ID: uc004aup.1_intron_0_0_chr9_97081533_r
GENE: FAM22F(6)
chr9:97081483-97081944-


(1)
AGO2.ip
(1)
B-CELL
(8)
BRAIN
(7)
BREAST
(15)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(7)
LIVER
(1)
OTHER
(1)
RRP40.ip
(4)
SKIN
(1)
TESTES
(4)
UTERUS

Sense strand
TGGCCCTAAGCCAGGAGCTGGAGCAGGAGGAAGGACTCACCCTTGCCCAGGTAGAGCAGCGGAGGGAGGGGAACCCAGGTACTCCAGGGGCAGGAGGGACCCGGCACACAAGGCCCACCCGATTGTCTAAGCCCACCCTGCTGGGGATGTTCAGCTTCTTGGGGAGCCACTCCGGGGTGGGAAGATGCAGGTTCAGAGGGAGTAGGATGGAGAGGAGCCAGGGAGGGGAGTCAGGATGCAAGCTGCAGTGAGGCCCAACGGGATGCCCGGCAGAGCCACACCCTCTCTCTTTGACATGAAGCCCAGCTGCCTCAGGCTTCCCTGCCTCCCACCCAAGTGCCCTGGTCTCCACCATTCTGGGCCCTGCTCACACCTGGGGCAGCGCCAGTAAGTGCCCCCTTTCCTTCCGCAGCTAGTGGAGAAGCGCCTCCTGTCCTTGAAGGAGAAAGGGTGCGGGAGGGC
.............................................................................................................................................................................................(((((.............(((.......))).....(((..(((...(((.....))).)))..)))..((((...))))...))))).........................................................................................................................................................................................
.............................................................................................................................................................................................190....................................................................................277.......................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189782SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040036(GSM532921)
G243N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577589(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029131(GSM416760)
MCF7. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
..................................................................................................................................................................................................AGAGGGAGTAGGATGCATA.........................................................................................................................................................................................................................................................1920.000.00---5.00-2.002.002.00-2.002.00-1.00-----------1.00---1.00-------1.00--1.00------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGCAT..........................................................................................................................................................................................................................................................186.000.00-1.00---1.00-1.00-------1.00----1.00--------------------1.00----------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGATAG........................................................................................................................................................................................................................................................194.000.002.00-2.00-------------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGAAT..........................................................................................................................................................................................................................................................184.000.00-2.00-------------------------1.00-----1.00------------------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGATAGT.......................................................................................................................................................................................................................................................204.000.002.00------------1.00--------------------------------1.00-----------
..................................................................................................................................................................................................AGAGGGAGTAGGATGCA...........................................................................................................................................................................................................................................................173.000.00-----1.00-------1.00----1.00---------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGGATAGT.......................................................................................................................................................................................................................................................212.000.00-1.00----------1.00---------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGTAT..........................................................................................................................................................................................................................................................182.000.00--1.00----------------------------------1.00--------------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGATAGG.......................................................................................................................................................................................................................................................202.000.002.00---------------------------------------------------------
..........................................TTGCCCAGGTAGAGCAGTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................212.000.00----2.00-----------------------------------------------------
......TAAGCCAGGAGCTGGAGCAGGAGGAATAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................302.000.00--------2.00-------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGCAGA.........................................................................................................................................................................................................................................................192.000.00-1.00-----------------1.00--------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGATTT.........................................................................................................................................................................................................................................................191.000.00-1.00--------------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGTAG..........................................................................................................................................................................................................................................................181.000.00--1.00-------------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGTGTG.........................................................................................................................................................................................................................................................191.000.00-----------1.00----------------------------------------------
...............................................................................................................................................................................................................................................................CAACGGGATGCCCGGTGT.............................................................................................................................................................................................181.000.00--------------------------1.00-------------------------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGAGTATT......................................................................................................................................................................................................................................................211.000.001.00---------------------------------------------------------
....................................................................................................................................................................................................AGGGAGTAGGATGGATTCA.......................................................................................................................................................................................................................................................191.000.00--------------------------------------1.00-------------------
.............................................................................................................................................................................................................................................................................................................................TTCCCTGCCTCCCACCCAGC.............................................................................................................................201.000.00-------------------------------------------1.00--------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGGAGAGTTT.....................................................................................................................................................................................................................................................231.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGTGTA.........................................................................................................................................................................................................................................................191.000.00------------------------------------------1.00---------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGGAT..........................................................................................................................................................................................................................................................181.000.001.00---------------------------------------------------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGAGGGT.......................................................................................................................................................................................................................................................201.000.00----------------------1.00-----------------------------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGGTG.........................................................................................................................................................................................................................................................181.000.00---------------------------------------------1.00------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGATGGT.......................................................................................................................................................................................................................................................201.000.00--------------------------------1.00-------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGGATGGT.......................................................................................................................................................................................................................................................211.000.00-----------1.00----------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGGATAAT.......................................................................................................................................................................................................................................................211.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGGATAGA.......................................................................................................................................................................................................................................................211.000.00---------------------1.00------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGAATA.........................................................................................................................................................................................................................................................191.000.00----------------------------------1.00-----------------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGATCGA.......................................................................................................................................................................................................................................................201.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGACT..........................................................................................................................................................................................................................................................181.000.00------1.00---------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGAGTA.........................................................................................................................................................................................................................................................191.000.00--------------1.00-------------------------------------------
............AGGAGCTGGAGCAGGATTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------------------1.00----------------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGATAGA.......................................................................................................................................................................................................................................................201.000.001.00---------------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGGATAGG.......................................................................................................................................................................................................................................................211.000.00-1.00--------------------------------------------------------
...................................................................................................................................................................................................GAGGGAGTAGGATGGAAAAG.......................................................................................................................................................................................................................................................201.000.00--1.00-------------------------------------------------------
..................................................................................................................................................................................................AGAGGGAGTAGGATGTA...........................................................................................................................................................................................................................................................171.000.00----------------------------------------1.00-----------------
..............................................................................................................................................................TTGGGGAGCCACTCCGGGGTGGGAAGATGC..................................................................................................................................................................................................................................................................................3020.500.50-------------------------------------------------0.50--------
.........................................................................................................................................................................................TGCAGGTTCAGAGGGAGTAGGATG.............................................................................................................................................................................................................................................................2470.290.29--------0.29-------------------------------------------------
........AGCCAGGAGCTGGAGCAGGAGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2550.200.20----------------------------------------------------0.20-----
...............AGCTGGAGCAGGAGGAAGGACTCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2650.200.20---------------0.20------------------------------------------
............AGGAGCTGGAGCAGGAGGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2260.170.17----------------------------------------------------0.17-----
.......................................................................................................................................................................................GATGCAGGTTCAGAGGGAGTAGGATGGA...........................................................................................................................................................................................................................................................2870.140.14--------0.14-------------------------------------------------
.......................CAGGAGGAAGGACTCACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1870.140.14---------------------------------------------------------0.14
.........................................................................................................................................................................................TGCAGGTTCAGAGGGAGTAGGATGGA...........................................................................................................................................................................................................................................................2670.140.14--------0.14-------------------------------------------------
.......................................................................................................................................................................................GATGCAGGTTCAGAGGGAGTAGGAT..............................................................................................................................................................................................................................................................2570.140.14--------0.14-------------------------------------------------
....................................................AGAGCAGCGGAGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................1590.110.11-----------------0.11----------------------------------------

Antisense strand
TGGCCCTAAGCCAGGAGCTGGAGCAGGAGGAAGGACTCACCCTTGCCCAGGTAGAGCAGCGGAGGGAGGGGAACCCAGGTACTCCAGGGGCAGGAGGGACCCGGCACACAAGGCCCACCCGATTGTCTAAGCCCACCCTGCTGGGGATGTTCAGCTTCTTGGGGAGCCACTCCGGGGTGGGAAGATGCAGGTTCAGAGGGAGTAGGATGGAGAGGAGCCAGGGAGGGGAGTCAGGATGCAAGCTGCAGTGAGGCCCAACGGGATGCCCGGCAGAGCCACACCCTCTCTCTTTGACATGAAGCCCAGCTGCCTCAGGCTTCCCTGCCTCCCACCCAAGTGCCCTGGTCTCCACCATTCTGGGCCCTGCTCACACCTGGGGCAGCGCCAGTAAGTGCCCCCTTTCCTTCCGCAGCTAGTGGAGAAGCGCCTCCTGTCCTTGAAGGAGAAAGGGTGCGGGAGGGC
.............................................................................................................................................................................................(((((.............(((.......))).....(((..(((...(((.....))).)))..)))..((((...))))...))))).........................................................................................................................................................................................
.............................................................................................................................................................................................190....................................................................................277.......................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189782SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR040036(GSM532921)
G243N. (cervix)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR040029(GSM532914)
G026T. (cervix)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
TAX577589(Rovira)
total RNA. (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029131(GSM416760)
MCF7. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR343337SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
..............................................................................................................................................................................................GTTCAGAGGGAGTAGGTCTG............................................................................................................................................................................................................................................................ 201.000.00-----------------------1.00----------------------------------
...........................................................................................................................................................................................................................................................................................................AGCCCAGCTGCCTCAGGCTTCCCTC.......................................................................................................................................... 251.000.00----1.00-----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................GGGGCAGCGCCAGTATGTC.................................................................... 191.000.00-----------------------------1.00----------------------------
..............................................................................................................................................................................................GTTCAGAGGGAGTAGTCTG............................................................................................................................................................................................................................................................. 191.000.00----------------1.00-----------------------------------------
................................................................................................................................................................................................................................................................................................AGGCAGCTGGGCTTCATGTCAAAG...................................................................................................................................................... 2421.001.00-----------------1.00----------------------------------------
.................................................................GAGGGGAACCCAGGTTAGA.......................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--1.00-------------------------------------------------------
.....................................................GAGCAGCGGAGGGAGCTG....................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------1.00---------------------------
.................................................................................................................................................................................................................................................GCTGCAGTGAGGCCCACTCG......................................................................................................................................................................................................... 201.000.00----1.00-----------------------------------------------------
..................................................................................................................................................................................................................................................................................................................CTGCCTCAGGCTTCCCTGGGA....................................................................................................................................... 211.000.00-------------------------------1.00--------------------------
..............................................................................................................................................GGGGATGTTCAGCTTTCCC............................................................................................................................................................................................................................................................................................................. 191.000.00--------------------------------------------1.00-------------
...................................................................................................................................................................................................................................................................................CCACACCCTCTCTCTGAGC........................................................................................................................................................................ 191.000.00-------------------------1.00--------------------------------
............................................................................................................................................................................................................................................................................................................GCCCAGCTGCCTCAGGCTTCCCG........................................................................................................................................... 231.000.00--1.00-------------------------------------------------------
.......................................................................................................................................TGAACATCCCCAGCAGGG..................................................................................................................................................................................................................................................................................................................... 1830.670.67-----------------------------------------------0.67----------
.....................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGAAGGAAAGGGGGCACTT.................................................. 2320.500.50--------------0.50-------------------------------------------
.................................................................................................................................................................................................................................................CATCCCGTTGGGCCTCACTGCAGC..................................................................................................................................................................................................... 2420.500.50----0.50-----------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................GCGGAAGGAAAGGGGGCAC.................................................... 1920.500.50--------------------------------------------------0.50-------
..................................................................................................................................AAGAAGCTGAACATCCCCAGCAGGGTGGGC.............................................................................................................................................................................................................................................................................................................. 3020.500.50---------------------------------------------------0.50------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTCAAGGACAGGAGGCGC................... 2020.500.50------------------------------------------------0.50---------
...........................................................................................................................................................................................................................................................................................................................GTGGGAGGCAGGGAAGC.................................................................................................................................. 1740.250.25------------------------------------------------------0.25---
.....CTTCCTCCTGCTCCAGCTCCTGGCTTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................. 2850.200.20----------------0.20-----------------------------------------
........................................................................................................................................................................................TCCATCCTACTCCCTCTGAACCTGCAT........................................................................................................................................................................................................................................................... 2770.140.14-------------------------------------------------------0.14--
...................................................................................................................................................................................................................................................................................CAAAGAGAGAGGGTGTGG......................................................................................................................................................................... 1870.140.14-----------------------------------------------------0.14----
..................................................................................................................................................................................CCCTCTGAACCTGCATCTTCCC...................................................................................................................................................................................................................................................................... 2270.140.14--------------------------------------------------------0.14-
.............................................................................................................................................................................................................................................................................TGTCAAAGAGAGAGGGTGTGGCTCTGC...................................................................................................................................................................... 2770.140.14--------0.14-------------------------------------------------
...............................................................................................................................................................................................................................................................................................................GGGAAGCCTGAGGCAGCTG............................................................................................................................................ 1980.120.12-----------------------------------------------------0.12----