------------------1.00---------
.........................................................................................................................................................................................................AACTAGAACTGCAGGCCCAGA............................2111.001.00----1.00-------------------------------------
...................................................................AAGTTTTGGAACTAGTGAGTAGCAGAAGCTGA.......................................................................................................................................................3211.001.00----------1.00-------------------------------
..........................................................................................................................................................................................................................CAGATCCATGGCCTGCCCG.............191.000.00---------------------------------1.00--------
................................................................................................................................................GCCTCTGAGGGACTCTGAACCCTG..................................................................................241.000.00--------1.00---------------------------------
..............................................................................................................................................CTGCCTCTGAGGGACTCTGAA.......................................................................................2111.001.00---------------------1.00--------------------
........................................................................................................................................................................................................GAACTAGAACTGCAGGCCCAGAT...........................2311.001.00------------------------------1.00-----------
......................................................................................................................................................................................................AGGAACTAGAACTGCAGGCAC...............................2111.001.00-------------1.00----------------------------
........................................................................................................................................................................................................GAACTAGAACTGCAGGCCCAGATCC.........................2511.001.00-----------------------------------1.00------
...........................................................................................................................................................................................................CTAGAACTGCAGGCCCAGATCC.........................2211.001.00------1.00-----------------------------------
.............................................................................................................................................................................................................AGAACTGCAGGCCCAGATCCATGGC....................2511.001.00------1.00-----------------------------------
............................................................................................................................................................................................................................GATCCATGGCCTGCCAGTACCTCCC.....2511.001.00--------------1.00---------------------------
.........................................................................................................................................................................................................AACTAGAACTGCAGGCCC...............................1811.001.00-------1.00----------------------------------
.............................................................................................................................................................................................................AGAACTGCAGGCCCAGATCCA........................2111.001.00--------------1.00---------------------------
..........................................................................................................................................................................................................ACTAGAACTGCAGGCCCAGTTC..........................221.000.00------------------------------------1.00-----
........................................................................................................................................................................................................GAACTAGAACTGCAGGCC................................1811.001.00-1.00----------------------------------------
.....................................................................................................................................................................................................CAGGAACTAGAACTGCAGGCCCAGA............................2511.001.00-----1.00------------------------------------
.....................................................................................................................................................................................................CAGGAACTAGAACTGCAGGCC................................2111.001.00-------------1.00----------------------------
.........................................................................................................................................................................................................AACTAGAACTGCAGGCACG..............................191.000.00-------------------1.00----------------------
..............................................................................................................................................................................................................GAACTGCAGGCCCAGA............................1640.250.25--------0.25---------------------------------
.CATTATTATATACCC..........................................................................................................................................................................................................................................1550.200.20-----------------------------------------0.20
........................................................................................................................................................................................................GAACTAGAACTGCAG...................................1560.170.17----------------0.17-------------------------

Antisense strand
CCATTATTATATACCCACTTTACAGTTTGCGACTCTGAAGCTTCAGAGATGTTAAGCACCTTGCCTAAAGTTTTGGAACTAGTGAGTAGCAGAAGCTGAATTCCAACCCAGGGAACCTACCCTTTTCAACCTTTATACTCCTCTGCCTCTGAGGGACTCTGAACCCTACTTATCCTGCACCCAACCCCTATTTTTTACAGGAACTAGAACTGCAGGCCCAGATCCATGGCCTGCCAGTACCTCCCACTCC
................................................................................................................................................((.....((((........)))).........))........................................................................
................................................................................................................................................145....................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189785
..........................................................................................................................................................GACTCTGAACCCTACTT............................................................................... 171.000.00-------------------------------1.00----------
....................................................................................................................................................................................................................CAGGCCCAGATCCATGGGC................... 191.000.00--------------------1.00---------------------
....................................................................................................................................................................................CCAACCCCTATTTTTTAGGG.................................................. 201.000.00---------1.00--------------------------------
.........................................................................................................................................................................................................................CAGGCCATGGATCTGG................. 1620.500.50---------------------------------------0.50--
....................................................................................................................................AGGCAGAGGAGTATAA...................................................................................................... 1650.200.20----------------------------------------0.20-