ID: uc004dks.1_intron_0_0_chrX_48660550_f.5p
GENE: HDAC6(1)
chrX:48660500-48660749+


(2)
AGO2.ip 		(7)
B-CELL 		(6)
BREAST 		(22)
CELL-LINE 		(5)
CERVIX 		(3)
HEART 		(1)
HELA 		(4)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
AGGAGCGGGGCTGGTTGAAACGCTAGGGGCGGGATCTGGCGGAGTGGAAGGTACCGGTCCGGCCCGATAAGGGGTGGAGTTAAGTGAATCGTTAAGGGTGGAGTCGAAACCGGGGTCGGGGCCGGGGCCGGCTGAGTGAAAGGGTGGGTGATTATCCCGGGAGATAGGCCGAAAGGGCAGGTTCGTGAAGGAATGGGGTCTGGGCTGGGCTTAGAGGGTCTGGGAATGGGGCTTAGGAGAGTAGAAGGGG
.......................................................................................(((.(((.((.(((..(((...(((....)))...)))..))).))...)))...))).........................................................................................................
..............................................................................79...................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM339994(GSM339994)
hues6. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................GCCGGCTGAGTGAAAGGG..........................................................................................................18110.0010.00-6.00---1.00-3.00---------------------------------------------------
.................................ATCTGGCGGAGTGGAAGG.......................................................................................................................................................................................................1817.007.003.00-4.00--------------------------------------------------------
...................................CTGGCGGAGTGGAAGGTA.....................................................................................................................................................................................................1816.006.00----2.002.00-------------------------------1.00----------1.00----------
..............................................................................................................................GCCGGCTGAGTGAAAGGGT.........................................................................................................1916.006.003.00--------------1.00--------1.00-------------------------1.00--------
...................................................................................GTGAATCGTTAAGGGTGGAGTCGA...............................................................................................................................................2414.004.004.00----------------------------------------------------------
........................................................................................................................................................................................GTGAAGGAATGGGGTCTGGGC.............................................2114.004.004.00----------------------------------------------------------
...................................................................................................................................................................................GGTTCGTGAAGGAATGGGG....................................................1913.003.002.00--1.00-------------------------------------------------------
................................................................................................................................................................................................................GCTTAGAGGGTCTGGGAATGGGG...................2312.002.002.00----------------------------------------------------------
..................................................................................AGTGAATCGTTAAGGGTGGAGT..................................................................................................................................................2212.002.002.00----------------------------------------------------------
.....................................................................................................................................................................................TTCGTGAAGGAATGGGGT...................................................1812.002.001.00--1.00-------------------------------------------------------
................................................................................................................................CGGCTGAGTGAAAGGGTG........................................................................................................1812.002.00-----------------------1.00---------------1.00-------------------
..............................................................................................................................GCCGGCTGAGTGAAAGGGTG........................................................................................................2012.002.00----------1.00-------1.00----------------------------------------
.............................................................................................................................................................................AGGGCAGGTTCGTGAAGGAATGGGGT...................................................2612.002.00--------------2.00--------------------------------------------
.......................................................................................................................................................................................................CTGGGCTGGGCTTAGTAG.................................182.000.00--------------------1.00-----------------------1.00--------------
.....CGGGGCTGGTTGAAACGC...................................................................................................................................................................................................................................1812.002.00-1.00------------------------1.00--------------------------------
..................................TCTGGCGGAGTGGAAGG.......................................................................................................................................................................................................1712.002.00------1.00---------------------------------------1.00------------
..............................................................................................................................GCCGGCTGAGTGAAAGGGTGGG......................................................................................................2212.002.002.00----------------------------------------------------------
.................................................................................................................................................................AGATAGGCCGAAAGGGCA.......................................................................1812.002.00-----------------------------------1.001.00----------------------
.GGAGCGGGGCTGGTTGG........................................................................................................................................................................................................................................171.000.00--------1.00--------------------------------------------------
.GGAGCGGGGCTGGTTGAAA......................................................................................................................................................................................................................................1911.001.00------------------------------------------------------1.00----
..GAGCGGGGCTGGTTGAA.......................................................................................................................................................................................................................................1711.001.00-----------------1.00-----------------------------------------
..............................................................................................................................................................GGGAGATAGGCCGAAAGGGCAGA.....................................................................231.000.00---------------------------------------------------1.00-------
..........................................................................................GTTAAGGGTGGAGTCGAAACCGG.........................................................................................................................................2311.001.00-----------1.00-----------------------------------------------
...............................................................................TTAAGTGAATCGTTAAGGGT.......................................................................................................................................................2011.001.00------1.00----------------------------------------------------
........................AGGGGCGGGATCTGGCGGAGT.............................................................................................................................................................................................................2111.001.00---------------1.00-------------------------------------------
..........................................................................................................................................................................................................GGCTGGGCTTAGAGGTGT..............................181.000.00---------------------------------------------1.00-------------
.....................................................................................................................GGGGCCGGGGCCGGCTCTCC.................................................................................................................201.000.00---------1.00-------------------------------------------------
........................................................................................................................................................................................................................................TTAGGAGAGTAGAAGGGG1811.001.00----------------------1.00------------------------------------
..............................................................................GTTAAGTGAATCGTTAAGGGTG......................................................................................................................................................2211.001.00----------------------------------------------------1.00------
...................................CTGGCGGAGTGGAAGGTACCG..................................................................................................................................................................................................2111.001.00------------------1.00----------------------------------------
............................................................................................................................GGGCCGGCTGAGTGAAAGGGT.........................................................................................................2111.001.00------------------------------1.00----------------------------
................................................................................................................................CGGCTGAGTGAAAGGGTGGG......................................................................................................2011.001.00---1.00-------------------------------------------------------
..................................................................................................TGGAGTCGAAACCGGGGT......................................................................................................................................1811.001.00-------------1.00---------------------------------------------
.........................................................................GTGGAGTTAAGTGAATTT...............................................................................................................................................................181.000.001.00----------------------------------------------------------
...................ACGCTAGGGGCGGGATCTG....................................................................................................................................................................................................................1911.001.00-------------------------------1.00---------------------------
..............................................................................................................................................................................................................................GGAATGGGGCTTAGGGGGC.........191.000.00--------1.00--------------------------------------------------
......................................................................................................................................................................................................................................GCTTAGGAGAGTAGAGTTA.191.000.00-------------------------------------------------------1.00---
.......................................CGGAGTGGAAGGTACCGG.................................................................................................................................................................................................1811.001.00-------------------------------------------------1.00---------
.................................ATCTGGCGGAGTGGAAGT.......................................................................................................................................................................................................181.000.00--1.00--------------------------------------------------------
.................................ATCTGGCGGAGTGGAAGGGA.....................................................................................................................................................................................................2011.007.00----------1.00------------------------------------------------
...................ACGCTAGGGGCGGGATCT.....................................................................................................................................................................................................................1811.001.00----------------------------1.00------------------------------
..................................................................................................................................................................................AGGTTCGTGAAGGAATGGG.....................................................1911.001.00---1.00-------------------------------------------------------
............................................................................................................................................................CCGGGAGATAGGCCGAAAGGGCAGGTTCGT................................................................3011.001.00------------------------------------------1.00----------------
..............................................................................................................................GCCGGCTGAGTGAAATCTG.........................................................................................................191.000.00--------------------------------1.00--------------------------
..................................................................................................................................................................................................GGGGTCTGGGCTGGGCATA.....................................191.000.00---------1.00-------------------------------------------------
.......................................................................................................................................................................GCCGAAAGGGCAGGTTCGTGAAGGAATGGGGC...................................................321.000.00-------------1.00---------------------------------------------
...............................................................................................................................................................................................................GGCTTAGAGGGTCTGGTGGT.......................201.000.00-------------------------------------------1.00---------------
..............................................................................................................................GCCGGCTGAGTGAAAGGGC.........................................................................................................1911.0010.001.00----------------------------------------------------------
.............GTTGAAACGCTAGGGGCGGGATCTG....................................................................................................................................................................................................................2511.001.00-------------------------1.00---------------------------------
.................................................................................................GTGGAGTCGAAACCGGGGTCGGG..................................................................................................................................2311.001.001.00----------------------------------------------------------
..........................................................................................................................................................................................................................TCTGGGAATGGGGCTTGGA.............191.000.00--------------------------------------1.00--------------------
..............................................................................................................CGGGGTCGGGGCCGGGGCCGGC......................................................................................................................2211.001.00----1.00------------------------------------------------------
................................................................................................................................CGGCTGAGTGAAAGGGTGGT......................................................................................................201.000.00-----------------------------------------1.00-----------------
.........................................................................................................................................................................................................................GTCTGGGAATGGGGCTTAGGA............2111.001.001.00----------------------------------------------------------
..........................GGGCGGGATCTGGCGGAG..............................................................................................................................................................................................................1811.001.00----1.00------------------------------------------------------
...............................GGATCTGGCGGAGTGGAAGA.......................................................................................................................................................................................................201.000.00-----------------------------------------------------1.00-----
.................................................................................................................................................................................CAGGTTCGTGAAGGAATGGGG....................................................2111.001.00---1.00-------------------------------------------------------
...........................................................................................................................GGGGCCGGCTGAGTGAAA.............................................................................................................1811.001.00---------------------------------1.00-------------------------
........................AGGGGCGGGATCTGGCGGAGTGGAA.........................................................................................................................................................................................................2511.001.00------------1.00----------------------------------------------
.............................................................................................................................................................................AGGGCAGGTTCGTGAAGGA..........................................................1911.001.00----------------------------------1.00------------------------
...............................................................................TTAAGTGAATCGTTAAGG.........................................................................................................................................................1811.001.00----------------------------------------1.00------------------
.............................CGGGATCTGGCGGAGTGGAA.........................................................................................................................................................................................................2011.001.00---------------------------1.00-------------------------------
............................GCGGGATCTGGCGGAA..............................................................................................................................................................................................................161.000.00-----------------1.00-----------------------------------------
..............................................................................................AGGGTGGAGTCGAAACCG..........................................................................................................................................1811.001.00-----------------------------1.00-----------------------------
.......................................CGGAGTGGAAGGTACCGGTCCG.............................................................................................................................................................................................2211.001.00----------------1.00------------------------------------------
....................CGCTAGGGGCGGGATCTGG...................................................................................................................................................................................................................1911.001.00-----1.00-----------------------------------------------------
..............................GGGATCTGGCGGAGTGC...........................................................................................................................................................................................................171.000.00------------1.00----------------------------------------------
...........................................................................GGAGTTAAGTGAATCGTTAAG..........................................................................................................................................................2111.001.00------1.00----------------------------------------------------
...................................................................................GTGAATCGTTAAGGGTGGA....................................................................................................................................................1911.001.001.00----------------------------------------------------------
................................................................................................................................CGGCTGAGTGAAAGGG..........................................................................................................1620.500.50---------------------------------------------------------0.50-
........................................................................................................................................................................................................................................TTAGGAGAGTAGAAGG..1640.250.25----------------------------------------------------------0.25
..............................................................................................................CGGGGTCGGGGCCGGGGC..........................................................................................................................1850.200.20------0.20----------------------------------------------------

Antisense strand
AGGAGCGGGGCTGGTTGAAACGCTAGGGGCGGGATCTGGCGGAGTGGAAGGTACCGGTCCGGCCCGATAAGGGGTGGAGTTAAGTGAATCGTTAAGGGTGGAGTCGAAACCGGGGTCGGGGCCGGGGCCGGCTGAGTGAAAGGGTGGGTGATTATCCCGGGAGATAGGCCGAAAGGGCAGGTTCGTGAAGGAATGGGGTCTGGGCTGGGCTTAGAGGGTCTGGGAATGGGGCTTAGGAGAGTAGAAGGGG
.......................................................................................(((.(((.((.(((..(((...(((....)))...)))..))).))...)))...))).........................................................................................................
..............................................................................79...................................................................148....................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM339994(GSM339994)
hues6. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040011(GSM532896)
G529T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR040016(GSM532901)
G645N. (cervix)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR040038(GSM532923)
G531N. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343335SRR038857(GSM458540)
D20. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................CCGGGGTCGGGGCCGGGGGGGA....................................................................................................................... 222.000.00-------------------2.00---------------------------------------
...................................................................................................GGAGTCGAAACCGGGCGGT.................................................................................................................................... 191.000.00--------------------------------------------------------1.00--
...................................................................................................CCCGGTTTCGACTCC........................................................................................................................................ 1511.001.00-----------1.00-----------------------------------------------
...................................................................................................GGAGTCGAAACCGGGCG...................................................................................................................................... 171.000.00---------------------1.00-------------------------------------
........................................................................GGTGGAGTTAAGTGAACCC............................................................................................................................................................... 191.000.00-----------------------------------------------1.00-----------