ID: uc004bdn.2_intron_0_0_chr9_111696846_f.5p
GENE: (1)
chr9:111696796-111697045+


(6)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(11)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GGTGGTGCCTTCGCTCGTGGATCGATACTTCACTCGCTGGTACAAACCGGGTAAGTGCGGAGTGATGTTGATCCCTCCTTGGCCGCACTGGCCTAATGCTGTGTAGACTATGTTGACAGATCATAAGCCACGCGCGCTCTCCCTGGCTCTCCGTCCCCACGTCAGAAGGCACTGGACTTCTGTGTTCCGTCTAGCCCCAGGGAATGGCATTTGCAAAGACCTGGTGGCCTGAAATACTTCAGGGCGCATT
..............................................................................................................................((((.............))))...........(((.((((((........))))))))).................................................................
..............................................................................................................................127........................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...................................................................................................................................................................AGAAGGCACTGGACTTGGA....................................................................1916.000.004.004.006.00-1.00------1.00--------------------------------
..................................................................................................................................................................CAGAAGGCACTGGACTTGGAG...................................................................2112.000.00---2.003.00-2.00-1.001.001.00---1.00-----1.00-----------------------
.................................................................................................................................................................TCAGAAGGCACTGGACTTGGAG...................................................................22112.001.00---1.001.00----1.00--1.00-1.00-1.001.00---------1.00--1.00----1.00----1.00--1.00
..................................................................................................................................................................CAGAAGGCACTGGACTTGG.....................................................................197.000.003.00------2.001.00-1.00---------------------------------
...................................................................................................................................................................AGAAGGCACTGGACTTGGAG...................................................................205.000.00-----4.00----------1.00---------------------------
................................................................................................................................................................GTCAGAAGGCACTGGACTTGGA....................................................................224.000.00---------1.00---------1.00-----1.001.00-----------------
...................................................................................................................................................................AGAAGGCACTGGACTTGG.....................................................................184.000.001.00-----1.001.00-----------------------------1.00------
..................................................................................................................................................................CAGAAGGCACTGGACTTG......................................................................183.000.00------2.001.00------------------------------------
..................................................................................................................................................................CAGAAGGCACTGGACTTGGA....................................................................203.000.00---1.00----1.00--------1.00--------------------------
........................................................................................................................................................................................................................AGACCTGGTGGCCTGAAATA..............2013.003.00-3.00------------------------------------------
.................................................................................................................................................................TCAGAAGGCACTGGACTTG......................................................................1912.001.002.00-------------------------------------------
.................................................................................................................................................................TCAGAAGGCACTGGACTTGG.....................................................................2012.001.00-----1.00-----1.00--------------------------------
....................................................................................................................................................................GAAGGCACTGGACTTGGAG...................................................................192.000.00-1.00-1.00----------------------------------------
............................................AACCGGGTAAGTGCGGAGTGAG........................................................................................................................................................................................221.000.00--1.00-----------------------------------------
...................................................................................................................................GCGCGCTCTCCCTGGCC......................................................................................................171.000.00---------------------1.00----------------------
.................................................................................................GCTGTGTAGACTATGTTGACAG...................................................................................................................................2211.001.00-------------1.00------------------------------
...............................................................GATGTTGATCCCTCCTTGGC.......................................................................................................................................................................2011.001.00-----------------------------------------1.00--
......................................................................................................................................................................................................................AAAGACCTGGTGGCCTGTTA................201.000.00---1.00----------------------------------------
......................................................................................................................................................................................................AGGGAATGGCATTTGATCA.................................191.000.00--------------------------------------1.00-----
...GGTGCCTTCGCTCGTGGATCGATA...............................................................................................................................................................................................................................2411.001.00-----------------------1.00--------------------
.................................................................................................................................................................TCAGAAGGCACTGGACTT.......................................................................1811.001.00------------1.00-------------------------------
........................................................................................................................................................................................TTCCGTCTAGCCCCAGGG................................................1811.001.00-------------1.00------------------------------
............................................................AGTGATGTTGATCCCAGG............................................................................................................................................................................181.000.00-----------------------------1.00--------------
...............................................................................................................................................................................................TAGCCCCAGGGAATGGCATTCGC....................................231.000.00-------------------------------1.00------------

Antisense strand
GGTGGTGCCTTCGCTCGTGGATCGATACTTCACTCGCTGGTACAAACCGGGTAAGTGCGGAGTGATGTTGATCCCTCCTTGGCCGCACTGGCCTAATGCTGTGTAGACTATGTTGACAGATCATAAGCCACGCGCGCTCTCCCTGGCTCTCCGTCCCCACGTCAGAAGGCACTGGACTTCTGTGTTCCGTCTAGCCCCAGGGAATGGCATTTGCAAAGACCTGGTGGCCTGAAATACTTCAGGGCGCATT
..............................................................................................................................((((.............))))...........(((.((((((........))))))))).................................................................
..............................................................................................................................127........................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038858(GSM458541)
MEL202. (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR040038(GSM532923)
G531N. (cervix)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...................................................................CGGCCAAGGAGGGATCAA..................................................................................................................................................................... 1813.003.00---------------2.00-----------------1.00----------
...................................................................................................................................................TCTCCGTCCCCACGTAGG..................................................................................... 181.000.00---------------------------------------1.00----
...................................................................................................................................................TCTCCGTCCCCACGTCAG..................................................................................... 181.000.00------------------1.00-------------------------
..........................................................................................................................................CTCCCTGGCTCTCCGCCC.............................................................................................. 181.000.00----------------------------1.00---------------
.....................................................................................................................................................................................TGGGGCTAGACGGAACAC................................................... 1811.001.00--------------------------------1.00-----------
..................................................................................................................................................................................TGGGGCTAGACGGAACACAGA................................................... 2111.001.00------------------------------------1.00-------
....................CAGCGAGTGAAGTATCGAT................................................................................................................................................................................................................... 1911.001.00----------------------------------1.00---------
...............................................................................................................................................CGTGGGGACGGAGAGCCA......................................................................................... 1811.001.001.00-------------------------------------------
................................................................................................................................CACGCGCGCTCTCCCTC......................................................................................................... 171.000.00----------------------1.00---------------------
.........................................................AGGGATCAACATCACTCCG.............................................................................................................................................................................. 1911.001.00------------------1.00-------------------------
.............................................................................................................................................................................................................AGGCCACCAGGTCTTTGCAAATGCC.................... 2511.001.00------------------------------------------1.00-
........................................................................CCAGTGCGGCCAAGGAGGG............................................................................................................................................................... 1911.001.00------------------------1.00-------------------