ID: uc004dgz.1_intron_4_0_chrX_46949391_f.3p
GENE: RGN(5)
chrX:46950877-46951126+


(4)
B-CELL 		(3)
BRAIN 		(2)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(5)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
AGATATGCCTGTACCCAAACAAAAGACAATGAATCCATCCCAATCATGTGGTAAAAATCCTTTGTTCACATGCCAGACACTGGATAAGCTGAAGTGATCTGTATTTATAACCAGCTTGAGAGCTCTCGGTTTGATTCTCAGTATTTAGTGGCCTGTTGTTTTGTTGTGGTTCTGTTTTTGTTTTTGCCTTTTAACCATAGCCAACCGCAGAAGTGTTTACAAGCTAGAAAAGGAAGAACAAATCCCAGAT
.................................................................................................................((.((((((.((.......)))))))).....(((.((((..............)))))))...........))...............................................................
................................................................................................................113............................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR040032(GSM532917)
G603N. (cervix)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.....................................................................................................................GAGAGCTCTCGGTTTTTT...................................................................................................................1812.000.00----5.003.00-----------1.00-----1.00-----1.001.00------
.....................................................................................................................GAGAGCTCTCGGTTTTT....................................................................................................................176.000.00-------1.002.00-----1.00----------------1.001.00----
....................................................................................................................TGAGAGCTCTCGGTTTTT....................................................................................................................185.000.00----1.00-----------1.00--1.00-1.00--1.00------------
......................................................................................................................................................................TGGTTCTGTTTTTGTTTTTTGT..............................................................223.000.00-3.00-----------------------------------
......................................................................................................................................................................TGGTTCTGTTTTTGTTTTTTGTT.............................................................233.000.00-3.00-----------------------------------
......................................................................................................................................................................TGGTTCTGTTTTTGTTTTTGTT..............................................................223.000.00-3.00-----------------------------------
.....................................................................................................................GAGAGCTCTCGGTTTTTTT..................................................................................................................192.000.00----1.00----------------------1.00---------
.....................................................................................................................GAGAGCTCTCGGTTTT.....................................................................................................................162.000.00-------1.00------------1.00----------------
....................................................................................................................................................................TGTGGTTCTGTTTTTGTTTTGCT...............................................................232.000.00--2.00----------------------------------
......................................................................................................................................................................TGGTTCTGTTTTTGTTTTTGTTTT............................................................242.000.00-2.00-----------------------------------
......................................................................................................................................................................TGGTTCTGTTTTTGTTTTGTT...............................................................212.000.00-2.00-----------------------------------
.............................................................................................................................................................................................................................AGCTAGAAAAGGAAGAACAAATCC.....2412.002.00---------1.00--1.00------------------------
...............CAAACAAAAGACAATGAATCCATC...................................................................................................................................................................................................................2412.002.001.00--1.00---------------------------------
.............................................................................................................................................................................................................................AGCTAGAAAAGGAAGAACAAATC......2312.002.00---------1.001.00--------------------------
.................................................................................................................................................................TGTTGTGGTTCTGTTTGCG......................................................................191.000.00----------------------1.00--------------
.........................................................................................................................................................................TTCTGTTTTTGTTTTTGCCTTTTCT........................................................251.000.00--1.00----------------------------------
......................................................................................................................................................................TGGTTCTGTTTTTGTTACG.................................................................191.000.00-------------------------1.00-----------
.......................................................................................................................................................................GGTTCTGTTTTTGTTTTGTC...............................................................201.000.00--1.00----------------------------------
.............................................................................................................................................................................................................................AGCTAGAAAAGGAAGAACAAATCCCAG..2711.001.001.00------------------------------------
........................................................................................................................................................................................................................TTACAAGCTAGAAAAGGAA...............1921.001.00---------------------------------0.500.50--
....................................................................................................................TGAGAGCTCTCGGTTTTTT...................................................................................................................191.000.00-----------1.00-------------------------
................................................................................................ATCTGTATTTATAACCAGCTTGAG..................................................................................................................................2411.001.001.00------------------------------------
................................................................................................................................................................TTGTTGTGGTTCTGTTTTTTTGT...................................................................231.000.00--1.00----------------------------------
............................................................................................................................................................................................................................AAGCTAGAAAAGGAAGAACAAATCC.....2511.001.001.00------------------------------------
..........................................................................................................................................................................................................................ACAAGCTAGAAAAGGAAGA.............1911.001.00---1.00---------------------------------
...................................................................................................................................................................TTGTGGTTCTGTTTTTGTTTTCTT...............................................................241.000.00-1.00-----------------------------------
........................................................................................................................................................................GTTCTGTTTTTGTTTTGTTC..............................................................201.000.00--1.00----------------------------------
.................................................................................................................................................................................................................................AGAAAAGGAAGAACAAATCCC....2111.001.00---1.00---------------------------------
.........................................................................................................................................................TGTTGTTTTGTTGTGGTTTTTT...........................................................................221.000.00------1.00------------------------------
......................................................................................................................................................................................................................GTTTACAAGCTAGAAAAGGAAGAA............2411.001.001.00------------------------------------
........................................................................................................................................................................GTTCTGTTTTTGTTTTGCT...............................................................191.000.00--1.00----------------------------------
.......................................................................................................................................................................................................................TTTACAAGCTAGAAAAGGAAGA.............2211.001.001.00------------------------------------
................AAACAAAAGACAATGAATCCATCCC.................................................................................................................................................................................................................2511.001.001.00------------------------------------
.........................................................................................................TATAACCAGCTTGAGAGCT..............................................................................................................................1911.001.001.00------------------------------------
......................................................................................................................................................................TGGTTCTGTTTTTGTTTTTTTTT.............................................................231.000.00--1.00----------------------------------
.....................................................................................................................................................................................................................................AAGGAAGAACAAATCCCA...1811.001.00--------------------------1.00----------
....................................................................................................................TGAGAGCTCTCGGTTTT.....................................................................................................................171.000.00---------------1.00---------------------
..................................................................................................................................................................................................................AAGTGTTTACAAGCTAGAAAAGGAAG..............2611.001.00---1.00---------------------------------
.............................................................................................................................................................................................................................AGCTAGAAAAGGAAGAACAAATCCC....2511.001.001.00------------------------------------
......................................................................................................................................................................TGGTTCTGTTTTTGTTTTCC................................................................201.000.00------1.00------------------------------
....................................................................................................................................................................................................................................AAAGGAAGAACAAATCCCAGA.2111.001.001.00------------------------------------
...........................................................................................................................................................................................................................CAAGCTAGAAAAGGAAGAACAAA........2311.001.00---1.00---------------------------------
.......................................................................................................................................................................................................................TTTACAAGCTAGAAAAGGAAG..............2111.001.001.00------------------------------------
...........................................................................................................................................................................................................................CAAGCTAGAAAAGGAAGAACAAATCC.....2611.001.00---1.00---------------------------------
......................................................................................................................................................................................................................GTTTACAAGCTAGAAAAGGAAG..............2211.001.001.00------------------------------------
....................................................................................................................................................................TGTGGTTCTGTTTTTGTTTCG.................................................................211.000.00--1.00----------------------------------
.............................................................................................................................................................................................................................AGCTAGAAAAGGAAGAACAA.........2041.001.001.00------------------------------------
........................................................................................................................................................................GTTCTGTTTTTGTTTTTGGTT.............................................................211.000.00--1.00----------------------------------
.................................................................................................................................................................................TTGTTTTTGCCTTTTATAC......................................................191.000.00------1.00------------------------------
........................................................................................................TTATAACCAGCTTGAGAGCTC.............................................................................................................................2111.001.00---1.00---------------------------------
........................................................................................................................................................................................................................TTACAAGCTAGAAAAGGAAG..............2011.001.00---1.00---------------------------------
.......................................................................................................................................................................GGTTCTGTTTTTGTTTTTCGTT.............................................................221.000.00--1.00----------------------------------
........................................................................................................................................................................................................CCAACCGCAGAAGTGTTTACAAGCTAG.......................2711.001.001.00------------------------------------
.....................................................................................................................GAGAGCTCTCGGTTTTTA...................................................................................................................181.000.00----------------------------1.00--------
......................................................................................................................................................................TGGTTCTGTTTTTGTTTTTTGC..............................................................221.000.00--1.00----------------------------------
.............................................................................................................................................................................................................................AGCTAGAAAAGGAAGAACA..........1950.800.800.20--0.40-------------------------------0.20-
.............................................................................................................................................................................................................................AGCTAGAAAAGGAAGAACAAAT.......2220.500.50---0.50---------------------------------
...........................................................................................................................................................................................................................CAAGCTAGAAAAGGAAGAA............1920.500.50---0.50---------------------------------
...................................................................................................................................................GTGGCCTGTTGTTTT........................................................................................1580.120.12------------------------------------0.12

Antisense strand
AGATATGCCTGTACCCAAACAAAAGACAATGAATCCATCCCAATCATGTGGTAAAAATCCTTTGTTCACATGCCAGACACTGGATAAGCTGAAGTGATCTGTATTTATAACCAGCTTGAGAGCTCTCGGTTTGATTCTCAGTATTTAGTGGCCTGTTGTTTTGTTGTGGTTCTGTTTTTGTTTTTGCCTTTTAACCATAGCCAACCGCAGAAGTGTTTACAAGCTAGAAAAGGAAGAACAAATCCCAGAT
.................................................................................................................((.((((((.((.......)))))))).....(((.((((..............)))))))...........))...............................................................
................................................................................................................113............................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786SRR040032(GSM532917)
G603N. (cervix)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
.............CCCAAACAAAAGACAAGTA.......................................................................................................................................................................................................................... 191.000.00--1.00----------------------------------
..............................................................................................................................................................................TTTTTGTTTTTGCCTTTAGG........................................................ 201.000.00-------------1.00-----------------------
............................................................................................................................................................................................................................AAGCTAGAAAAGGAACATT........... 191.000.00------------------1.00------------------
.................................................................CAGTGTCTGGCATGTGA........................................................................................................................................................................ 1770.140.14----------0.14--------------------------