ID: uc004dbc.2_intron_2_0_chrX_24075666_f
GENE: (3)
chrX:24075616-24075799+


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(14)
CELL-LINE 		(1)
FIBROBLAST 		(5)
HEART 		(11)
HELA 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(12)
SKIN 		(2)
XRN.ip

Sense strand
ATGAACTAGAAAGAAATATTACAATCAAGCTTGGATATGCTAATGCTAAGGTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTTAGATTTATAAGCTTGATGACCCAAGTTGCCCTCGGCCAGAATGTTATAGATC
........................................................(((...(((((.(((((..............))))).)))))...)))................................................................................
..................................................51.................................................................................134................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR343335SRR343334SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR343337SRR029124(GSM416753)
HeLa. (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR343336SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTTAG..................................................841269.00269.00172.0082.00--9.00-2.003.00---------------------------1.00--------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTTAGT.................................................85128.00269.005.0020.00----3.00-------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGG....................................................................................................................18126.0026.00--11.0013.00---------1.00----------1.00-------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTTA...................................................83118.0018.00-15.00--1.00-1.001.00------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTT....................................................82111.0011.00-10.00-----1.00------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTAT.............................................................7319.009.00-9.00------------------------------------------------------------
.............AAATATTACAATCAAGC..........................................................................................................................................................1747.007.00--------3.751.75------------------0.25----------------------0.75---0.50------
............................................................................................................AAAATCTTTTTTTATATG..........................................................187.000.00-----6.00-----------------1.00--------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAA...........................................................................................................2717.007.00--7.00-----------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGA...................................................................................................................1916.006.00--3.00----------1.00-2.00----------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTTTTT.................................................8516.0011.00-6.00------------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATA......................................................................645.000.00-5.00------------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCA...........................................................................5914.004.00-4.00------------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTT...................................................................6714.004.004.00-------------------------------------------------------------
..................................................................................................................................................................CTCGGCCAGAATGTTATAG...1914.004.00----------------------1.00-1.001.00-----------------1.00------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTT.....................................................8114.004.00-4.00------------------------------------------------------------
..................................................GTAAGCTGTGTACTGTG.....................................................................................................................1713.003.00-----------3.00--------------------------------------------------
..............AATATTACAATCAAGC..........................................................................................................................................................1642.502.50--------1.501.00----------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAG......................................................................................4812.002.00-2.00------------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAAC..........................................................................................................2812.002.00--1.00------------------------------------1.00----------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACT.....................................................................................................3312.002.00--------------------------------------------1.00---1.00-------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGAT....................................................................................5012.002.00-2.00------------------------------------------------------------
...........................................................................................................................................................AGTTGCCCTCGGCCAGAATGTTATAG...2612.002.00--------------2.00-----------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAA.......................................................................................................3112.002.00---------------------------------1.00-------1.00--------------------
...................................................................................................................................................................TCGGCCAGAATGTTATAG...1812.002.00----------1.00--------1.00------------------------------------------
......................AATCAAGCTTGGATATG.................................................................................................................................................1721.501.50----------1.00-------0.50-------------------------------------------
....................ACAATCAAGCTTGGATATGC................................................................................................................................................2021.501.50--1.50-----------------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTA........................................................................................................3011.001.00-------------------------------------------------1.00------------
........................................TAATGCTAAGGTAAGCTGTGTACTGTGG....................................................................................................................2811.001.00------------------------------------------1.00-------------------
..............................................................................TAACTTTAATTGTTGTGCAGATAACA................................................................................2611.001.00------------1.00-------------------------------------------------
............................................................................................................AAAATCTTTTTTTATATTC.........................................................191.000.00-----1.00--------------------------------------------------------
..........................................................................................................................................................AAGTTGCCCTCGGCCAGAATGTTATAG...2711.001.00------------------1.00-------------------------------------------
.......................................................CTGTGTACTGTGGAACGAGAAACTAA.......................................................................................................2611.001.00-----------------1.00--------------------------------------------
............................................................TACTGTGGAACGAGAAACTAACT.....................................................................................................2311.001.00--1.00-----------------------------------------------------------
................................................AGGTAAGCTGTGTACTGTGGAACGAGAAACTAACTT....................................................................................................3611.001.00----------------1.00---------------------------------------------
......................................GCTAATGCTAAGGTAAGCTGTGTA..........................................................................................................................2411.001.00--------------------------------------------------1.00-----------
............................................................................................................AAAATCTTTTTTTATATTG.........................................................191.000.00-------------------------------------1.00------------------------
.........................................................................................................................................................CAAGTTGCCCTCGGCCAG.............1821.001.00------------------0.50-------0.50-----------------------------------
.............AAATATTACAATCAAGCTTGA......................................................................................................................................................211.000.00---------1.00----------------------------------------------------
...................................................TAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTTAG..................................................8311.001.00----1.00---------------------------------------------------------
.........................................................GTGTACTGTGGAACGAGAAACTAAC......................................................................................................2511.001.00---------------1.00----------------------------------------------
...........................................................................................................................................................AGTTGCCCTCGGCCAGAATGTTATAGATC2911.001.00------------------------------------1.00-------------------------
................................................................................................................................................................CCCTCGGCCAGAATGTTATAG...2111.001.00-------------------1.00------------------------------------------
..........................................................................................................................................................AAGTTGCCCTCGGCCGAT............181.000.00---------------------------------------------1.00----------------
....................................................................................................................................................................CGGCCAGAATGTTATAGAT.1911.001.00------------------------------1.00-------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTCAG..................................................8411.004.001.00-------------------------------------------------------------
...........................................................................................................................................................AGTTGCCCTCGGCCAGAATGTTATAGA..2711.001.00--------------------------------1.00-----------------------------
...................................................................................................................................................ATGACCCAAGTTGCCCTCGGCCAGTACG.........281.000.00----------------------------1.00---------------------------------
.....................................................................................................................................GATTTATAAGCTTGATGACCC..............................2111.001.00----------1.00---------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAAA......................................................................................................3211.002.00--------------------------------------1.00-----------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATC............................................................................5811.001.00----1.00---------------------------------------------------------
..................................ATATGCTAATGCTAAGAAA...................................................................................................................................191.000.00----------------------1.00---------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTA..................................................................................................3611.001.00-------------------------------1.00------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAA............................................................................................................2611.001.00------------1.00-------------------------------------------------
..........................................................................................................................................................AAGTTGCCCTCGGCCAGAATGTT.......2321.001.00----------------------------------------1.00---------------------
.........................................................GTGTACTGTGGAACGAGAAACTAAAA.....................................................................................................261.000.00-----------------1.00--------------------------------------------
.......................................................CTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTTAG..................................................7911.001.00-------1.00------------------------------------------------------
.........................................................................................GTTGTGCAGATAACAAATCAAAATCT.....................................................................2611.001.00------------1.00-------------------------------------------------
.............................................................................................................AAATCTTTTTTTATTGAAAT.......................................................2011.001.00---------------------1.00----------------------------------------
.........................................................................................................................................................CAAGTTGCCCTCGGCCAGAATGTTATAGATC3111.001.00----------------------------------1.00---------------------------
...............................................................................................................ATCTTTTTTTATTGAAATTTTA...................................................2211.001.00---------------------1.00----------------------------------------
..............................................................................................................................................GCTTGATGACCCAAGTTGCCCTCGG.................2511.001.00----------------1.00---------------------------------------------
..........................................................................................................................................................AAGTTGCCCTCGGCCAGAATGTTATAGAA.291.000.00----------------------------------------------1.00---------------
...........................................................................................................................................................AGTTGCCCTCGGCCAGAATGTT.......2221.001.00---------------------------1.00----------------------------------
..................................................GTAAGCTGTGTACTGTGGAA..................................................................................................................2011.001.00-------------1.00------------------------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAG..............................................................................................................2411.001.00--------------1.00-----------------------------------------------
.........................................................................................................ATCAAAATCTTTTTTTATTG...........................................................2011.001.00--------------------1.00-----------------------------------------
............................................................................................................................................AAGCTTGATGACCCAAGTTGCCCTCGGCCAGA............3211.001.00--------------------------1.00-----------------------------------
..................................................GTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTATAG..................................................841.000.001.00-------------------------------------------------------------
......................................................GCTGTGTACTGTGGAACGA...............................................................................................................1911.001.00-----------------------------1.00--------------------------------
...............ATATTACAATCAAGC..........................................................................................................................................................1590.560.56--------0.110.44----------------------------------------------------
............GAAATATTACAATCAAGCTTGGATA...................................................................................................................................................2520.500.50-------------------------0.50------------------------------------
.....................CAATCAAGCTTGGATATGCTAATG...........................................................................................................................................2420.500.50-----------------------------------------------------------0.50--
.....................CAATCAAGCTTGGATATGCTAATGCT.........................................................................................................................................2620.500.50----------------------------------------------------0.50---------
.................ATTACAATCAAGCTTGG......................................................................................................................................................1720.500.50--------------------------------------------------------0.50-----
.................ATTACAATCAAGCTTGGATAT..................................................................................................................................................2120.500.50-------------------------------------------------------------0.50
.......AGAAAGAAATATTACAATCAAGCTTGGATATG.................................................................................................................................................3220.500.50-----------------------0.50--------------------------------------
..................TTACAATCAAGCTTGGATATGCTAAT............................................................................................................................................2620.500.50---------------------------------------------------------0.50----
.............................................................................................................................................................TTGCCCTCGGCCAGAATGTTAT.....2220.500.50-----------------------------------------------------0.50--------
......................AATCAAGCTTGGATATGCTAATGCT.........................................................................................................................................2520.500.50-----------------------------------------------0.50--------------
...................TACAATCAAGCTTGGATAT..................................................................................................................................................1920.500.50---------------------------0.50----------------------------------
.......................ATCAAGCTTGGATATGCTAATG...........................................................................................................................................2220.500.50------------------------------------------------------------0.50-
....................ACAATCAAGCTTGGATAT..................................................................................................................................................1820.500.50-----------------------0.50--------------------------------------
.....................................................................................................................................GATTTATAAGCTTGATG..................................1720.500.50----------------------------------------------------------0.50---
.......................ATCAAGCTTGGATATGCTA..............................................................................................................................................1920.500.50------------------------------------------------------0.50-------
..........................AAGCTTGGATATGCTAATGCT.........................................................................................................................................2120.500.50-----------------------------------------------0.50--------------

Antisense strand
ATGAACTAGAAAGAAATATTACAATCAAGCTTGGATATGCTAATGCTAAGGTAAGCTGTGTACTGTGGAACGAGAAACTAACTTTAATTGTTGTGCAGATAACAAATCAAAATCTTTTTTTATTGAAATTTTAGATTTATAAGCTTGATGACCCAAGTTGCCCTCGGCCAGAATGTTATAGATC
........................................................(((...(((((.(((((..............))))).)))))...)))................................................................................
..................................................51.................................................................................134................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR343335SRR343334SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR343337SRR029124(GSM416753)
HeLa. (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR343336SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191399(GSM715509)
36genomic small RNA (size selected RNA from t. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
......................................................................................ATTGTTGTGCAGATAATTG............................................................................... 191.000.00--------------------1.00-----------------------------------------