ID: uc004bpo.2_intron_3_0_chr9_128061386_f.3p
GENE: (4)
chr9:128064062-128064311+


(1)
BREAST
(6)
CELL-LINE
(1)
HEART
(1)
KIDNEY
(1)
LIVER
(2)
OTHER
(3)
SKIN

Sense strand
GGAAATTGTCCTTTGTACTTTTTAGTTTTGTTGTCCTTTACTCATTGAGTTGCTGTTAGTTTAAAAAATTTTAGCAATTCAGAGTGACCTCATTGTTGGGACCATAATCAACTCACATATCCATGTTTGGATATAGTATATGTGTTATTATTATTAATACTATTATTTTGCTTGTTTGCTCTTTTTTTTTTTTTTTTTAGTGCTGAAGCTTCCCCTGCTGAATGTTGCCAACATGCCAAAATTTTGGAAG
.......................................................................................................................((((....))))...((((...((((((.......))))))...))))..((......)).......................................................................
.......................................................................................................................120..........................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..............................................................................................................................................................ACTATTATTTTGCTTACTT.........................................................................193.000.00--3.00------------
.......................................................................................................................................................................................................................TGCTGAATGTTGCCAACATGCCAAAA.........2612.002.00----2.00----------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTTTGGG.................................................252.000.002.00--------------
.................................................................................................................................................................................GCTCTTTTTTTTTTTTTTGCAG...................................................222.000.002.00--------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTTTAGTGCGGGA...........................................261.000.00-1.00-------------
..................TTTTTAGTTTTGTTGTGGG.....................................................................................................................................................................................................................191.000.00--1.00------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTCGCC..................................................241.000.001.00--------------
............................................................................................................................GTTTGGATATAGTATATGTGTTAT......................................................................................................2411.001.00-------------1.00-
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTTGGTG.................................................251.000.00-1.00-------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTTTCATG................................................261.000.001.00--------------
..............................................................................................................................................................................TTTGCTCTTTTTTTTTTTTTGGT.....................................................231.000.00-1.00-------------
............................................................................................................................................................................TGTTTGCTCTTTTTTTTTTACGG.......................................................231.000.00-1.00-------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTTAGTGCTGGT...........................................241.000.00-1.00-------------
....................................................................................................ACCATAATCAACTCACATATCCATG.............................................................................................................................2511.001.00--------1.00------
..............................................................................................................................................................................TTTGCTCTTTTTTTTTAGTG........................................................201.000.001.00--------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTTCCCG..................................................251.000.00-1.00-------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTTTTAAAG................................................271.000.00--1.00------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTTTCGGG................................................261.000.001.00--------------
..................................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTACTAG...............................................251.000.00------1.00--------
..............................................................................................................................................................................TTTGCTCTTTTTTTTTTTTTTTGGA...................................................251.000.00-1.00-------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTCCC.......................................................201.000.00-1.00-------------
.................................................................................................................................................................................GCTCTTTTTTTTTTTTTTTTTCTGC................................................251.000.001.00--------------
.......................................................................................................................................................................................................................TGCTGAATGTTGCCAACATGCCAAAATTTTGGA..3311.001.00--------------1.00
..............................................................................................................................................................................TTTGCTCTTTTTTTTTTTTTTTTTGTA.................................................271.000.001.00--------------
.....................................................................................................................................................................TTTTGCTTGTTTGCTCTTTTTTTTTCT..........................................................271.000.00-1.00-------------
..................................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTACACG...............................................251.000.00------1.00--------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTTTTAAGG................................................271.000.001.00--------------
.............................................................................................................................................................................GTTTGCTCTTTTTTTTTTTTTTTTAAG..................................................271.000.00--1.00------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTCCCC...................................................241.000.00-1.00-------------
......................................................................................................................................................................TTTGCTTGTTTGCTCTGG..................................................................181.000.001.00--------------
..............................................................................................................................................................................TTTGCTCTTTTTTTTTTTATG.......................................................211.000.00-1.00-------------
..............................................................................................................................................................................TTTGCTCTTTTTTTTTTTTTTTCTCC..................................................261.000.00-1.00-------------
........................................................................................CTCATTGTTGGGACCGGCA...............................................................................................................................................191.000.00---------1.00-----
..................................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTACCAG...............................................251.000.00---1.00-----------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTTTGTTC................................................261.000.00-1.00-------------
............................................TTGAGTTGCTGTTAGTCTAG..........................................................................................................................................................................................201.000.00-----1.00---------
..............................................................................................................................................................................TTTGCTCTTTTTTTTTTTTTTCCCC...................................................251.000.001.00--------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTCTGC......................................................211.000.001.00--------------
...................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTAGTGAAC.............................................261.000.00-1.00-------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTCTGG....................................................231.000.00-1.00-------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTTTGTT.................................................251.000.001.00--------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTGTG....................................................221.000.00---1.00-----------
........................................................................................................................................................................................................TGCTGAAGCTTCCCCTAAG...............................191.000.00------------1.00--
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTAAGG...................................................241.000.00-1.00-------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTTCAG..................................................241.000.001.00--------------
.................................................................................................................................................................................GCTCTTTTTTTTTTTTTTTTTCCGC................................................251.000.001.00--------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTTGTTG..................................................251.000.001.00--------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTCGAG..................................................241.000.001.00--------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTCTGC..................................................241.000.001.00--------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTTCCGG..................................................251.000.001.00--------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTGCAG...................................................231.000.001.00--------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTTTCATG.................................................261.000.001.00--------------
..................................................................................................................................................................................CTCTTTTTTTTTTTTTTTTTACATT...............................................251.000.00-------1.00-------
..............................................................................................................................................................................TTTGCTCTTTTTTTTTTTGTT.......................................................211.000.00-1.00-------------
................................................................................................................................................................................TGCTCTTTTTTTTTTTTTTTTCCCG.................................................251.000.001.00--------------
...........................................................................................................................................................................TTGTTTGCTCTTTTTTTTTTTTTTTTTTGAG................................................311.000.001.00--------------
...............................................................................................................................................................................TTGCTCTTTTTTTTTTTTTTTTTAG..................................................2520.500.500.50--------------
...........................................................................................................................................................AATACTATTATTTTGC...............................................................................1680.250.250.25--------------
.................................................................................................................................................................................GCTCTTTTTTTTTTTTTTTTTAG..................................................2360.170.17-------0.17-------
.........................................................................................................................................................................................TTTTTTTTTTTTTAGTGCTG.............................................2080.120.120.12--------------

Antisense strand
GGAAATTGTCCTTTGTACTTTTTAGTTTTGTTGTCCTTTACTCATTGAGTTGCTGTTAGTTTAAAAAATTTTAGCAATTCAGAGTGACCTCATTGTTGGGACCATAATCAACTCACATATCCATGTTTGGATATAGTATATGTGTTATTATTATTAATACTATTATTTTGCTTGTTTGCTCTTTTTTTTTTTTTTTTTAGTGCTGAAGCTTCCCCTGCTGAATGTTGCCAACATGCCAAAATTTTGGAAG
.......................................................................................................................((((....))))...((((...((((((.......))))))...))))..((......)).......................................................................
.......................................................................................................................120..........................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
......................TAGTTTTGTTGTCCTTGAT................................................................................................................................................................................................................. 191.000.00-----------1.00---
...........................................ATTGAGTTGCTGTTATTTG............................................................................................................................................................................................ 191.000.00-----1.00---------
..........................................CATTGAGTTGCTGTTTCGA............................................................................................................................................................................................. 191.000.00----------1.00----