ID: uc003yxz.2_intron_10_0_chr8_144408515_r.5p
GENE: (3)
chr8:144411320-144411569-


(2)
AGO2.ip
(2)
B-CELL
(4)
BRAIN
(2)
BREAST
(14)
CELL-LINE
(1)
CERVIX
(2)
HEART
(7)
LIVER
(2)
OTHER
(10)
SKIN

Sense strand
ACACAACAAAGGAGGTTTTCCGGAAGAACTTCTTCAATGACTGGCGAAAGGTAGGTACCCTGGGCGGCCGCCACAGCTGTCCTGGACCTGGCTGGCTAGGCGTCTGCGGTTCTGCAGTGCTGCCTCTGAACGCCCCTCGCAAGTTCTCGGTGGCCCCTGTGTGACCACTCACAGGTGCCGTCATGGCTCTTTGCAGCTTCGAGCTCCTGGGCTCAAGCCATCCTCCTGTCTCGGCCTCCTGAGTAGCTGG
....................................................................................((...(((.(((..((((.(((((....)))))))))))).......)))..))................................................................................................................
..................................................................................83......................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189787SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................CTGGCTGGCTAGGCGGGGG................................................................................................................................................1927.000.00-9.001.001.002.003.003.00-1.001.00-----------1.00-1.00-----1.00-1.00----------1.001.00---
.......................................................................................CTGGCTGGCTAGGCGGGG.................................................................................................................................................1817.000.00-1.001.00-2.001.00--1.001.001.001.00-1.00-----1.00----1.00--1.00-----1.00-1.00-1.00---1.00-----
.......................................................................................CTGGCTGGCTAGGCGGGC.................................................................................................................................................182.000.00--1.00------------1.00-------------------------------
.......................................................................................CTGGCTGGCTAGGCGGGGT................................................................................................................................................192.000.00--1.00----1.00---------------------------------------
.......................................................................................CTGGCTGGCTAGGCGGGTT................................................................................................................................................192.000.00--2.00--------------------------------------------
....................................ATGACTGGCGAAAGGTAGGTACCC..............................................................................................................................................................................................2411.001.00---------------------------------------1.00-------
....................................................................................GACCTGGCTGGCTAGGCGGGGT................................................................................................................................................221.000.00-------1.00---------------------------------------
....................................................................................................................GTGCTGCCTCTGAACTCTG...................................................................................................................191.000.00--------------------------------------------1.00--
...................................AATGACTGGCGAAAGGAAAT...................................................................................................................................................................................................201.000.00--------------------------------------1.00--------
.......................................................................................CTGGCTGGCTAGGCGGG..................................................................................................................................................171.000.00----------------------------------------1.00------
....................................................................................................................................................................................................................................TCTCGGCCTCCTGAGTAGCTGGTAC251.000.001.00----------------------------------------------
...................................AATGACTGGCGAAAGGAA.....................................................................................................................................................................................................181.000.00-------------1.00---------------------------------
.....................................................................................ACCTGGCTGGCTAGGCGGGGG................................................................................................................................................211.000.00---1.00-------------------------------------------
.......AAAGGAGGTTTTCCGGAAGAA..............................................................................................................................................................................................................................2111.001.00--1.00--------------------------------------------
......................................................................................................................................................................................................................................TCGGCCTCCTGAGTAGCTGG2001.001.00--------------------------1.00--------------------
............................................................TGGGCGGCCGCCACACGTC...........................................................................................................................................................................191.000.00----------------------------1.00------------------
..............................................................................................................................................................................................................................CTCCTGTCTCGGCCTCCTGAGTAGCCGGG291.000.00---1.00-------------------------------------------
.............................................................................................................................................................................................................CCTGGGCTCAAGCCATCCTCCTAGCC...................261.000.00-------------------------1.00---------------------
.......................................................................................CTGGCTGGCTAGGCGGAA.................................................................................................................................................181.000.00-------1.00---------------------------------------
....................................................................................................................................................................................................CTTCGAGCTCCTGGGT......................................161.000.00----------------------1.00------------------------
.................................................................................CTGGACCTGGCTGGCTA........................................................................................................................................................1711.001.00------------------1.00----------------------------
...........................................................................GCTGTCCTGGACCTGAAAA............................................................................................................................................................191.000.00------------------------------1.00----------------
................................................................................................................TGCAGTGCTGCCTCTCTGT.......................................................................................................................191.000.00-----------1.00-----------------------------------
.......................................................................................CTGGCTGGCTAGGCGGT..................................................................................................................................................171.000.00------------1.00----------------------------------
.......................AAGAACTTCTTCAATGACTGGC.............................................................................................................................................................................................................2211.001.00--------------------------------1.00--------------
.......................................................................................CTGGCTGGCTAGGCGGGCG................................................................................................................................................191.000.00------------1.00----------------------------------
.......................AAGAACTTCTTCAATGACTGGCGAAAGG.......................................................................................................................................................................................................2811.001.00------------------------------------1.00----------
........................................................................................................................................................................................................................................GGCCTCCTGAGTAGCTGGA191.000.00----------------------------------1.00------------
.......................................................................................CTGGCTGGCTAGGCGAG..................................................................................................................................................171.000.00----------1.00------------------------------------
......................................................................................CCTGGCTGGCTAGGCGGC..................................................................................................................................................181.000.00----------------1.00------------------------------
...........................................................................GCTGTCCTGGACCTGG...............................................................................................................................................................1640.250.25---------------------------------------------0.25-
.................................................................................................................................................................................................CAGCTTCGAGCTCCTGGGC......................................1950.200.20----------------------------------------------0.20

Antisense strand
ACACAACAAAGGAGGTTTTCCGGAAGAACTTCTTCAATGACTGGCGAAAGGTAGGTACCCTGGGCGGCCGCCACAGCTGTCCTGGACCTGGCTGGCTAGGCGTCTGCGGTTCTGCAGTGCTGCCTCTGAACGCCCCTCGCAAGTTCTCGGTGGCCCCTGTGTGACCACTCACAGGTGCCGTCATGGCTCTTTGCAGCTTCGAGCTCCTGGGCTCAAGCCATCCTCCTGTCTCGGCCTCCTGAGTAGCTGG
....................................................................................((...(((.(((..((((.(((((....)))))))))))).......)))..))................................................................................................................
..................................................................................83......................................................139.............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040008(GSM532893)
G727N. (cervix)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189787SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................................................................................................................................................TCCTGTCTCGGCCTCCTGAGTAG.... 232.000.002.00----------------------------------------------
...............................................................................................................................................................................................................................TCCTGTCTCGGCCTCCTGAC....... 201.000.001.00----------------------------------------------
.........................................................................................................................................................................................................AGCTCCTGGGCTCAAGCCATCCTCCAAAG.................... 291.000.001.00----------------------------------------------
...........................................................................................................................................................................................................................ATCCTCCTGTCTCGGCCTCCTGAGTAGCTCAC 321.000.001.00----------------------------------------------
.....................................................................................................................................................................................................................................TACTCAGGAGGCCGAG..... 1601.001.00-----------------1.00-----------------------------
..............................................................................................................................................................................................................................CTCCTGTCTCGGCCTCCTGAGTAGT... 251.000.00---1.00-------------------------------------------
.............................................................................................................................................................................................................CCTGGGCTCAAGCCATCCTCCTTGC.................... 251.000.001.00----------------------------------------------
................................................................................................................................................................................................................GGGCTCAAGCCATCCTCTGCA..................... 211.000.00--------------------1.00--------------------------
..............................................................................................................................................................................................................................CTCCTGTCTCGGCCTCCTGAGTAACC.. 261.000.001.00----------------------------------------------
..........................................................................................................CGGTTCTGCAGTGCTG................................................................................................................................ 161.000.00--------------1.00--------------------------------
..........................................................................................................................................................................................................GCTCCTGGGCTCAAGCCATCCTCCTGGG.................... 281.000.001.00----------------------------------------------
................................................................................................................................................................................................................................CCTGTCTCGGCCTCCTGAGTGG.... 221.000.001.00----------------------------------------------
................................................................................................................................................................................................................................CCTGTCTCGGCCTCCTGAGTGAG... 231.000.001.00----------------------------------------------
..............................................................................................................................................................................................................................CTCCTGTCTCGGCCTCCTGAGTAAACG. 271.000.001.00----------------------------------------------
.....................................................................................................................................................................................................ATGGCTTGAGCCCAGGAGCTCGAA............................. 2430.330.33---0.33-------------------------------------------
.................................................................................................................................................................................................TGAGCCCAGGAGCTCGAAGCTG................................... 2240.250.25--------------0.25--------------------------------
.............................................................................................................................................................................................................................ACTCAGGAGGCCGAGACAGGAGG...... 2390.220.22---0.22-------------------------------------------
.............................................................................................................................................................................................................................AGCTACTCAGGAGGCCGAGACAGGAGG.. 2770.140.14---0.14-------------------------------------------
........................................................................................................................................................................................................AGGAGGATGGCTTGAGCCCAGGAGCTC....................... 2780.120.120.12----------------------------------------------
........................................................................................................................................................................................................................AGGCCGAGACAGGAGGATGGC............. 2190.110.110.11----------------------------------------------