ID: uc004bpn.2_intron_2_0_chr9_128001107_r
GENE: (5)
chr9:128001057-128001269-


(2)
AGO2.ip 		(4)
B-CELL 		(6)
BREAST 		(25)
CELL-LINE 		(6)
CERVIX 		(2)
FIBROBLAST 		(5)
HEART 		(8)
HELA 		(9)
LIVER 		(4)
OTHER 		(29)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
AAGACTTTTCTGAGACCCTGACTCGGGCCAAATTTGAAGAGCTCAACATGGTATGTTCCTTGTTTTCTGCTTTGCTAATGAGATCTCCTTAGACTCTGAATTCAGGACATTGCATCTAGATACTTAGATAACAGACATCACAGTAACCATGTCTTTTTTCTAGGATCTGTTCCGGTCTACTATGAAGCCCGTCCAGAAAGTGTTGGAAGATTC
.........................................................................................((((.((((....)))).......((((((....))))))...((((((..........))))))....))))...................................................
...................................................................................84.............................................................................163................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189782SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR040023(GSM532908)
G575T. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		GSM532929(GSM532929)
G702N. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................................CACAGTAACCATGTCTTTTTTCTAG..................................................25121.0021.002.009.00-----------3.00------------------1.00--1.00------1.001.001.00--1.00------------------------------1.00-----------------------
................................................................................................................................................................................................CCAGAAAGTGTTGGAAGATT.20112.0012.00-----3.00--5.00-----2.00----------------------------------------------1.00-------------------------1.00--------------
...............................................................................................CTGAATTCAGGACATTGCATCTAGATACTTAGATAACAGACATCACAGTAACCATGTCTTTTTTCTAG..................................................6817.007.00----7.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................AGAAAGTGTTGGAAGATTC1917.007.00--3.00-------1.00-----2.00-1.00-----------------------------------------------------------------------------------
......................................................................................CCTTAGACTCTGAATTCAGGACATTGCATCTAGATACTTAGATAACAGACATCACAGTAACCATGTCTTTTTTCT....................................................7517.007.00---7.00--------------------------------------------------------------------------------------------------
.................................TTGAAGAGCTCAACATG...................................................................................................................................................................1715.005.002.00------------------------1.00---------------1.00-----------------------------1.00------------------------------
................................TTTGAAGAGCTCAACATG...................................................................................................................................................................1815.005.00-------1.00-2.00-----2.00--------------------------------------------------------------------------------------
..........................................................................................................................................CACAGTAACCATGTCTTTTTTCTAGAA................................................2714.0021.004.00-----------------------------------------------------------------------------------------------------
..................TGACTCGGGCCAAATTTGAAGA.............................................................................................................................................................................2214.004.00--3.00------------1.00--------------------------------------------------------------------------------------
..........................................................................................................................................CACAGTAACCATGTCTTTTTTCTAGA.................................................2613.0021.002.00-------------------------------1.00---------------------------------------------------------------------
..................................................GTATGTTCCTTGTTTTCTGCTTTGCT.........................................................................................................................................2613.003.00-----------3.00------------------------------------------------------------------------------------------
............................CAAATTTGAAGAGCTCAAC......................................................................................................................................................................1923.003.00-3.00----------------------------------------------------------------------------------------------------
...ACTTTTCTGAGACCCTGACTCGG...........................................................................................................................................................................................2313.003.00-----3.00------------------------------------------------------------------------------------------------
..........TGAGACCCTGACTCGGGCCAA......................................................................................................................................................................................2113.003.00--2.00----------------------------------------------------------------------1.00----------------------------
.......TTCTGAGACCCTGACTCGGGC.........................................................................................................................................................................................2113.003.00------------3.00-----------------------------------------------------------------------------------------
........................................................................................TTAGACTCTGAATTCAGG...........................................................................................................1812.002.00---------------------------2.00--------------------------------------------------------------------------
...............................ATTTGAAGAGCTCAACATG...................................................................................................................................................................1912.002.00----------------------------------------1.00-------1.00-----------------------------------------------------
..........................................................................................................................................CACAGTAACCATGTCTTTTT.......................................................2012.002.00----------------------------2.00-------------------------------------------------------------------------
..................................TGAAGAGCTCAACATGGATC...............................................................................................................................................................202.000.00------1.00---------------------------------------1.00-------------------------------------------------------
.....................CTCGGGCCAAATTTGAAGAGC...........................................................................................................................................................................2112.002.00------------------------------1.00-----------------------------1.00-----------------------------------------
.AGACTTTTCTGAGACCCTGACTCG............................................................................................................................................................................................2412.002.00-----------------------2.00------------------------------------------------------------------------------
..........................................................................................................................................CACAGTAACCATGTCTTTTTTCTAGG.................................................2612.002.002.00-----------------------------------------------------------------------------------------------------
......................................................................................................................GATACTTAGATAACAGACATCACAG......................................................................2512.002.00----------------------------------------------------------------------------------1.00--1.00----------------
................................................................................................TGAATTCAGGACATTGCAT..................................................................................................1912.002.00-------------------1.00-1.00--------------------------------------------------------------------------------
...........................................................................................................................................................................CCGGTCTACTATGAAGTTT.......................192.000.002.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................CAGAAAGTGTTGGAAGATT.1912.002.00--------------------1.00-------------------------------------------------------------------1.00-------------
..................................TGAAGAGCTCAACATG...................................................................................................................................................................1631.671.67-------1.00-0.67--------------------------------------------------------------------------------------------
............................................................................................................................................................................CGGTCTACTATGAAGCCCGTCCAGAAAG.............2811.001.00----------1.00-------------------------------------------------------------------------------------------
.............................................................................................................................................................................................CGTCCAGAAAGTGTTGG.......1711.001.001.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................GATCTGTTCCGGTCTACTAT..............................2011.001.00---------------------------------------------------------------------------1.00--------------------------
.............................AAATTTGAAGAGCTCAACA.....................................................................................................................................................................1911.001.00-------------------------------------------------------------------------------1.00----------------------
.......................................................................................................................................................................................GAAGCCCGTCCAGAAAGT............1811.001.00----------------------1.00-------------------------------------------------------------------------------
........TCTGAGACCCTGACTCGGGCC........................................................................................................................................................................................2111.001.00---------------------1.00--------------------------------------------------------------------------------
........TCTGAGACCCTGACTTGT...........................................................................................................................................................................................181.000.00----------------------------------------------------------------------1.00-------------------------------
....................................................................................................................................................................ATCTGTTCCGGTCTACTATGAAGCC........................2511.001.00-------------------------------------------------------1.00----------------------------------------------
...ACTTTTCTGAGACCCTGACTCGGGCC........................................................................................................................................................................................2611.001.00--------------------------------------------------1.00---------------------------------------------------
..........................GCCAAATTTGAAGAGCTCAACATGGA.................................................................................................................................................................261.000.00----------1.00-------------------------------------------------------------------------------------------
......TTTCTGAGACCCTGACTCGGGCCAAATTTGAAG..............................................................................................................................................................................3311.001.00---------1.00--------------------------------------------------------------------------------------------
...............CCCTGACTCGGGCCAAATTTGAAGAA............................................................................................................................................................................261.000.00--------------------------------------------------------------------------------------1.00---------------
...................................................................................................................................................................................CTATGAAGCCCGTCCAGAAAGTGTTG........2611.001.00------------------------------------------------------------------------1.00-----------------------------
.........CTGAGACCCTGACTCGGGCCAAATTTGAAG..............................................................................................................................................................................3011.001.00-----------------1.00------------------------------------------------------------------------------------
................................................................................................................................................................................................CCAGAAAGTGTTGGAAGATTC2111.001.00----------------------------------------------------------------1.00-------------------------------------
.................................TTGAAGAGCTCAACATGG..................................................................................................................................................................1811.001.00---------------------------------------------------1.00--------------------------------------------------
...........................................................................................................................................ACAGTAACCATGTCTTTTTTCTAGA.................................................251.000.001.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................CAGAAAGTGTTGGAAGCT..181.000.00-----------------------------------------------------------1.00------------------------------------------
...................GACTCGGGCCAAATTTGA................................................................................................................................................................................1811.001.00----------------------1.00-------------------------------------------------------------------------------
.....TTTTCTGAGACCCTGACTCGGGCCAAA.....................................................................................................................................................................................2711.001.00--1.00---------------------------------------------------------------------------------------------------
....................................AAGAGCTCAACATGGATC...............................................................................................................................................................181.000.00-------------------------------1.00----------------------------------------------------------------------
.................................TTGAAGAGCTCAACATGGATCT..............................................................................................................................................................2211.001.00------1.00-----------------------------------------------------------------------------------------------
...ACTTTTCTGAGACCCTGACTCGGGCCAAATTT..................................................................................................................................................................................3211.001.00-----------------1.00------------------------------------------------------------------------------------
................CCTGACTCGGGCCAAATT...................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------1.00-----------------
................................................................................AGATCTCCTTAGACTCTGAATTCAGGACATTGCATCTAGATACTTAGATAACAGACATCACAGTAACCATGTCTTTTTTCTAGGATCT.............................................8811.001.00-----------------------------------------------------------------------------------------1.00------------
............................CAAATTTGAAGAGCTCAACATGG..................................................................................................................................................................2311.001.00--------------1.00---------------------------------------------------------------------------------------
......TTTCTGAGACCCTGACATGT...........................................................................................................................................................................................201.000.00-----------------------------------------------------------------------------------1.00------------------
......TTTCTGAGACCCTGACTCGG...........................................................................................................................................................................................2011.001.00--------------------------1.00---------------------------------------------------------------------------
...........................................................................................................................................................................CCGGTCTACTATGAAGCC........................1811.001.00------------------------1.00-----------------------------------------------------------------------------
.................................................................................................................................................................................................CAGAAAGTGTTGGAAGATTCTTAT241.000.00------------------------------------------------------------------------------------------1.00-----------
.......................................................................................................................................................................................GAAGCCCGTCCAGAAAGTGTTGGA......2411.001.00-------------------------------------------------1.00----------------------------------------------------
..................................................................................ATCTCCTTAGACTCTGAATTCAGGACAT.......................................................................................................2811.001.00---------------------------------------------------------------------1.00--------------------------------
.............................AAATTTGAAGAGCTCAACATGGATC...............................................................................................................................................................251.000.00----------1.00-------------------------------------------------------------------------------------------
.....................CTCGGGCCAAATTTGAAGAGCTCA........................................................................................................................................................................2411.001.00----------------------------------1.00-------------------------------------------------------------------
......TTTCTGAGACCCTGACTCG............................................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------1.00---------------------
..................................TGAAGAGCTCAACATGGAT................................................................................................................................................................191.000.00------1.00-----------------------------------------------------------------------------------------------
...........GAGACCCTGACTCGGGC.........................................................................................................................................................................................1711.001.00-------------------1.00----------------------------------------------------------------------------------
............................CAAATTTGAAGAGCTCAACATG...................................................................................................................................................................2211.001.00-------1.00----------------------------------------------------------------------------------------------
..............ACCCTGACTCGGGCCAAATTTGAAGA.............................................................................................................................................................................2611.001.00-------1.00----------------------------------------------------------------------------------------------
...ACTTTTCTGAGACCCTGACTCGGGC.........................................................................................................................................................................................2511.001.00--------------------------------------------------------------------1.00---------------------------------
.....................CTCGGGCCAAATTTGAAGAGCT..........................................................................................................................................................................2211.001.00---------------------------------------------------------------1.00--------------------------------------
.AGACTTTTCTGAGACCCTGACTCGGGC.........................................................................................................................................................................................2711.001.00--------------------------------------------------------1.00---------------------------------------------
.............................AAATTTGAAGAGCTCAACATGGTATGT.............................................................................................................................................................2711.001.00--------------------1.00---------------------------------------------------------------------------------
.................................TTGAAGAGCTCAACATGGTATGTTCCTT........................................................................................................................................................2811.001.00-----------------------------1.00------------------------------------------------------------------------
........................................................................................................................................................................................AAGCCCGTCCAGAAAGTGT..........1911.001.00----------------1.00-------------------------------------------------------------------------------------
...........GAGACCCTGACTCGGGCCAAA.....................................................................................................................................................................................2111.001.00--1.00---------------------------------------------------------------------------------------------------
.....................................................................................................................................................................TCTGTTCCGGTCTACTATGAAGC.........................2311.001.00-------------------------------------------------------------------------------------------1.00----------
...............................................................................................................................................TAACCATGTCTTTTTTCTAG..................................................2011.001.00-----------------------------------------------------1.00------------------------------------------------
.....................................................................................................................................................................TCTGTTCCGGTCTACT................................1611.001.00---------------------------------------1.00--------------------------------------------------------------
..............................................................................................................................................................................................GTCCAGAAAGTGTTGGAAGATTC2311.001.00------------------1.00-----------------------------------------------------------------------------------
..........................................................................................................................................................................TCCGGTCTACTATGAAGCC........................1911.001.001.00-----------------------------------------------------------------------------------------------------
..............................AATTTGAAGAGCTCAACATGG..................................................................................................................................................................2111.001.00--------------------------1.00---------------------------------------------------------------------------
...............................................................................................................................................................CTAGGATCTGTTCCGGTCT...................................1911.001.00-------------------------------------1.00----------------------------------------------------------------
..................................................................................................................................................................................................AGAAAGTGTTGGAAGATT.1811.001.00-------------------------------------------------------------------1.00----------------------------------
..................TGACTCGGGCCAAATTTGAAGAGC...........................................................................................................................................................................2411.001.00---------------------------------1.00--------------------------------------------------------------------
...ACTTTTCTGAGACCCTGACTCGGGTCA.......................................................................................................................................................................................271.000.00--------------------------------------------------------------------------1.00---------------------------
.........................................................................................................................................TCACAGTAACCATGTCTTTTTTCTAGA.................................................271.000.001.00-----------------------------------------------------------------------------------------------------
....................................................................................................................................................................ATCTGTTCCGGTCTACT................................1711.001.00-------------------------1.00----------------------------------------------------------------------------
....................ACTCGGGCCAAATTTGAAGAGCT..........................................................................................................................................................................2311.001.00-------1.00----------------------------------------------------------------------------------------------
..................................................................................................................................................................................ACTATGAAGCCCGTCCAGAAAGT............2311.001.00----------------------------------------------------------------------------1.00-------------------------
.....................................................................................................................................................................TCTGTTCCGGTCTAC.................................1511.001.00--------------------------------------1.00---------------------------------------------------------------
.................CTGACTCGGGCCAAATTTGAAGAGCTCAACATG...................................................................................................................................................................3311.001.00---------1.00--------------------------------------------------------------------------------------------
................................TTTGAAGAGCTCAACATGGA.................................................................................................................................................................201.000.00---------------------------------------------------------------------------------1.00--------------------
..GACTTTTCTGAGACCCTGACTCGGGCCAA......................................................................................................................................................................................2911.001.00------1.00-----------------------------------------------------------------------------------------------
............................CAAATTTGAAGAGCTCAACATGGATC...............................................................................................................................................................2611.001.00---------------------------------------------1.00--------------------------------------------------------
........................................................................................................................................................................GTTCCGGTCTACTATGA............................1711.001.00-------------------------------1.00----------------------------------------------------------------------
..................................................................................................................................................................GGATCTGTTCCGGTCTACT................................1911.001.00----------------------------------------------------------1.00-------------------------------------------
.................................TTGAAGAGCTCAACATGGAT................................................................................................................................................................2011.001.00---------------------------------1.00--------------------------------------------------------------------
...............................ATTTGAAGAGCTCAACATGGAT................................................................................................................................................................221.000.00--------------------------------------------------------------1.00---------------------------------------
...........................................................................................................................................................................................CCCGTCCAGAAAGTGTTGGA......2011.001.00------------------------------------------------------1.00-----------------------------------------------
..........TGAGACCCTGACTCGGGCCAAATTTGAAGAGC...........................................................................................................................................................................3211.001.00----------------------------------1.00-------------------------------------------------------------------
................................TTTGAAGAGCTCAACATGGATC...............................................................................................................................................................221.000.00-----------------------------1.00------------------------------------------------------------------------
......................................................................................................................................................................................TGAAGCCCGTCCAGAATTT............191.000.00------------------------1.00-----------------------------------------------------------------------------
...................GACTCGGGCCAAATTTGAAGAG............................................................................................................................................................................2211.001.00-----------------------------------1.00------------------------------------------------------------------
...........GAGACCCTGACTCGGGCCAAATTTGA................................................................................................................................................................................2611.001.00-----------1.00------------------------------------------------------------------------------------------
................................TTTGAAGAGCTCAACATGGAT................................................................................................................................................................211.000.00----------------------------------------------------1.00-------------------------------------------------
.................................................................................................................................................................AGGATCTGTTCCGGTCTACT................................2011.001.00------------------------------------------------------------------1.00-----------------------------------
.....................................................................................................................................................................................ATGAAGCCCGTCCAGAAAGTG...........2111.001.00------------------1.00-----------------------------------------------------------------------------------
.................CTGACTCGGGCCAAATTTGAAGAGCTCA........................................................................................................................................................................2811.001.00---------------------------------------------------------1.00--------------------------------------------
............................CAAATTTGAAGAGCTCA........................................................................................................................................................................1740.750.75---------------------------------------------------------------------------------------------0.75--------
.........................GGCCAAATTTGAAGAGCT..........................................................................................................................................................................1820.500.50-----------------------------------------------------------------------------------------------0.50------
.............................................................................................................TTGCATCTAGATACTT........................................................................................1620.500.50------------------------------------0.50-----------------------------------------------------------------
.........................GGCCAAATTTGAAGAGCTCAAC......................................................................................................................................................................2220.500.50----------0.50-------------------------------------------------------------------------------------------
..................................................................................................................................................CCATGTCTTTTTTCTAG..................................................1720.500.50----------------------------------------------------------------------------------------------0.50-------
..GACTTTTCTGAGACCCTGACT..............................................................................................................................................................................................2130.330.33---------------------------------------------------------------------------------------------------0.33--
.AGACTTTTCTGAGACCCTGAC...............................................................................................................................................................................................2130.330.33--------------------------------------0.33---------------------------------------------------------------
...ACTTTTCTGAGACCCTGAC...............................................................................................................................................................................................1930.330.33------------------------------------------------------------------------------------------------0.33-----
.....................................................................................................................................................................................................AAGTGTTGGAAGATTC1630.330.33--------------------------------------------------------------------------------------------------0.33---
.....TTTTCTGAGACCCTGACT..............................................................................................................................................................................................1830.330.33-------------------0.33----------------------------------------------------------------------------------
...ACTTTTCTGAGACCCTGACT..............................................................................................................................................................................................2030.330.33-------------------------------------------------------------------------------------------------0.33----
.....................................................TGTTCCTTGTTTTCTGC...............................................................................................................................................1740.250.25----------------------------------------------------------------------------------------------------0.25-
................................TTTGAAGAGCTCAACA.....................................................................................................................................................................1650.200.20---------------------------------------0.20--------------------------------------------------------------
......................................................................................................................................................................................................AGTGTTGGAAGATTCTTA1860.170.17----------------------------------------0.17-------------------------------------------------------------
......................................................................................................................................................................................................AGTGTTGGAAGATTC1560.170.17-----------------------------------------------------------------------------------------------------0.17
....CTTTTCTGAGACCCTGA................................................................................................................................................................................................1770.140.14-----------------------------------------0.14------------------------------------------------------------
...............................................................................................................................................................................................TCCAGAAAGTGTTGG.......1590.110.11--------------------------------------------------------------------------------------------0.11---------

Antisense strand
AAGACTTTTCTGAGACCCTGACTCGGGCCAAATTTGAAGAGCTCAACATGGTATGTTCCTTGTTTTCTGCTTTGCTAATGAGATCTCCTTAGACTCTGAATTCAGGACATTGCATCTAGATACTTAGATAACAGACATCACAGTAACCATGTCTTTTTTCTAGGATCTGTTCCGGTCTACTATGAAGCCCGTCCAGAAAGTGTTGGAAGATTC
.........................................................................................((((.((((....)))).......((((((....))))))...((((((..........))))))....))))...................................................
...................................................................................84.............................................................................163................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189782SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR040023(GSM532908)
G575T. (cervix)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		GSM532929(GSM532929)
G702N. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................................................................AGATCTCCTTAGACTGTCG.................................................................................................................. 191.000.00-----------------------------------------------------------------1.00------------------------------------
......................................................................................................CAGGACATTGCATCTCTAT............................................................................................ 191.000.00------------------------------------1.00-----------------------------------------------------------------